Os02g0568200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NPH3 domain containing protein.
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Os02g0568200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NPH3 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 372.97 | 0.907 | 8.21 | -7.42 | 1.86 | 3.63 | -0.517 | -24.7 | 1.04 | 8.73 | 26.82 | 4272 | -- | -- |
| 454.61 | 1 | 7.64 | -2.25 | 1.85 | 2.33 | -0.119 | -- | 1.58 | 7.27 | 0.0007672 | 25164 | -- | -- |
| 373.79 | 0.9 | 8.21 | -7.4 | 1.86 | 3.59 | -- | -24.4 | 1.04 | 8.71 | 26.8 | 4296 | -- | -- |
| 439.2 | 0.976 | 7.68 | -2.72 | 1.91 | 2.06 | -- | -- | 1.43 | 8.81 | 7.677 | 6613 | -- | -- |
| 565.24 | 1.11 | 8.22 | -7.05 | -- | 3.3 | -- | -22.8 | 1.08 | -- | 26.7 | 4439 | -- | -- |
| 506.24 | 1.05 | 7.57 | -1.78 | 1.78 | -- | -0.512 | -- | 1.9 | 8.67 | -- | -- | -- | -- |
| 507.1 | 1.05 | 7.57 | -1.8 | 1.78 | -- | -- | -- | 1.9 | 8.66 | -- | -- | -- | -- |
| 625.66 | 1.16 | 7.69 | -2.65 | -- | 1.84 | -- | -- | 1.56 | -- | 8.99 | 4427 | -- | -- |
| 564.17 | 1.11 | 7.55 | -- | 1.98 | 0.968 | -- | -- | 1.96 | 9.03 | 20.93 | 996 | -- | -- |
| 686.69 | 1.22 | 7.61 | -1.79 | -- | -- | -- | -- | 1.92 | -- | -- | -- | -- | -- |
| 592.38 | 1.14 | 7.52 | -- | 1.78 | -- | -- | -- | 2.1 | 8.74 | -- | -- | -- | -- |
| 746.58 | 1.27 | 7.6 | -- | -- | 0.805 | -- | -- | 1.96 | -- | 21 | 1427 | -- | -- |
| 771.62 | 1.3 | 7.57 | -- | -- | -- | -- | -- | 2.12 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 346.07 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 2 | 348.02 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 5 | 349.30 | wind | 3 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 8 | 352.60 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 4 |
| 14 | 354.64 | humidity | 70 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 16 | 354.99 | wind | 5 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 38 | 357.78 | wind | 5 | 14400 | > th | dose independent | rect. | 10 | 7 |
| 41 | 358.08 | radiation | 40 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 44 | 358.48 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 8 |
| 46 | 358.70 | radiation | 20 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 51 | 359.21 | wind | 5 | 14400 | < th | dose independent | rect. | 10 | 7 |
| 68 | 359.40 | wind | 5 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 72 | 359.66 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 8 |
| 76 | 359.83 | humidity | 60 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 98 | 360.57 | radiation | 40 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 99 | 360.63 | wind | 9 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 110 | 361.07 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 130 | 361.23 | radiation | 30 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 156 | 361.52 | radiation | 30 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 158 | 361.67 | radiation | 10 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 174 | 362.45 | radiation | 10 | 43200 | > th | dose dependent | rect. | 7 | 3 |
| 216 | 363.06 | humidity | 70 | 43200 | < th | dose dependent | rect. | 2 | 11 |
| 223 | 363.14 | radiation | 20 | 43200 | < th | dose dependent | rect. | 20 | 13 |
| 226 | 363.15 | radiation | 20 | 43200 | < th | dose dependent | rect. | 22 | 11 |
| 229 | 363.16 | radiation | 20 | 43200 | < th | dose dependent | rect. | 24 | 9 |
| 231 | 363.17 | radiation | 20 | 43200 | < th | dose independent | rect. | 7 | 4 |
| 234 | 363.17 | radiation | 40 | 43200 | < th | dose dependent | rect. | 20 | 14 |
| 237 | 363.18 | radiation | 40 | 43200 | < th | dose dependent | rect. | 22 | 12 |
| 241 | 363.19 | radiation | 40 | 43200 | < th | dose dependent | rect. | 24 | 10 |
| 276 | 363.40 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 344 | 364.03 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 8 |
| 347 | 364.05 | radiation | 20 | 43200 | < th | dose independent | rect. | 22 | 13 |
| 355 | 364.06 | radiation | 20 | 43200 | < th | dose independent | rect. | 1 | 10 |
| 364 | 364.12 | radiation | 20 | 43200 | > th | dose independent | sin | 10 | NA |
| 515 | 364.81 | radiation | 20 | 43200 | < th | dose independent | sin | 8 | NA |
| 523 | 364.96 | radiation | 40 | 43200 | > th | dose independent | sin | 10 | NA |
| 541 | 365.26 | radiation | 10 | 43200 | > th | dose dependent | sin | 9 | NA |
| 546 | 365.33 | radiation | 30 | 43200 | < th | dose dependent | sin | 9 | NA |
| 828 | 366.53 | humidity | 60 | 43200 | > th | dose independent | rect. | 24 | 13 |
| 915 | 366.80 | radiation | 40 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 938 | 367.02 | radiation | 40 | 43200 | > th | dose independent | rect. | 9 | 23 |
| 956 | 367.05 | radiation | 40 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 999 | 367.23 | radiation | 40 | 43200 | > th | dose dependent | rect. | 12 | 1 |