BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0521300 Os02g0521300|AK120851
(584 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0521300 C2 domain containing protein 1159 0.0
Os05g0373300 Similar to BONZAI1 547 e-155
Os08g0135400 von Willebrand factor, type A domain containin... 93 7e-19
Os06g0608800 von Willebrand factor, type A domain containin... 92 8e-19
Os01g0908700 Similar to Hnrpa2b1-prov protein 91 2e-18
Os12g0288400 Similar to Ubiquitin ligase protein mib (EC 6.... 91 2e-18
Os08g0494300 von Willebrand factor, type A domain containin... 90 4e-18
Os01g0960500 Copine domain containing protein 82 1e-15
>Os02g0521300 C2 domain containing protein
Length = 584
Score = 1159 bits (2999), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 563/584 (96%), Positives = 563/584 (96%)
Query: 1 MGNCCSDEMXXXXXHAGRHSVGPXXXXXXXXXXXXXXXXDRFLRSRGAGASTQVELSLSA 60
MGNCCSDEM HAGRHSVGP DRFLRSRGAGASTQVELSLSA
Sbjct: 1 MGNCCSDEMGGGGGHAGRHSVGPAAAAAAAAAEAASAAADRFLRSRGAGASTQVELSLSA 60
Query: 61 SNLGDQEFFTKSNPMVIVYSKSKEGALEELGRTEVILNSLNPSWNARINVHYQFEVLQPI 120
SNLGDQEFFTKSNPMVIVYSKSKEGALEELGRTEVILNSLNPSWNARINVHYQFEVLQPI
Sbjct: 61 SNLGDQEFFTKSNPMVIVYSKSKEGALEELGRTEVILNSLNPSWNARINVHYQFEVLQPI 120
Query: 121 VFQVYDIDPQFHDVNEKMLKLEEQQFLGEAVCLLSEVITKQNRLLTLKLGVSEHNLPNPS 180
VFQVYDIDPQFHDVNEKMLKLEEQQFLGEAVCLLSEVITKQNRLLTLKLGVSEHNLPNPS
Sbjct: 121 VFQVYDIDPQFHDVNEKMLKLEEQQFLGEAVCLLSEVITKQNRLLTLKLGVSEHNLPNPS 180
Query: 181 KFGELNVQAEESAGSKAIMEMVFRCSDLEIKDLLSKSDPFLLISRISESGVPVPICKTEV 240
KFGELNVQAEESAGSKAIMEMVFRCSDLEIKDLLSKSDPFLLISRISESGVPVPICKTEV
Sbjct: 181 KFGELNVQAEESAGSKAIMEMVFRCSDLEIKDLLSKSDPFLLISRISESGVPVPICKTEV 240
Query: 241 RKNDLNPKWKPVILNLQQIGSKENPLIIECFNFSSNGKHDLIGKIVKSVAELEKMYHSQD 300
RKNDLNPKWKPVILNLQQIGSKENPLIIECFNFSSNGKHDLIGKIVKSVAELEKMYHSQD
Sbjct: 241 RKNDLNPKWKPVILNLQQIGSKENPLIIECFNFSSNGKHDLIGKIVKSVAELEKMYHSQD 300
Query: 301 GENFFVPASTAHDSHSKEVLKSQVYVEKYLENNRQTFLDYISAGCQLNFMVAVDFTASNG 360
GENFFVPASTAHDSHSKEVLKSQVYVEKYLENNRQTFLDYISAGCQLNFMVAVDFTASNG
Sbjct: 301 GENFFVPASTAHDSHSKEVLKSQVYVEKYLENNRQTFLDYISAGCQLNFMVAVDFTASNG 360
Query: 361 NPRLPDSLHYIDPTGRPNAYQRAILEVGDVLQYYDPAKRFPSWGFGARPIDGPVSHCFNL 420
NPRLPDSLHYIDPTGRPNAYQRAILEVGDVLQYYDPAKRFPSWGFGARPIDGPVSHCFNL
