BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0291100 Os04g0291100|AK063968
(314 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0291100 Similar to Short-chain dehydrogenase Tic32 525 e-149
Os04g0291000 Glucose/ribitol dehydrogenase family protein 333 1e-91
Os09g0570300 Similar to Short-chain dehydrogenase Tic32 310 1e-84
Os01g0151700 Similar to Short-chain dehydrogenase Tic32 292 3e-79
Os10g0548000 Similar to Short-chain dehydrogenase Tic32 271 4e-73
Os11g0181700 Similar to Short-chain dehydrogenase Tic32 247 6e-66
Os11g0181800 Similar to Short-chain dehydrogenase Tic32 239 2e-63
Os03g0115700 Short-chain dehydrogenase/reductase SDR family... 153 1e-37
Os10g0547950 Similar to Short-chain dehydrogenase Tic32 80 2e-15
Os02g0116500 Similar to Protochlorophyllide reductase homol... 79 3e-15
Os10g0547600 74 1e-13
>Os04g0291100 Similar to Short-chain dehydrogenase Tic32
Length = 314
Score = 525 bits (1352), Expect = e-149, Method: Compositional matrix adjust.
Identities = 263/314 (83%), Positives = 263/314 (83%)
Query: 1 MWXXXXXXXXXXXXXXXTAEEVTAAVDGSGLVAVVTGASSGIGAETCRVLAMRGLHVVMG 60
MW TAEEVTAAVDGSGLVAVVTGASSGIGAETCRVLAMRGLHVVMG
Sbjct: 1 MWGLLRRRSPSGFSPSSTAEEVTAAVDGSGLVAVVTGASSGIGAETCRVLAMRGLHVVMG 60
Query: 61 VRNSSAGARVRDEIVRQLPAAKIEXXXXXXXXXXXVRRFAENFNALNLPLNILVNNAGIA 120
VRNSSAGARVRDEIVRQLPAAKIE VRRFAENFNALNLPLNILVNNAGIA
Sbjct: 61 VRNSSAGARVRDEIVRQLPAAKIEMLDLDLSLMSSVRRFAENFNALNLPLNILVNNAGIA 120
Query: 121 FVPFKLSEEGIELHFSTNHXXXXXXXXXXXEKMKVTAIESGIEGRVVIVASNSYKHPYRE 180
FVPFKLSEEGIELHFSTNH EKMKVTAIESGIEGRVVIVASNSYKHPYRE
Sbjct: 121 FVPFKLSEEGIELHFSTNHLGHFLLTDLLLEKMKVTAIESGIEGRVVIVASNSYKHPYRE 180
Query: 181 GIRFDKINDESGYNKIFAYGQSKXXXXXXXXXXXXXXKEQDAKVTVNSLHPGAVVTNIMR 240
GIRFDKINDESGYNKIFAYGQSK KEQDAKVTVNSLHPGAVVTNIMR
Sbjct: 181 GIRFDKINDESGYNKIFAYGQSKLANILHSNLLSSNLKEQDAKVTVNSLHPGAVVTNIMR 240
Query: 241 HWYFVNGMLSTLGKFFVKGVEQGAATVCYVALHPQVAGVTGKYFVDCNVTELKSHALDMG 300
HWYFVNGMLSTLGKFFVKGVEQGAATVCYVALHPQVAGVTGKYFVDCNVTELKSHALDMG
Sbjct: 241 HWYFVNGMLSTLGKFFVKGVEQGAATVCYVALHPQVAGVTGKYFVDCNVTELKSHALDMG 300
Query: 301 LAKRLWDFSLNLIH 314
LAKRLWDFSLNLIH
Sbjct: 301 LAKRLWDFSLNLIH 314
>Os04g0291000 Glucose/ribitol dehydrogenase family protein
Length = 280
