BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0116500 Os02g0116500|AF093628
(335 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0116500 Similar to Protochlorophyllide reductase homol... 624 e-179
Os09g0570300 Similar to Short-chain dehydrogenase Tic32 132 5e-31
Os01g0151700 Similar to Short-chain dehydrogenase Tic32 121 9e-28
Os11g0181800 Similar to Short-chain dehydrogenase Tic32 114 1e-25
Os11g0181700 Similar to Short-chain dehydrogenase Tic32 114 1e-25
Os10g0548000 Similar to Short-chain dehydrogenase Tic32 107 2e-23
Os04g0291100 Similar to Short-chain dehydrogenase Tic32 100 2e-21
Os03g0115700 Short-chain dehydrogenase/reductase SDR family... 87 1e-17
Os09g0346600 Glucose/ribitol dehydrogenase family protein 86 5e-17
>Os02g0116500 Similar to Protochlorophyllide reductase homologue
Length = 335
Score = 624 bits (1610), Expect = e-179, Method: Compositional matrix adjust.
Identities = 302/322 (93%), Positives = 302/322 (93%)
Query: 14 DGVSFVVTGATSGIGLEIARQLALAGGHVVMAVRRTKLAQELIQKWQNDNSEIGKPLNAE 73
DGVSFVVTGATSGIGLEIARQLALAGGHVVMAVRRTKLAQELIQKWQNDNSEIGKPLNAE
Sbjct: 14 DGVSFVVTGATSGIGLEIARQLALAGGHVVMAVRRTKLAQELIQKWQNDNSEIGKPLNAE 73
Query: 74 VMELDLLSLDSVVKFADAWNARMAPLHVLINNAGIFSIGEPQRFSKDGYEEHMQVNHXXX 133
VMELDLLSLDSVVKFADAWNARMAPLHVLINNAGIFSIGEPQRFSKDGYEEHMQVNH
Sbjct: 74 VMELDLLSLDSVVKFADAWNARMAPLHVLINNAGIFSIGEPQRFSKDGYEEHMQVNHLAP 133
Query: 134 XXXXXXXXXXXXXXXXXRIVNVNSVMHTVGFVDAEDMNLTSGKRKFTSLMGYSNSKLAQI 193
RIVNVNSVMHTVGFVDAEDMNLTSGKRKFTSLMGYSNSKLAQI
Sbjct: 134 ALLAVLLLPSLLRGSPSRIVNVNSVMHTVGFVDAEDMNLTSGKRKFTSLMGYSNSKLAQI 193
Query: 194 KFSSMLHRRIPAEAEINVICASPGIVHTNVARDLPKLVVAAYHLIPYFIFDAQEGSRSTL 253
KFSSMLHRRIPAEAEINVICASPGIVHTNVARDLPKLVVAAYHLIPYFIFDAQEGSRSTL
Sbjct: 194 KFSSMLHRRIPAEAEINVICASPGIVHTNVARDLPKLVVAAYHLIPYFIFDAQEGSRSTL 253
Query: 254 FAASDPQVPDYCEMLKSEDWPVCACISYDCNPMNASEESHNLETSQLVWEKTLEMIGLPP 313
FAASDPQVPDYCEMLKSEDWPVCACISYDCNPMNASEESHNLETSQLVWEKTLEMIGLPP
Sbjct: 254 FAASDPQVPDYCEMLKSEDWPVCACISYDCNPMNASEESHNLETSQLVWEKTLEMIGLPP 313
Query: 314 DAVDKFIEGESVQCRYGQQKAE 335
DAVDKFIEGESVQCRYGQQKAE
Sbjct: 314 DAVDKFIEGESVQCRYGQQKAE 335
>Os09g0570300 Similar to Short-chain dehydrogenase Tic32
Length = 316
Score = 132 bits (331), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 146/302 (48%), Gaps = 25/302 (8%)
Query: 15 GVSFVVTGATSGIGLEIARQLALAGGHVVMAVRRTKLAQELIQKWQNDNSEIGKPLNAEV 74