Sbjct: 361 NPRLPDSLHYIDPTGRPNAYQRAILEVGDVLQYYDPAKRFPSWGFGARPIDGPVSHCFNL 420
Query: 421 NGSTYQPEVEGIQGIMSAYISALRNVSLAGPTLFGPVVSTATAIANQSLANNQQKYFVLL 480
NGSTYQPEVEGIQGIMSAYISALRNVSLAGPTLFGPVVSTATAIANQSLANNQQKYFVLL
Sbjct: 421 NGSTYQPEVEGIQGIMSAYISALRNVSLAGPTLFGPVVSTATAIANQSLANNQQKYFVLL 480
Query: 481 IVTDGVVTDFQETIDAIIKASDFPLSILVVGVGGADFKEMEFLDPNKGERLESSTGRVAS 540
IVTDGVVTDFQETIDAIIKASDFPLSILVVGVGGADFKEMEFLDPNKGERLESSTGRVAS
Sbjct: 481 IVTDGVVTDFQETIDAIIKASDFPLSILVVGVGGADFKEMEFLDPNKGERLESSTGRVAS 540
Query: 541 RDMIQFAPMKDAHGSGISTVQSLLAEIPGQFMTYMRTREIQAIS 584
RDMIQFAPMKDAHGSGISTVQSLLAEIPGQFMTYMRTREIQAIS
Sbjct: 541 RDMIQFAPMKDAHGSGISTVQSLLAEIPGQFMTYMRTREIQAIS 584
>Os05g0373300 Similar to BONZAI1
Length = 551
Score = 547 bits (1409), Expect = e-155, Method: Compositional matrix adjust.
Identities = 279/544 (51%), Positives = 367/544 (67%), Gaps = 61/544 (11%)
Query: 40 DRFLRSRG-AGASTQVELSLSASNLGDQEFFTKSNPMVIVYSKSKEGALEELGRTEVILN 98
D F + G G + +ELS SAS L + + F+KS+PM+++Y + K+ LEE+GRTEVILN
Sbjct: 46 DHFFNAAGLRGLYSPLELSFSASKLRNMDAFSKSDPMLVIYIR-KDARLEEIGRTEVILN 104
Query: 99 SLNPSWNARINVHYQFEVLQPIVFQVYDIDPQFHDVNEKMLKLEEQQFLGEAVCLLSEVI 158
SL PSW + + YQFE++QP+VF++YDID ++H+ K L L +Q FLGEA C LSE++
Sbjct: 105 SLEPSWITKATISYQFEIIQPLVFKIYDIDTRYHNTPVKTLNLAQQDFLGEACCNLSEIV 164
Query: 159 TKQNRLLTLKLGVS-EHNLPNPSKFGELNVQAEESAGSKAIMEMVFRCSDLEIKDLLSKS 217
T N LTL L S H L G + V AEES S+ +EM +LE KD+ SKS
Sbjct: 165 TN-NHSLTLNLRDSCGHTL-----LGTVTVHAEESNSSRMAVEMTLHALNLENKDVFSKS 218
Query: 218 DPFLLISRISESGVPVPICKTEVRKNDLNPKWKPVILNLQQIGSKENPLIIECFNFSSNG 277
D NPL++ECF+F S+G
Sbjct: 219 D---------------------------------------------NPLLVECFDFDSSG 233
Query: 278 KHDLIGKIVKSVAELEKMYHSQDGENFFVPASTAHDSHSKEVLKSQVYVEKYLENNRQTF 337
H+LIG ++ +LE +Y+S+ G NFF +H K LK Q++V+K+ E + TF
Sbjct: 234 DHELIGTFQTTITQLENVYNSKSGANFF-----SHKGQKK--LKGQLFVDKFQEKVQHTF 286
Query: 338 LDYISAGCQLNFMVAVDFTASNGNPRLPDSLHYIDPTGRPNAYQRAILEVGDVLQYYDPA 397
LDYIS+G +LNFMVAVDFTASNG+PR P SLHYIDP+GRPN+YQ+AIL VG+VLQ+YD
Sbjct: 287 LDYISSGFELNFMVAVDFTASNGDPRSPQSLHYIDPSGRPNSYQQAILGVGEVLQFYDND 346
Query: 398 KRFPSWGFGARPIDGPVSHCFNLNGSTYQPEVEGIQGIMSAYISALRNVSLAGPTLFGPV 457
+RFP+WGFGA+ G +SHCFNLN +T EV G++GIMSAY S L +V+LAGPTLFGP+
Sbjct: 347 RRFPAWGFGAKTPQGYISHCFNLNATTNDCEVVGVEGIMSAYTSTLYSVTLAGPTLFGPI 406