Score = 333 bits (853), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 180/313 (57%), Positives = 203/313 (64%), Gaps = 34/313 (10%)
Query: 1 MWXXXXXXXXXXXXXXXTAEEVTAAVDGSGLVAVVTGASSGIGAETCRVLAMRGLHVVMG 60
MW TAEEVTA +DGSGLVA++TGASSGIGAETCRVL MRG++VVMG
Sbjct: 1 MWGLLRRSSSSGFSSSSTAEEVTAGIDGSGLVALITGASSGIGAETCRVLVMRGVYVVMG 60
Query: 61 VRNSSAGARVRDEIVRQLPAAKIEXXXXXXXXXXXVRRFAENFNALNLPLNILVNNAGIA 120
VRN SAGARVRDEI++Q+P+AK+E LNL L+ + ++G
Sbjct: 61 VRNLSAGARVRDEILKQVPSAKMEI--------------------LNLDLSSM--SSGFV 98
Query: 121 FVPFKLSEEGIELHFSTNHXXXXXXXXXXXEKMKVTAIESGIEGRVVIVASNSYKHPYRE 180
P S+ MKVTAIESG EGRVVIVAS SY Y
Sbjct: 99 LCP------------SSFQRMTLSCILQRITSMKVTAIESGKEGRVVIVASVSYSLSYPG 146
Query: 181 GIRFDKINDESGYNKIFAYGQSKXXXXXXXXXXXXXXKEQDAKVTVNSLHPGAVVTNIMR 240
GI FDKINDESGYN+ AYGQSK KEQDAKV VNSLHPGAV TNI+
Sbjct: 147 GICFDKINDESGYNRFLAYGQSKLANILHSNLLSSHLKEQDAKVIVNSLHPGAVATNILH 206
Query: 241 HWYFVNGMLSTLGKFFVKGVEQGAATVCYVALHPQVAGVTGKYFVDCNVTELKSHALDMG 300
HW + G + +GK+FVKGVEQGAATVCYVALHPQVAGVTGKYF DCN+TELKSHALDM
Sbjct: 207 HWCPLYGAIRAIGKYFVKGVEQGAATVCYVALHPQVAGVTGKYFSDCNITELKSHALDMD 266
Query: 301 LAKRLWDFSLNLI 313
LAKRLWDFSL+ I
Sbjct: 267 LAKRLWDFSLSQI 279
>Os09g0570300 Similar to Short-chain dehydrogenase Tic32
Length = 316
Score = 310 bits (794), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 155/296 (52%), Positives = 194/296 (65%)
Query: 18 TAEEVTAAVDGSGLVAVVTGASSGIGAETCRVLAMRGLHVVMGVRNSSAGARVRDEIVRQ 77
TA++VTA + +GL A+VTGASSGIGAET RVLA+RG HVVM VRN +A VRD I+
Sbjct: 20 TADQVTAGLSAAGLTAIVTGASSGIGAETARVLAIRGAHVVMAVRNLAAAQPVRDAILAD 79
Query: 78 LPAAKIEXXXXXXXXXXXVRRFAENFNALNLPLNILVNNAGIAFVPFKLSEEGIELHFST 137
PAA ++ VR FA +F A LPLNIL+NNAG+ PF LS++GIEL F+T
Sbjct: 80 APAASLDLMELDLASMDSVRAFASDFAAKGLPLNILINNAGVMATPFSLSKDGIELQFAT 139
Query: 138 NHXXXXXXXXXXXEKMKVTAIESGIEGRVVIVASNSYKHPYREGIRFDKINDESGYNKIF 197
NH E MK T+ ES +EGR+V V+S ++ YREGIRF KINDES YN I
Sbjct: 140 NHVGHFLLTHLLLETMKKTSRESNVEGRIVNVSSEGHRFAYREGIRFAKINDESEYNSIG 199
Query: 198 AYGQSKXXXXXXXXXXXXXXKEQDAKVTVNSLHPGAVVTNIMRHWYFVNGMLSTLGKFFV 257
AYGQSK K++ +T NSLHPG+++TN++RH ++ + TLGK +
Sbjct: 200 AYGQSKLANILHANELARRFKDEGVNITANSLHPGSIITNLLRHHSILDVLHRTLGKLVL 259
Query: 258 KGVEQGAATVCYVALHPQVAGVTGKYFVDCNVTELKSHALDMGLAKRLWDFSLNLI 313