G++ +VTGA+SGIG E AR LA+ G HVVMAVR AQ + D + ++
Sbjct: 32 GLTAIVTGASSGIGAETARVLAIRGAHVVMAVRNLAAAQPVRDAILAD----APAASLDL 87
Query: 75 MELDLLSLDSVVKFADAWNARMAPLHVLINNAGIFSIGEPQRFSKDGYEEHMQVNHX--- 131
MELDL S+DSV FA + A+ PL++LINNAG+ + P SKDG E NH
Sbjct: 88 MELDLASMDSVRAFASDFAAKGLPLNILINNAGVMAT--PFSLSKDGIELQFATNHVGHF 145
Query: 132 --XXXXXXXXXXXXXXXXXXXRIVNVNSVMHTVGFVDAEDMNLTSGKRKFTSLMGYSNSK 189
RIVNV+S H + + + + ++ S+ Y SK
Sbjct: 146 LLTHLLLETMKKTSRESNVEGRIVNVSSEGHRFAYREGIRFAKINDESEYNSIGAYGQSK 205
Query: 190 LAQIKFSSMLHRRIPAEAEINVICAS--PGIVHTNVARDLPKLVVAAYHLIPYFIFDAQE 247
LA I ++ L RR E +N+ S PG + TN+ R L V L + +AQ+
Sbjct: 206 LANILHANELARRFKDEG-VNITANSLHPGSIITNLLRHHSILDVLHRTLGKLVLKNAQQ 264
Query: 248 GSRSTLFAASDPQVPDYCEMLKSEDWPVCACISYDCNPMNASEESHNLETSQLVWEKTLE 307
G+ +T + A PQV V D N ASE+ +++E ++ +WE ++E
Sbjct: 265 GAATTCYVALHPQVKG-----------VSGKYFSDSNVNEASEKGNDMELAKRLWEYSIE 313
Query: 308 MI 309
+I
Sbjct: 314 LI 315
>Os01g0151700 Similar to Short-chain dehydrogenase Tic32
Length = 321
Score = 121 bits (303), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 88/302 (29%), Positives = 143/302 (47%), Gaps = 25/302 (8%)
Query: 15 GVSFVVTGATSGIGLEIARQLALAGGHVVMAVRRTKLAQELIQKWQNDNSEIGKPLNAEV 74
G++ +VTG SGIGLE +R A+ G HV++A R T+ A + +K +N + + +V
Sbjct: 33 GLTVIVTGGASGIGLETSRVFAMRGAHVIIAARNTEAASVVRKKIIEENPKA----HIDV 88
Query: 75 MELDLLSLDSVVKFADAWNARMAPLHVLINNAGIFSIGEPQRFSKDGYEEHMQVNH---- 130
++LDL SL SV FAD +N+ PL++LINNAG+ P S+DG E NH
Sbjct: 89 LKLDLSSLKSVRAFADQFNSMNLPLNILINNAGVMFC--PFGLSEDGVEMQFATNHLGHF 146
Query: 131 -XXXXXXXXXXXXXXXXXXXXRIVNVNSVMHTVGFVDAEDMNLTSGKRKFTSLMGYSNSK 189
RIVN++SV H + + + + ++ + M Y SK
Sbjct: 147 LLTNLLLDNMKATAKSTGIEGRIVNLSSVAHLHTYPKGIEFDKLNDEKTYDDKMAYGQSK 206
Query: 190 LAQIKFSSMLHRRIPAE-AEINVICASPGIVHTNVARDLPKLVVAAYHLIPYFIFDA-QE 247
LA I + L RR+ E A I + C PG++ TN+ R ++ Y ++ + +
Sbjct: 207 LANILHAKELSRRLKEEGANITINCVHPGLIMTNLMRH-SFFLMRVLQFATYILWKSVPQ 265
Query: 248 GSRSTLFAASDPQVPDYCEMLKSEDWPVCACISYDCNPMNASEESHNLETSQLVWEKTLE 307
G+ +T + +PQ+ V DCN S + N ++ +WE + +
Sbjct: 266 GAATTCYVGLNPQLKG-----------VTGQYFADCNVEKTSRFARNDALAKQLWEFSEK 314
Query: 308 MI 309
+I
Sbjct: 315 LI 316
>Os11g0181800 Similar to Short-chain dehydrogenase Tic32
Length = 329
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/303 (29%), Positives = 141/303 (46%), Gaps = 29/303 (9%)
Query: 16 VSFVVTGATSGIGLEIARQLALAGGHVVMAVRRTKLAQELIQKWQND--NSEIGKPLNAE 73
