Os04g0477000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NPH3 domain containing protein.
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Os04g0477000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NPH3 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116.66 | 0.507 | 11.3 | 2.68 | 1.18 | -3.77 | -0.998 | -8.72 | 0.471 | 13.3 | 0.2691 | 1505 | -- | -- |
| 148.32 | 0.567 | 11.3 | 2.61 | 1.05 | -1.55 | 0.159 | -- | 0.537 | 12.3 | 0.5211 | 1659 | -- | -- |
| 119 | 0.508 | 11.3 | 2.65 | 1.49 | -3.64 | -- | -8.45 | 0.48 | 13.1 | 0.24 | 1466 | -- | -- |
| 137.11 | 0.545 | 11.4 | 2.06 | 1.07 | -1.82 | -- | -- | 0.408 | 12.7 | 1.505 | 1606 | -- | -- |
| 149.52 | 0.57 | 11.4 | 2.18 | -- | -4.41 | -- | -6.72 | 0.312 | -- | 0.2787 | 1609 | -- | -- |
| 162.91 | 0.598 | 11.4 | 2.35 | 1.66 | -- | 0.0469 | -- | 0.55 | 12.9 | -- | -- | -- | -- |
| 162.92 | 0.598 | 11.4 | 2.35 | 1.66 | -- | -- | -- | 0.551 | 12.9 | -- | -- | -- | -- |
| 159.82 | 0.589 | 11.5 | 1.8 | -- | -3.23 | -- | -- | 0.238 | -- | 1.145 | 1692 | -- | -- |
| 176.36 | 0.619 | 11.4 | -- | 1.7 | -1.72 | -- | -- | 0.323 | 12.4 | 0.002829 | 23920 | -- | -- |
| 334.79 | 0.855 | 11.4 | 2.29 | -- | -- | -- | -- | 0.519 | -- | -- | -- | -- | -- |
| 308.71 | 0.822 | 11.4 | -- | 1.62 | -- | -- | -- | 0.289 | 12.8 | -- | -- | -- | -- |
| 232.39 | 0.71 | 11.5 | -- | -- | -3.91 | -- | -- | 0.00642 | -- | 0.1879 | 1652 | -- | -- |
| 473.18 | 1.02 | 11.5 | -- | -- | -- | -- | -- | 0.265 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 117.10 | radiation | 40 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 9 | 117.33 | radiation | 10 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 17 | 117.74 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 18 | 117.75 | radiation | 1 | 43200 | < th | dose independent | rect. | 19 | 10 |
| 19 | 117.75 | radiation | 10 | 43200 | < th | dose dependent | rect. | 22 | 7 |
| 27 | 117.95 | radiation | 30 | 43200 | < th | dose independent | rect. | 16 | 7 |
| 30 | 117.99 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 40 | 117.99 | radiation | 1 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 52 | 118.02 | radiation | 30 | 43200 | < th | dose independent | rect. | 16 | 5 |
| 56 | 118.06 | radiation | 1 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 61 | 118.15 | radiation | 1 | 43200 | < th | dose independent | rect. | 22 | 7 |
| 80 | 118.42 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 90 | 118.65 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 96 | 118.76 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 99 | 118.80 | radiation | 10 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 133 | 119.12 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 138 | 119.17 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 143 | 119.30 | radiation | 1 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 153 | 119.33 | humidity | 90 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 155 | 119.39 | radiation | 30 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 171 | 119.40 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 6 |
| 172 | 119.42 | humidity | 80 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 173 | 119.43 | radiation | 40 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 174 | 119.45 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 187 | 119.60 | radiation | 40 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 188 | 119.61 | temperature | 15 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 190 | 119.66 | radiation | 40 | 43200 | < th | dose independent | rect. | 24 | 8 |
| 198 | 119.80 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 6 |
| 220 | 120.05 | humidity | 90 | 43200 | > th | dose independent | rect. | 19 | 7 |
| 235 | 120.36 | temperature | 15 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 245 | 120.44 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 284 | 120.66 | temperature | 15 | 14400 | > th | dose independent | rect. | 21 | 4 |
| 301 | 120.81 | humidity | 90 | 43200 | > th | dose dependent | sin | 13 | NA |
| 306 | 120.85 | temperature | 25 | 90 | < th | dose independent | rect. | 24 | 17 |
| 317 | 120.88 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 350 | 121.01 | temperature | 20 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 376 | 121.06 | temperature | 20 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 381 | 121.08 | temperature | 15 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 390 | 121.11 | humidity | 90 | 43200 | > th | dose independent | rect. | 14 | 12 |
| 432 | 121.23 | radiation | 30 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 473 | 121.32 | temperature | 20 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 477 | 121.33 | temperature | 20 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 494 | 121.37 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 17 |
| 500 | 121.40 | temperature | 15 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 507 | 121.41 | temperature | 25 | 4320 | > th | dose independent | rect. | 9 | 2 |
| 516 | 121.42 | temperature | 15 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 518 | 121.43 | humidity | 90 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 521 | 121.44 | temperature | 15 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 532 | 121.49 | humidity | 90 | 43200 | < th | dose independent | rect. | 14 | 13 |
| 533 | 121.50 | humidity | 90 | 43200 | > th | dose independent | sin | 15 | NA |
| 536 | 121.51 | temperature | 15 | 43200 | > th | dose independent | rect. | 22 | 7 |
| 578 | 121.65 | radiation | 40 | 43200 | > th | dose dependent | rect. | 15 | 18 |
| 612 | 121.74 | temperature | 25 | 90 | < th | dose independent | rect. | 24 | 19 |
| 613 | 121.74 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 4 |
| 623 | 121.76 | temperature | 20 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 654 | 121.84 | temperature | 15 | 43200 | > th | dose independent | rect. | 22 | 16 |
| 659 | 121.85 | humidity | 90 | 43200 | < th | dose independent | sin | 15 | NA |
| 660 | 121.85 | temperature | 15 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 746 | 121.93 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 8 |
| 747 | 121.94 | radiation | 10 | 43200 | < th | dose independent | sin | 13 | NA |
| 748 | 121.94 | temperature | 25 | 4320 | < th | dose independent | rect. | 9 | 2 |
| 752 | 121.94 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 11 |
| 794 | 121.99 | humidity | 90 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 835 | 122.04 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 19 |
| 840 | 122.05 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 4 |
| 875 | 122.10 | temperature | 15 | 43200 | > th | dose independent | sin | 9 | NA |
| 908 | 122.13 | temperature | 15 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 914 | 122.13 | temperature | 15 | 43200 | > th | dose independent | rect. | 9 | 20 |
| 930 | 122.15 | temperature | 15 | 43200 | < th | dose independent | rect. | 23 | 13 |
| 939 | 122.17 | radiation | 40 | 43200 | < th | dose independent | sin | 13 | NA |