Os02g0116500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protochlorophyllide reductase homologue.
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Os02g0116500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protochlorophyllide reductase homologue.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.38 | 0.275 | 11.5 | -0.483 | 2.04 | -0.817 | 0.876 | 1.54 | -0.358 | 7.84 | 24.9 | 1487 | -- | -- |
| 35.56 | 0.278 | 11.5 | -0.0364 | 2.09 | -0.635 | 0.799 | -- | -0.222 | 7.77 | 23.1 | 1815 | -- | -- |
| 36.58 | 0.282 | 11.5 | -0.459 | 2.06 | -0.821 | -- | 1.54 | -0.358 | 7.81 | 24.86 | 1522 | -- | -- |
| 37.52 | 0.285 | 11.5 | -0.00213 | 2.06 | -0.625 | -- | -- | -0.223 | 7.77 | 23.08 | 1688 | -- | -- |
| 260.4 | 0.752 | 11.5 | -0.303 | -- | -0.846 | -- | 0.975 | -0.298 | -- | 24.5 | 1406 | -- | -- |
| 52.07 | 0.338 | 11.4 | 0.223 | 2.06 | -- | 0.882 | -- | 0.0335 | 7.77 | -- | -- | -- | -- |
| 54.3 | 0.345 | 11.4 | 0.246 | 2.06 | -- | -- | -- | 0.0323 | 7.76 | -- | -- | -- | -- |
| 261.31 | 0.756 | 11.5 | 0.0471 | -- | -0.556 | -- | -- | -0.142 | -- | 23.08 | 1688 | -- | -- |
| 37.52 | 0.285 | 11.5 | -- | 2.06 | -0.626 | -- | -- | -0.222 | 7.77 | 23.07 | 1688 | -- | -- |
| 283.78 | 0.787 | 11.5 | 0.271 | -- | -- | -- | -- | 0.0616 | -- | -- | -- | -- | -- |
| 55.89 | 0.35 | 11.4 | -- | 2.06 | -- | -- | -- | 0.0049 | 7.75 | -- | -- | -- | -- |
| 261.37 | 0.755 | 11.5 | -- | -- | -0.563 | -- | -- | -0.15 | -- | 23.08 | 1688 | -- | -- |
| 285.72 | 0.789 | 11.5 | -- | -- | -- | -- | -- | 0.0315 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.83 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 19 |
| 20 | 33.38 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 21 |
| 23 | 33.43 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 21 |
| 24 | 33.46 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 35 | 33.77 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 45 | 33.99 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 70 | 34.25 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 19 |
| 92 | 34.41 | temperature | 25 | 1440 | < th | dose independent | sin | 17 | NA |
| 97 | 34.43 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 105 | 34.47 | temperature | 25 | 1440 | > th | dose independent | sin | 17 | NA |
| 109 | 34.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 120 | 34.55 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 21 |
| 125 | 34.56 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 21 |
| 138 | 34.60 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |
| 140 | 34.61 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 17 |
| 143 | 34.61 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 17 |
| 150 | 34.64 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 16 |
| 181 | 34.69 | temperature | 25 | 1440 | < th | dose independent | rect. | 1 | 22 |
| 190 | 34.71 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 209 | 34.75 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 232 | 34.78 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 9 |
| 233 | 34.78 | temperature | 25 | 1440 | > th | dose independent | rect. | 13 | 13 |
| 234 | 34.78 | temperature | 25 | 1440 | < th | dose independent | rect. | 13 | 13 |
| 255 | 34.80 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 262 | 34.81 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 265 | 34.82 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 296 | 34.85 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 9 |
| 314 | 34.86 | temperature | 25 | 1440 | > th | dose independent | rect. | 1 | 22 |
| 316 | 34.86 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 319 | 34.87 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 7 |
| 356 | 34.89 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 374 | 34.92 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 383 | 34.93 | temperature | 25 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 431 | 34.97 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 448 | 34.98 | temperature | 25 | 1440 | < th | dose independent | rect. | 21 | 23 |
| 452 | 34.99 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 458 | 34.99 | temperature | 25 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 460 | 34.99 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 465 | 35.00 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 483 | 35.02 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 530 | 35.07 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 23 |
| 665 | 35.24 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 708 | 35.30 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 733 | 35.33 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 868 | 35.45 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 907 | 35.49 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 944 | 35.52 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 945 | 35.52 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 948 | 35.53 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 4 |
| 962 | 35.54 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 976 | 35.54 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 978 | 35.55 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 5 |