K +QGAAT CYVALHPQV GV+GKYF D NV E DM LAKRLW++S+ LI
Sbjct: 260 KNAQQGAATTCYVALHPQVKGVSGKYFSDSNVNEASEKGNDMELAKRLWEYSIELI 315
>Os01g0151700 Similar to Short-chain dehydrogenase Tic32
Length = 321
Score = 292 bits (747), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 141/296 (47%), Positives = 189/296 (63%)
Query: 18 TAEEVTAAVDGSGLVAVVTGASSGIGAETCRVLAMRGLHVVMGVRNSSAGARVRDEIVRQ 77
TAE+VTA VD +GL +VTG +SGIG ET RV AMRG HV++ RN+ A + VR +I+ +
Sbjct: 21 TAEQVTAGVDATGLTVIVTGGASGIGLETSRVFAMRGAHVIIAARNTEAASVVRKKIIEE 80
Query: 78 LPAAKIEXXXXXXXXXXXVRRFAENFNALNLPLNILVNNAGIAFVPFKLSEEGIELHFST 137
P A I+ VR FA+ FN++NLPLNIL+NNAG+ F PF LSE+G+E+ F+T
Sbjct: 81 NPKAHIDVLKLDLSSLKSVRAFADQFNSMNLPLNILINNAGVMFCPFGLSEDGVEMQFAT 140
Query: 138 NHXXXXXXXXXXXEKMKVTAIESGIEGRVVIVASNSYKHPYREGIRFDKINDESGYNKIF 197
NH + MK TA +GIEGR+V ++S ++ H Y +GI FDK+NDE Y+
Sbjct: 141 NHLGHFLLTNLLLDNMKATAKSTGIEGRIVNLSSVAHLHTYPKGIEFDKLNDEKTYDDKM 200
Query: 198 AYGQSKXXXXXXXXXXXXXXKEQDAKVTVNSLHPGAVVTNIMRHWYFVNGMLSTLGKFFV 257
AYGQSK KE+ A +T+N +HPG ++TN+MRH +F+ +L
Sbjct: 201 AYGQSKLANILHAKELSRRLKEEGANITINCVHPGLIMTNLMRHSFFLMRVLQFATYILW 260
Query: 258 KGVEQGAATVCYVALHPQVAGVTGKYFVDCNVTELKSHALDMGLAKRLWDFSLNLI 313
K V QGAAT CYV L+PQ+ GVTG+YF DCNV + A + LAK+LW+FS LI
Sbjct: 261 KSVPQGAATTCYVGLNPQLKGVTGQYFADCNVEKTSRFARNDALAKQLWEFSEKLI 316
>Os10g0548000 Similar to Short-chain dehydrogenase Tic32
Length = 319
Score = 271 bits (694), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 139/296 (46%), Positives = 185/296 (62%)
Query: 18 TAEEVTAAVDGSGLVAVVTGASSGIGAETCRVLAMRGLHVVMGVRNSSAGARVRDEIVRQ 77
TAEEVTA VD GL AVVTGASSGIG ET RVLA+RG+ VVM VRN +AG + R+ I +
Sbjct: 19 TAEEVTAGVDARGLAAVVTGASSGIGLETTRVLALRGVRVVMAVRNVAAGHKAREAIRAE 78
Query: 78 LPAAKIEXXXXXXXXXXXVRRFAENFNALNLPLNILVNNAGIAFVPFKLSEEGIELHFST 137
+ A + VRRFA F++LNLPLNIL+NNAGI S +G+ELHF+T
Sbjct: 79 IHGAIVHVLEMDLSSMDSVRRFASEFDSLNLPLNILINNAGILSKDCIRSIDGLELHFAT 138
Query: 138 NHXXXXXXXXXXXEKMKVTAIESGIEGRVVIVASNSYKHPYREGIRFDKINDESGYNKIF 197
NH E MK T+ +G+EGR++ V+S+ + Y EGI FD + D S ++
Sbjct: 139 NHIGHFLLTNLLLENMKSTSRTTGVEGRIINVSSSGHILTYPEGICFDSVKDLSRFSTYI 198
Query: 198 AYGQSKXXXXXXXXXXXXXXKEQDAKVTVNSLHPGAVVTNIMRHWYFVNGMLSTLGKFFV 257
AYGQSK K ++ N++HPG V TN+ ++W N +++T+G+