++ VVTGAT+GIG E AR LAL G V++ R + ++ Q + +S++
Sbjct: 36 LTVVVTGATNGIGKETARVLALRGAEVILPARTLESGMKVKQSLAEEIPSSKL------H 89
Query: 74 VMELDLLSLDSVVKFADAWNARMAPLHVLINNAGIFSIGEPQRFSKDGYEEHMQVNHX-- 131
VME+DL SLDSV FA ++N+ L+VLINNAG+ S P SKDG E NH
Sbjct: 90 VMEMDLSSLDSVRSFAKSFNSSYRHLNVLINNAGVMSC--PFGLSKDGIELQFATNHVGH 147
Query: 132 ---XXXXXXXXXXXXXXXXXXXRIVNVNSVMHTVGFVDAEDMNLTSGKRKFTSLMGYSNS 188
RI+NV+S+ H D++ + K K+ Y +S
Sbjct: 148 FLLTNLLLDKMKATAKETGLQGRIINVSSISHRGSDGSCFDLDKLNDKSKYRPFKAYGHS 207
Query: 189 KLAQIKFSSMLHRRIPAEA-EINVICASPGIVHTNVARDL--PKLVVAAYHLIPYFIFDA 245
KLA I ++ L RR E + PG++ TN+ R + L+++ + ++ F+
Sbjct: 208 KLANILHANELSRRFQEEGCNLTANSLHPGVIATNLPRHILTNSLIISIFSVMKPFLKSI 267
Query: 246 QEGSRSTLFAASDPQVPDYCEMLKSEDWPVCACISYDCNPMNASEESHNLETSQLVWEKT 305
+G+ + + A P + D V DCN + + + E ++ +WE +
Sbjct: 268 PQGAATNCYLALHPGLKD-----------VSGKYFADCNEATPTAVARDAELAKKLWEFS 316
Query: 306 LEM 308
E+
Sbjct: 317 EEL 319
>Os11g0181700 Similar to Short-chain dehydrogenase Tic32
Length = 332
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/302 (28%), Positives = 145/302 (48%), Gaps = 25/302 (8%)
Query: 16 VSFVVTGATSGIGLEIARQLALAGGHVVMAVRRTKLAQELIQKWQNDNSEIGKPLNAEVM 75
++ +VTGAT+GIG E AR LA G V++ R + + Q + G L+ VM
Sbjct: 36 LTAIVTGATNGIGRETARVLARRGAEVIIPARTMESGNAVKQSIAEEVP--GSRLH--VM 91
Query: 76 ELDLLSLDSVVKFADAWNARMAPLHVLINNAGIFSIGEPQRFSKDGYEEHMQVNHX---- 131
E+DL SLDSV +FA A+++ L++LINNAGI +G P + SKDG E NH
Sbjct: 92 EMDLASLDSVRRFATAFDSSHTHLNILINNAGI--MGCPFKLSKDGIELQFATNHVGHFL 149
Query: 132 -XXXXXXXXXXXXXXXXXXXRIVNVNSVMHTVGFVDAEDMNLTSGKRKFTSLMGYSNSKL 190
RIVNV+S+ H D+N + K ++ L+ Y++SKL
Sbjct: 150 LTNLLLDKMKSTARKTGVQGRIVNVSSIAHKRSDGSCFDLNKLNDKSRYKPLIAYAHSKL 209
Query: 191 AQIKFSSMLHRRIPAEA-EINVICASPGIVHTNVARDL--PKLVVAAYHLIPYFIFDAQE 247
A I ++ L +R E + PG++ TN+ R + ++V+ + F+ + Q+
Sbjct: 210 ANILHANELAKRFQEEGCNLTANSLHPGVILTNITRYVVTNSVMVSILSVGNLFLKNTQQ 269
Query: 248 GSRSTLFAASDPQVPDYCEMLKSEDWPVCACISYDCNPMNASEESHNLETSQLVWEKTLE 307
G+ +T + A P++ D V DC + + E ++ +W+ + +
Sbjct: 270 GAATTCYLALHPELKD-----------VSGKYFADCKEATPRPAARDAELAKRLWDFSEQ 318
Query: 308 MI 309
++
Sbjct: 319 LV 320
>Os10g0548000 Similar to Short-chain dehydrogenase Tic32
Length = 319
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/299 (31%), Positives = 141/299 (47%), Gaps = 31/299 (10%)