Query: 458 VSTATAIANQSLANNQQKYFVLLIVTDGVVTDFQETIDAIIKASDFPLSILVVGVGGADF 517
++ A IA+ SL KYFVLLI+TDGV+TD QET D+I++ASD PLSIL+VGVG ADF
Sbjct: 407 INKAAEIASHSLQYGNNKYFVLLIITDGVLTDIQETKDSIVRASDLPLSILIVGVGNADF 466
Query: 518 KEMEFLDPNKGERLESSTGRVASRDMIQFAPMKDAHGSGISTVQSLLAEIPGQFMTYMRT 577
K+ME LD + G+RLESSTGR+A+RD++QF PM+D G IS VQSLL E+PGQF+ YMR+
Sbjct: 467 KQMEILDGDNGKRLESSTGRIATRDIVQFVPMRDVQGGQISVVQSLLEELPGQFLAYMRS 526
Query: 578 REIQ 581
R+I+
Sbjct: 527 RDIK 530
>Os08g0135400 von Willebrand factor, type A domain containing protein
Length = 401
Score = 92.8 bits (229), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 120/237 (50%), Gaps = 42/237 (17%)
Query: 313 DSHSKEVLKSQVYVEKYLENNRQTFLDYISAGCQ------LNFMVAVDFTASN---GNPR 363
++H + +L + Y+ +N Q+ LD ++A + N ++ +DFT SN G
Sbjct: 33 ENHRRAMLTKKY---SYIPDNYQS-LDQVTAALRDQGLESSNLILGIDFTKSNEWTGKRS 88
Query: 364 LP-DSLHYIDPTGRPNAYQRAILEVGDVLQYYDPAKRFPSWGFGARPIDGPVSHCFNLNG 422
SLH I T PN Y++AI +G L +D P +GFG +H +N+
Sbjct: 89 FSGQSLHKIGST--PNPYEQAISIIGKTLAPFDDDNLIPCFGFGD-----ATTHDYNV-- 139
Query: 423 STYQPE---VEGIQGIMSAYISALRNVSLAGPTLFGPVVSTATAIANQSLANNQQKYFVL 479
++ P+ G + ++S Y + ++ L+GPT F P+V A I ++S +Y VL
Sbjct: 140 FSFHPDNSPCHGFEEVLSCYKKIVPHLRLSGPTSFAPIVEAAVDIVDRSGG----QYHVL 195
Query: 480 LIVTDGVVTDF------------QETIDAIIKASDFPLSILVVGVGGADFKEMEFLD 524
+IV DG VT + T+D+++ AS +PLSI++VGVG +++M+ D
Sbjct: 196 VIVADGQVTRSVDTSDNDLSPQERRTVDSVVMASSYPLSIVLVGVGDGPWEDMQKFD 252
>Os06g0608800 von Willebrand factor, type A domain containing protein
Length = 447
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 85/260 (32%), Positives = 112/260 (43%), Gaps = 68/260 (26%)
Query: 348 NFMVAVDFTASNG-------NPRLPDSLHYIDPTGRPNAYQRAILEVGDVLQYYDPAKRF 400
N +V +DFT SN N R LH I T PN Y++AI +G L +D
Sbjct: 90 NLIVGIDFTKSNEWTGKLSFNRRC---LHDIGNT--PNPYEQAISIIGRTLSAFDEDNLI 144
Query: 401 PSWGFGARPIDGPVSHCFNLNGSTYQPEV----------EGIQGIMSAYISALRNVSLAG 450
P +GFG + ST+ EV G + + Y + + LAG
Sbjct: 145 PCFGFG--------------DASTHDQEVFSFYPENRPCNGFEEALERYREIVPTLRLAG 190
Query: 451 PTLFGPVVSTATAIANQSLANNQQKYFVLLIVTDGVVT---DFQ---------ETIDAII 498
PT F P++ TA I + + +Y VLLI+ DG VT D Q +TIDAI+
Sbjct: 191 PTSFAPMIETAIGIVDSTGG----QYHVLLIIADGQVTRSVDTQSGQLSPQERDTIDAIV 246