Sbjct: 199 AYGQSKLANILHSTELARILKGDGVNISANAIHPGFVGTNLFKNWTMANAVVNTIGRIVC 258
Query: 258 KGVEQGAATVCYVALHPQVAGVTGKYFVDCNVTELKSHALDMGLAKRLWDFSLNLI 313
K VEQGAAT CYVALHPQV G++GKYF +CN+ S A + LAK+LW+FS N++
Sbjct: 259 KTVEQGAATTCYVALHPQVTGISGKYFSNCNLETPSSQASNAELAKKLWEFSSNIV 314
>Os11g0181700 Similar to Short-chain dehydrogenase Tic32
Length = 332
Score = 247 bits (631), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 129/298 (43%), Positives = 178/298 (59%), Gaps = 2/298 (0%)
Query: 18 TAEEVTAAVDGSGLVAVVTGASSGIGAETCRVLAMRGLHVVMGVRNSSAGARVRDEIVRQ 77
TAEEVTA VD + L A+VTGA++GIG ET RVLA RG V++ R +G V+ I +
Sbjct: 23 TAEEVTAGVDATHLTAIVTGATNGIGRETARVLARRGAEVIIPARTMESGNAVKQSIAEE 82
Query: 78 LPAAKIEXXXXXXXXXXXVRRFAENFNALNLPLNILVNNAGIAFVPFKLSEEGIELHFST 137
+P +++ VRRFA F++ + LNIL+NNAGI PFKLS++GIEL F+T
Sbjct: 83 VPGSRLHVMEMDLASLDSVRRFATAFDSSHTHLNILINNAGIMGCPFKLSKDGIELQFAT 142
Query: 138 NHXXXXXXXXXXXEKMKVTAIESGIEGRVVIVASNSYKHPYREGIRFDKINDESGYNKIF 197
NH +KMK TA ++G++GR+V V+S ++K +K+ND+S Y +
Sbjct: 143 NHVGHFLLTNLLLDKMKSTARKTGVQGRIVNVSSIAHKRSDGSCFDLNKLNDKSRYKPLI 202
Query: 198 AYGQSKXXXXXXXXXXXXXXKEQDAKVTVNSLHPGAVVTNIMRHWYFVNGMLSTL--GKF 255
AY SK +E+ +T NSLHPG ++TNI R+ + M+S L G
Sbjct: 203 AYAHSKLANILHANELAKRFQEEGCNLTANSLHPGVILTNITRYVVTNSVMVSILSVGNL 262
Query: 256 FVKGVEQGAATVCYVALHPQVAGVTGKYFVDCNVTELKSHALDMGLAKRLWDFSLNLI 313
F+K +QGAAT CY+ALHP++ V+GKYF DC + A D LAKRLWDFS L+
Sbjct: 263 FLKNTQQGAATTCYLALHPELKDVSGKYFADCKEATPRPAARDAELAKRLWDFSEQLV 320
>Os11g0181800 Similar to Short-chain dehydrogenase Tic32
Length = 329
Score = 239 bits (609), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 125/297 (42%), Positives = 176/297 (59%), Gaps = 2/297 (0%)
Query: 18 TAEEVTAAVDGSGLVAVVTGASSGIGAETCRVLAMRGLHVVMGVRNSSAGARVRDEIVRQ 77
TA+EVTA VD S L VVTGA++GIG ET RVLA+RG V++ R +G +V+ + +
Sbjct: 23 TADEVTAGVDASRLTVVVTGATNGIGKETARVLALRGAEVILPARTLESGMKVKQSLAEE 82
Query: 78 LPAAKIEXXXXXXXXXXXVRRFAENFNALNLPLNILVNNAGIAFVPFKLSEEGIELHFST 137
+P++K+ VR FA++FN+ LN+L+NNAG+ PF LS++GIEL F+T
Sbjct: 83 IPSSKLHVMEMDLSSLDSVRSFAKSFNSSYRHLNVLINNAGVMSCPFGLSKDGIELQFAT 142
Query: 138 NHXXXXXXXXXXXEKMKVTAIESGIEGRVVIVASNSYKHPYREGIRFDKINDESGYNKIF 197
NH +KMK TA E+G++GR++ V+S S++ DK+ND+S Y
Sbjct: 143 NHVGHFLLTNLLLDKMKATAKETGLQGRIINVSSISHRGSDGSCFDLDKLNDKSKYRPFK 202