Query: 15 GVSFVVTGATSGIGLEIARQLALAGGHVVMAVRRTKL---AQELIQKWQNDNSEIGKPLN 71
G++ VVTGA+SGIGLE R LAL G VVMAVR A+E I+ +EI +
Sbjct: 31 GLAAVVTGASSGIGLETTRVLALRGVRVVMAVRNVAAGHKAREAIR------AEIHGAI- 83
Query: 72 AEVMELDLLSLDSVVKFADAWNARMAPLHVLINNAGIFSIGEPQRFSKDGYEEHMQVNH- 130
V+E+DL S+DSV +FA +++ PL++LINNAGI S + S DG E H NH
Sbjct: 84 VHVLEMDLSSMDSVRRFASEFDSLNLPLNILINNAGILS--KDCIRSIDGLELHFATNHI 141
Query: 131 ----XXXXXXXXXXXXXXXXXXXXRIVNVNSVMHTVGFVDAEDMNLTSGKRKFTSLMGYS 186
RI+NV+S H + + + + +F++ + Y
Sbjct: 142 GHFLLTNLLLENMKSTSRTTGVEGRIINVSSSGHILTYPEGICFDSVKDLSRFSTYIAYG 201
Query: 187 NSKLAQIKFSSMLHRRIPAEA-EINVICASPGIVHTNVARDLPKLVVAAYHLIPYFIFDA 245
SKLA I S+ L R + + I+ PG V TN+ ++ + A + I +
Sbjct: 202 QSKLANILHSTELARILKGDGVNISANAIHPGFVGTNLFKNWT-MANAVVNTIGRIVCKT 260
Query: 246 -QEGSRSTLFAASDPQVPDYCEMLKSEDWPVCACISYDCNPMNASEESHNLETSQLVWE 303
++G+ +T + A PQV S +CN S ++ N E ++ +WE
Sbjct: 261 VEQGAATTCYVALHPQVTGISGKYFS-----------NCNLETPSSQASNAELAKKLWE 308
>Os04g0291100 Similar to Short-chain dehydrogenase Tic32
Length = 314
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/304 (27%), Positives = 137/304 (45%), Gaps = 29/304 (9%)
Query: 15 GVSFVVTGATSGIGLEIARQLALAGGHVVMAVRRTKLAQELIQKWQNDNSEIGKPLNA-- 72
G+ VVTGA+SGIG E R LA+ G HVVM VR + + EI + L A
Sbjct: 30 GLVAVVTGASSGIGAETCRVLAMRGLHVVMGVRNSSAGARV-------RDEIVRQLPAAK 82
Query: 73 -EVMELDLLSLDSVVKFADAWNARMAPLHVLINNAGIFSIGEPQRFSKDGYEEHMQVNH- 130
E+++LDL + SV +FA+ +NA PL++L+NNAGI + P + S++G E H NH
Sbjct: 83 IEMLDLDLSLMSSVRRFAENFNALNLPLNILVNNAGIAFV--PFKLSEEGIELHFSTNHL 140
Query: 131 ----XXXXXXXXXXXXXXXXXXXXRIVNVNSVMHTVGFVDAEDMNLTSGKRKFTSLMGYS 186
R+V V S + + + + + + + + Y
Sbjct: 141 GHFLLTDLLLEKMKVTAIESGIEGRVVIVASNSYKHPYREGIRFDKINDESGYNKIFAYG 200
Query: 187 NSKLAQIKFSSMLHRRIPAE-AEINVICASPGIVHTNVARDLPKLVVAAYHLIPYFIFDA 245
SKLA I S++L + + A++ V PG V TN+ R + L +F+
Sbjct: 201 QSKLANILHSNLLSSNLKEQDAKVTVNSLHPGAVVTNIMRHWYFVNGMLSTLGKFFVKGV 260
Query: 246 QEGSRSTLFAASDPQVPDYCEMLKSEDWPVCACISYDCNPMNASEESHNLETSQLVWEKT 305
++G+ + + A PQV V DCN + ++ ++ +W+ +
Sbjct: 261 EQGAATVCYVALHPQVAG-----------VTGKYFVDCNVTELKSHALDMGLAKRLWDFS 309
Query: 306 LEMI 309
L +I
Sbjct: 310 LNLI 313
>Os03g0115700 Short-chain dehydrogenase/reductase SDR family protein
Length = 332
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 140/303 (46%), Gaps = 25/303 (8%)
Query: 16 VSFVVTGATSGIGLEIARQLALAGGHVVMAVRRTKLAQELIQKWQNDNSEIGKPLNAEVM 75
