Os04g0291100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Short-chain dehydrogenase Tic32.
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Os04g0291100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Short-chain dehydrogenase Tic32.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.65 | 0.281 | 9.56 | -0.851 | 0.704 | -0.86 | -0.396 | 1.16 | 0.057 | 3.59 | 24.19 | 351 | -- | -- |
| 36.98 | 0.283 | 9.53 | -0.696 | 0.717 | -1.03 | -0.232 | -- | 0.11 | 3.36 | 23.43 | 307 | -- | -- |
| 36.09 | 0.28 | 9.55 | -0.832 | 0.699 | -0.859 | -- | 1.1 | 0.0605 | 3.59 | 24.2 | 367 | -- | -- |
| 36.95 | 0.283 | 9.53 | -0.68 | 0.713 | -1.13 | -- | -- | 0.117 | 3.51 | 22.76 | 316 | -- | -- |
| 54.02 | 0.342 | 9.59 | -1.1 | -- | -0.878 | -- | 2.04 | -0.0344 | -- | 28.79 | 1113 | -- | -- |
| 50.6 | 0.333 | 9.5 | -0.429 | 0.624 | -- | -0.154 | -- | 0.265 | 3.39 | -- | -- | -- | -- |
| 50.68 | 0.333 | 9.5 | -0.426 | 0.624 | -- | -- | -- | 0.266 | 3.41 | -- | -- | -- | -- |
| 58.34 | 0.356 | 9.53 | -0.722 | -- | -1.2 | -- | -- | 0.122 | -- | 21.95 | 1122 | -- | -- |
| 47.76 | 0.322 | 9.51 | -- | 0.688 | -0.79 | -- | -- | 0.218 | 3.47 | 22.96 | 300 | -- | -- |
| 72.55 | 0.398 | 9.5 | -0.4 | -- | -- | -- | -- | 0.283 | -- | -- | -- | -- | -- |
| 55.47 | 0.348 | 9.49 | -- | 0.615 | -- | -- | -- | 0.314 | 3.41 | -- | -- | -- | -- |
| 68.4 | 0.385 | 9.5 | -- | -- | -1.15 | -- | -- | 0.282 | -- | 18.56 | 983 | -- | -- |
| 76.77 | 0.409 | 9.49 | -- | -- | -- | -- | -- | 0.327 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.43 | temperature | 30 | 720 | < th | dose dependent | sin | 15 | NA |
| 3 | 34.70 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 16 |
| 4 | 34.70 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 17 |
| 13 | 34.85 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 13 |
| 17 | 34.87 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 19 |
| 41 | 35.12 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 16 |
| 42 | 35.14 | temperature | 10 | 720 | > th | dose dependent | sin | 14 | NA |
| 47 | 35.17 | temperature | 25 | 270 | < th | dose dependent | rect. | 17 | 18 |
| 78 | 35.43 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 15 |
| 94 | 35.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 8 |
| 145 | 35.91 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 12 |
| 327 | 36.61 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 366 | 36.74 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 367 | 36.74 | temperature | 30 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 422 | 36.90 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 20 |
| 481 | 37.03 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 514 | 37.08 | temperature | 25 | 1440 | < th | dose dependent | sin | 22 | NA |
| 517 | 37.08 | temperature | 25 | 10 | < th | dose dependent | rect. | 20 | 16 |
| 636 | 37.23 | temperature | 15 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 656 | 37.25 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 12 |
| 720 | 37.32 | temperature | 25 | 270 | < th | dose dependent | sin | 11 | NA |
| 778 | 37.36 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 18 |
| 916 | 37.47 | temperature | 10 | 1440 | > th | dose dependent | sin | 23 | NA |