Query: 198 AYGQSKXXXXXXXXXXXXXXKEQDAKVTVNSLHPGAVVTNIMRHWYFVNGMLSTLG--KF 255
AYG SK +E+ +T NSLHPG + TN+ RH + ++S K
Sbjct: 203 AYGHSKLANILHANELSRRFQEEGCNLTANSLHPGVIATNLPRHILTNSLIISIFSVMKP 262
Query: 256 FVKGVEQGAATVCYVALHPQVAGVTGKYFVDCNVTELKSHALDMGLAKRLWDFSLNL 312
F+K + QGAAT CY+ALHP + V+GKYF DCN + A D LAK+LW+FS L
Sbjct: 263 FLKSIPQGAATNCYLALHPGLKDVSGKYFADCNEATPTAVARDAELAKKLWEFSEEL 319
>Os03g0115700 Short-chain dehydrogenase/reductase SDR family protein
Length = 332
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 111/304 (36%), Positives = 157/304 (51%), Gaps = 14/304 (4%)
Query: 18 TAEEVTAAVDGSGLVAVVTGASSGIGAETCRVLAMRGLHVVMGVRNSSAGARVRDEIVRQ 77
TAE+V D + A++TGA+SGIGAET RVLA RG VV+ RN A +R I +
Sbjct: 22 TAEDVCP--DLGCITAIITGATSGIGAETARVLAKRGARVVIPARNVKAAEDMRARIRGE 79
Query: 78 LPAAKIEXXXXXXXXXXXVRRFAENFNALNLPLNILVNNAG-IAFVPFKLSEEGIELHFS 136
P A + VR FA+ F +L LPL++L+NNAG + LSE+G+E+ F+
Sbjct: 80 CPGADVLVLPLDLSSLASVRAFADRFLSLGLPLHLLINNAGKFSHGQLALSEDGVEMTFA 139
Query: 137 TNHXXXXXXXXXXXEKMKVTAIESGIEGRVVIVASNSYK------HPYREGIRFDKINDE 190
TN+ +M TA +G++GR+V V+S+ + Y + + KI
Sbjct: 140 TNYLGHFLLTKLLLGRMAETAAATGVQGRIVNVSSSVHSWFAGDWAEYLDLVTRRKI--- 196
Query: 191 SGYNKIFAYGQSKXXXXXXXXXXXXXXKEQDAKVTVNSLHPGAVVTNIMRHWY-FVNGML 249
Y+ AY SK KE A VTVN +HPG V T + R V ++
Sbjct: 197 -AYDATQAYAVSKLANVLHTKELAVRLKEMGANVTVNCVHPGIVRTRLNRDRDGLVTDLV 255
Query: 250 STLGKFFVKGVEQGAATVCYVALHPQVAGVTGKYFVDCNVTELKSHALDMGLAKRLWDFS 309
L +K + Q AAT CYVA HP++AGV+G+YF DCN A + A+RLW S
Sbjct: 256 FLLLSKLLKTIPQAAATTCYVAAHPRLAGVSGRYFADCNEALPSPAATNRHEAERLWQIS 315
Query: 310 LNLI 313
+++
Sbjct: 316 ESML 319
>Os10g0547950 Similar to Short-chain dehydrogenase Tic32
Length = 80
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 50/79 (63%)
Query: 36 TGASSGIGAETCRVLAMRGLHVVMGVRNSSAGARVRDEIVRQLPAAKIEXXXXXXXXXXX 95
GASSGIG ET RV+A+RG+ VVM VRN +AG R + I ++P A I
Sbjct: 2 AGASSGIGLETARVMALRGVRVVMAVRNVAAGHRASEAIRAEIPGAGIHVLEMDLSSMDS 61
Query: 96 VRRFAENFNALNLPLNILV 114
VRRFA F ALNLPLNIL+
Sbjct: 62 VRRFATEFEALNLPLNILM 80
>Os02g0116500 Similar to Protochlorophyllide reductase homologue
Length = 335
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 127/304 (41%), Gaps = 29/304 (9%)
Query: 30 GLVAVVTGASSGIGAETCRVLAMRGLHVVMGVRNSSAGARV-------RDEIVRQLPAAK 82