Query: 499 KASDFPLSILVVGVGGADFKEMEFLDPNKGERLESSTGRVASRDMIQFAPMKDAHGSGIS 558
KAS FPLSI++VGVG + M D N R S D QF D I+
Sbjct: 247 KASQFPLSIVLVGVGDGPWDMMHQFDDNIPAR---------SFDNFQFVNFTDIMSKSIA 297
Query: 559 TVQ-------SLLAEIPGQF 571
+ S L EIP Q+
Sbjct: 298 ADRKEAEFALSALMEIPTQY 317
>Os01g0908700 Similar to Hnrpa2b1-prov protein
Length = 446
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 97/199 (48%), Gaps = 26/199 (13%)
Query: 348 NFMVAVDFTASN---GNPRLPD-SLHYIDPTGRPNAYQRAILEVGDVLQYYDPAKRFPSW 403
N +V +DFT SN G SLH+I + PN Y++AI +G L +D P +
Sbjct: 98 NLIVGIDFTKSNEWLGKFSFHGRSLHHI--SNAPNPYEQAISIIGQTLSKFDEDNLIPCF 155
Query: 404 GFGARPIDGPVSHCFNLNGSTYQPEVEGIQGIMSAYISALRNVSLAGPTLFGPVVSTATA 463
GFG CF + +P G +S Y + ++ LAGPT F P++ A
Sbjct: 156 GFGDATTHDQDVFCFYPD---LRP-CNGFSEALSRYRELVPHLRLAGPTSFAPIIEMAMT 211
Query: 464 IANQSLANNQQKYFVLLIVTDGVVTDF------------QETIDAIIKASDFPLSILVVG 511
I QS +Y VLLI+ DG VT Q+T+DAI++AS+ PLSI++VG
Sbjct: 212 IVEQSGG----QYHVLLIIADGQVTRSVDTASGQLSSQEQKTVDAIVRASELPLSIVLVG 267
Query: 512 VGGADFKEMEFLDPNKGER 530
VG + M+ D N R
Sbjct: 268 VGDGPWDMMKEFDDNIPSR 286
>Os12g0288400 Similar to Ubiquitin ligase protein mib (EC 6.3.2.-) (Mind bomb
protein)
Length = 546
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 116/257 (45%), Gaps = 62/257 (24%)
Query: 348 NFMVAVDFTASN---GNPRLPD-SLHYIDPTGRPNAYQRAILEVGDVLQYYDPAKRFPSW 403
N ++ +DFT SN G SLH+I + PN Y++AI +G L +D P +
Sbjct: 196 NLIIGIDFTKSNEWTGKRSFNGMSLHHIGDS--PNPYEQAITIIGQTLSAFDEDNLIPCY 253
Query: 404 GFGARPIDGPVSHCFNLNGSTYQPEV----------EGIQGIMSAYISALRNVSLAGPTL 453
GFG + ST+ +V G Q ++ Y + ++ L+GPT
Sbjct: 254 GFG--------------DASTHDQDVFAFYPDERPCNGFQEALARYREIVPHLRLSGPTS 299
Query: 454 FGPVVSTATAIANQSLANNQQKYFVLLIVTDGVVT-----DF-------QETIDAIIKAS 501
F P++ AT I QS +Y VL+I+ DG VT +F Q T+DAI++AS
Sbjct: 300 FSPIIEMATTIVEQSGG----QYHVLVIIADGQVTRSVDTEFGQLSTQEQMTVDAIVQAS 355
Query: 502 DFPLSILVVGVGGADFKEMEFLDPNKGERLESSTGRVASRDMIQFAPMKDAHGSGISTVQ 561
+FPLSI++VGVG + M+ D N R S D QF IS +
Sbjct: 356 EFPLSIILVGVGDGPWDMMKEFDDNIPAR---------SFDNFQFVNFTSIMSKKISQSK 406
Query: 562 -------SLLAEIPGQF 571
S L EIP Q+
Sbjct: 407 KETEFALSALMEIPLQY 423
>Os08g0494300 von Willebrand factor, type A domain containing protein
Length = 396