++ ++TGATSGIG E AR LA G VV+ R K A+++ + + + + V+
Sbjct: 33 ITAIITGATSGIGAETARVLAKRGARVVIPARNVKAAEDMRARIRGECPGA----DVLVL 88
Query: 76 ELDLLSLDSVVKFADAWNARMAPLHVLINNAGIFSIGEPQRFSKDGYEEHMQVNH----- 130
LDL SL SV FAD + + PLH+LINNAG FS G+ S+DG E N+
Sbjct: 89 PLDLSSLASVRAFADRFLSLGLPLHLLINNAGKFSHGQLA-LSEDGVEMTFATNYLGHFL 147
Query: 131 XXXXXXXXXXXXXXXXXXXXRIVNVNSVMHTVGFVD-AEDMNLTSGKR-KFTSLMGYSNS 188
RIVNV+S +H+ D AE ++L + ++ + + Y+ S
Sbjct: 148 LTKLLLGRMAETAAATGVQGRIVNVSSSVHSWFAGDWAEYLDLVTRRKIAYDATQAYAVS 207
Query: 189 KLAQIKFSSMLHRRIP-AEAEINVICASPGIVHTNVARDLPKLVVAAYHLIPYFIFDA-Q 246
KLA + + L R+ A + V C PGIV T + RD LV L+ +
Sbjct: 208 KLANVLHTKELAVRLKEMGANVTVNCVHPGIVRTRLNRDRDGLVTDLVFLLLSKLLKTIP 267
Query: 247 EGSRSTLFAASDPQVPDYCEMLKSEDWPVCACISYDCNPMNASEESHNLETSQLVWEKTL 306
+ + +T + A+ P++ V DCN S + N ++ +W+ +
Sbjct: 268 QAAATTCYVAAHPRLAG-----------VSGRYFADCNEALPSPAATNRHEAERLWQISE 316
Query: 307 EMI 309
M+
Sbjct: 317 SML 319
>Os09g0346600 Glucose/ribitol dehydrogenase family protein
Length = 369
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 109/225 (48%), Gaps = 21/225 (9%)
Query: 19 VVTGATSGIGLEIARQLALAGGHVVMAVRRTKLAQELIQKWQNDNSEIGKPLNAEVMELD 78
V+TGATSG+G A LA G HV++A R ++L E +Q+ ++ + + E ++D
Sbjct: 65 VITGATSGLGKAAAAALAREGYHVILAGRSSQLLSETVQQIRDQQPDA----HLEAFQID 120
Query: 79 LLSLDSVVKFADAWNARMA------PLHVLINNAGIFSIGEPQRFSKDGYEEHMQVNHXX 132
L S S+ KF + N + + +L+NNAGI + + R ++DG +E +Q N+
Sbjct: 121 LSSYKSIKKFETSLNQWIKDSNMEHSIQLLVNNAGI--LAKSYRITEDGLDEMIQANYIG 178
Query: 133 -XXXXXXXXXXXXXXXXXXRIVNVNSVMH-TVGFVDAEDMNLTS-------GKRKFTSLM 183
R+VN+ S H V ++ + L+ +R +
Sbjct: 179 PFVLTNILLPLLKNSSTPSRVVNLTSFTHRCVSEINLSEKGLSGVRFGHWPARRSYLLAS 238
Query: 184 GYSNSKLAQIKFSSMLHRRIPAEAEINVICASPGIVHTNVARDLP 228
Y +K + FS LHR++ + ++V+ A PG+V T + R+LP
Sbjct: 239 TYEYTKFCLLMFSYELHRQLHLSSGVSVMAADPGVVQTGIMRELP 283
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.132 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,621,773
Number of extensions: 342982
Number of successful extensions: 1161
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 1151
Number of HSP's successfully gapped: 9
Length of query: 335
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 234
Effective length of database: 11,762,187
Effective search space: 2752351758
Effective search space used: 2752351758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)