G+ VVTGA+SGIG E R LA+ G HVVM VR + + EI + L A
Sbjct: 15 GVSFVVTGATSGIGLEIARQLALAGGHVVMAVRRTKLAQELIQKWQNDNSEIGKPLNAEV 74
Query: 83 IEXXXXXXXXXXXVRRFAENFNALNLPLNILVNNAGIAFV--PFKLSEEGIELHFSTNHX 140
+E V +FA+ +NA PL++L+NNAGI + P + S++G E H NH
Sbjct: 75 ME---LDLLSLDSVVKFADAWNARMAPLHVLINNAGIFSIGEPQRFSKDGYEEHMQVNHL 131
Query: 141 XXXXXXXXXXEKMKVTAIESGIEGRVVIVASNSYKHPYREGIRFDKINDESGYNKIFAYG 200
+ + ++ G R+V V S + + + + + + + + Y
Sbjct: 132 APALLA-----VLLLPSLLRGSPSRIVNVNSVMHTVGFVDAEDMNLTSGKRKFTSLMGYS 186
Query: 201 QSKXXXXXXXXXXXXXXKEQDAKVTVNSLHPGAVVTNIMRHWYFVNGMLSTLGKFFVKGV 260
SK + A++ V PG V TN+ R + L +F+
Sbjct: 187 NSKLAQIKFSSMLHRRIPAE-AEINVICASPGIVHTNVARDLPKLVVAAYHLIPYFIFDA 245
Query: 261 EQGAATVCYVALHPQVAG-----------VTGKYFVDCNVTELKSHALDMGLAKRLWDFS 309
++G+ + + A PQV V DCN + ++ ++ +W+ +
Sbjct: 246 QEGSRSTLFAASDPQVPDYCEMLKSEDWPVCACISYDCNPMNASEESHNLETSQLVWEKT 305
Query: 310 LNLI 313
L +I
Sbjct: 306 LEMI 309
>Os10g0547600
Length = 259
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 40/52 (76%)
Query: 262 QGAATVCYVALHPQVAGVTGKYFVDCNVTELKSHALDMGLAKRLWDFSLNLI 313
+GAAT CYVALHPQV G++GKYF +CN+ SHA + LAK+LW+FS ++
Sbjct: 207 KGAATTCYVALHPQVKGISGKYFSNCNLDSPSSHASNAELAKKLWEFSSKVV 258
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 62/133 (46%), Gaps = 22/133 (16%)
Query: 59 MGVRNSSAGARVRDEIVRQLPAAKIEXXXXXXXXXXXVRRFAENFNALNLPLNILVNNAG 118
M VRN +AG + I ++P A + VRRFA F++LNLPLNIL+
Sbjct: 1 MAVRNVAAGRNASEAIRAEIPGAIVHVLEMDLSSMDSVRRFASEFDSLNLPLNILITLMS 60
Query: 119 IAFVPFKLSEEGIELHFSTNHXXXXXXXXXXXEKMKVTAIESGIEGRVVIVASNSYKHPY 178
F+ L E MK T+ ESG+EGR+V V+S + Y
Sbjct: 61 GHFLLTNL----------------------LMENMKSTSSESGVEGRIVNVSSWWHFAIY 98
Query: 179 REGIRFDKINDES 191
EGI FDK+ + S
Sbjct: 99 PEGICFDKVKNPS 111
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,675,262
Number of extensions: 247584
Number of successful extensions: 706
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 702
Number of HSP's successfully gapped: 14
Length of query: 314
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 213
Effective length of database: 11,762,187
Effective search space: 2505345831
Effective search space used: 2505345831
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)