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 98/200 (49%), Gaps = 28/200 (14%)
Query: 348 NFMVAVDFTASN---GNPRLPD-SLHYIDPTGRPNAYQRAILEVGDVLQYYDPAKRFPSW 403
N +V +DFT SN G + SLH + P Y++AI +G L +D P +
Sbjct: 60 NLIVGIDFTKSNEWTGRVSFNNQSLHSLGHISNP--YEQAISIIGQTLSRFDEDNLIPCY 117
Query: 404 GFG-ARPIDGPVSHCFNLNGSTYQPEVEGIQGIMSAYISALRNVSLAGPTLFGPVVSTAT 462
GFG A D V + N +P +G + + Y + + LAGPT F P++ TA
Sbjct: 118 GFGDATTHDQKVFSFYPDN----KP-CDGFEQALDRYREIVPQLRLAGPTSFAPMIETAI 172
Query: 463 AIANQSLANNQQKYFVLLIVTDGVVT------------DFQETIDAIIKASDFPLSILVV 510
I + S +Y VLLI+ DG VT +ETIDAI+KASD+PLSI++V
Sbjct: 173 GIVDSSGG----QYHVLLIIADGQVTRSVDTGNGQLSPQERETIDAIVKASDYPLSIVLV 228
Query: 511 GVGGADFKEMEFLDPNKGER 530
GVG + M D N R
Sbjct: 229 GVGDGPWDMMRQFDDNIPSR 248
>Os01g0960500 Copine domain containing protein
Length = 387
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 118/250 (47%), Gaps = 29/250 (11%)
Query: 348 NFMVAVDFTASN-GNPRLP---DSLHYIDPTGRPNAYQRAILEVGDVLQYYDPAKRFPSW 403
N ++ +DFT SN + R SLH I T PN Y++AI +G L +D P +
Sbjct: 57 NLILGIDFTKSNEWSGRYSFGRKSLHAISAT--PNPYEQAISIIGRTLSPFDDDNLIPCF 114
Query: 404 GFG-ARPIDGPVSHCFNLNGSTYQPEVEGIQGIMSAYISALRNVSLAGPTLFGPVVSTAT 462
GFG A D V + + S G + ++ Y + +++L+GPT F P++ A
Sbjct: 115 GFGDASTHDQSVFSFYQDSRSCC-----GFEEVLERYRQIVPHLNLSGPTSFAPLIYAAI 169
Query: 463 AIANQSLANNQQKYFVLLIVTDGVVTDF-----------QETIDAIIKASDFPLSILVVG 511
++ + N+ +Y VL+I+ DG VT Q TI AI+ AS +PLSI++VG
Sbjct: 170 SV----VENSNLQYHVLVIIADGQVTTSNTKDGKLSPQEQATIQAIVDASYYPLSIVMVG 225
Query: 512 VGGADFKEMEFLDPNKGERLESSTGRVASRDMIQFAPMKDAHGSGISTVQSLLAEIPGQF 571
VG + M+ D +R + V +++ + KD + + L EIP Q+
Sbjct: 226 VGDGPWDAMQHFDDCIPDRAFDNFQFVNFTEIMSTS--KDMPKKEAAFALAALMEIPSQY 283
Query: 572 MTYMRTREIQ 581
R ++
Sbjct: 284 KATQGLRPLE 293
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,898,231
Number of extensions: 723423
Number of successful extensions: 1584
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1561
Number of HSP's successfully gapped: 9
Length of query: 584
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 478
Effective length of database: 11,501,117
Effective search space: 5497533926
Effective search space used: 5497533926
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)