Os09g0570300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Short-chain dehydrogenase Tic32.
FiT-DB / Search/ Help/ Sample detail
|
Os09g0570300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Short-chain dehydrogenase Tic32.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.77 | 0.219 | 12.1 | 0.0628 | 1.48 | -1.26 | -0.69 | 1.75 | -0.306 | 6.32 | 1.475 | 715 | -- | -- |
| 22.22 | 0.22 | 12.1 | 0.0731 | 1.68 | -1.51 | 0.647 | -- | -0.286 | 6.23 | 0.7238 | 718 | -- | -- |
| 21.88 | 0.218 | 12.1 | 0.0601 | 1.61 | -1.43 | -- | 0.95 | -0.303 | 6.29 | 1.13 | 722 | -- | -- |
| 23.18 | 0.224 | 12.1 | 0.0802 | 1.63 | -1.52 | -- | -- | -0.284 | 6.57 | 0.8937 | 772 | -- | -- |
| 34.91 | 0.275 | 12.2 | 0.0216 | -- | -0.672 | -- | 0.728 | -0.344 | -- | 3.077 | 1503 | -- | -- |
| 27.22 | 0.245 | 12.1 | 0.206 | 0.521 | -- | 0.215 | -- | -0.236 | 7.51 | -- | -- | -- | -- |
| 27.34 | 0.245 | 12.1 | 0.212 | 0.52 | -- | -- | -- | -0.236 | 7.61 | -- | -- | -- | -- |
| 35.4 | 0.277 | 12.2 | 0.039 | -- | -0.773 | -- | -- | -0.333 | -- | 2.342 | 1495 | -- | -- |
| 23.33 | 0.225 | 12.1 | -- | 1.65 | -1.54 | -- | -- | -0.293 | 6.57 | 0.8298 | 773 | -- | -- |
| 41.86 | 0.302 | 12.1 | 0.219 | -- | -- | -- | -- | -0.228 | -- | -- | -- | -- | -- |
| 28.52 | 0.25 | 12.1 | -- | 0.522 | -- | -- | -- | -0.259 | 7.58 | -- | -- | -- | -- |
| 34.63 | 0.274 | 12.1 | -- | -- | 0.473 | -- | -- | -0.21 | -- | 8.64 | 848 | -- | -- |
| 43.12 | 0.307 | 12.1 | -- | -- | -- | -- | -- | -0.252 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.07 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 10 |
| 3 | 20.13 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 10 |
| 15 | 20.45 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 12 |
| 16 | 20.47 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 15 |
| 29 | 20.57 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 13 |
| 50 | 20.70 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 53 | 20.70 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 16 |
| 55 | 20.71 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 18 |
| 57 | 20.72 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 75 | 20.79 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 18 |
| 81 | 20.81 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 86 | 20.82 | radiation | 1 | 720 | < th | dose dependent | sin | 22 | NA |
| 105 | 20.89 | radiation | 1 | 720 | < th | dose independent | sin | 22 | NA |
| 107 | 20.89 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 22 |
| 108 | 20.90 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 142 | 21.00 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 162 | 21.04 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 180 | 21.08 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 190 | 21.11 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 198 | 21.13 | humidity | 70 | 720 | > th | dose dependent | rect. | 10 | 14 |
| 215 | 21.18 | radiation | 1 | 720 | > th | dose independent | sin | 22 | NA |
| 224 | 21.20 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 254 | 21.24 | humidity | 70 | 720 | > th | dose dependent | sin | 18 | NA |
| 347 | 21.41 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 383 | 21.49 | radiation | 1 | 720 | < th | dose independent | rect. | 21 | 22 |
| 385 | 21.49 | humidity | 60 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 435 | 21.56 | humidity | 70 | 1440 | > th | dose dependent | rect. | 3 | 13 |
| 492 | 21.64 | humidity | 60 | 720 | > th | dose dependent | rect. | 14 | 14 |
| 535 | 21.69 | humidity | 80 | 720 | > th | dose independent | rect. | 10 | 11 |
| 621 | 21.75 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 640 | 21.77 | humidity | 80 | 720 | > th | dose independent | sin | 19 | NA |
| 656 | 21.79 | humidity | 80 | 720 | > th | dose independent | rect. | 10 | 16 |
| 672 | 21.80 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 720 | 21.84 | humidity | 70 | 1440 | > th | dose dependent | sin | 2 | NA |
| 735 | 21.85 | radiation | 1 | 720 | > th | dose independent | rect. | 6 | 13 |
| 768 | 21.86 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 824 | 21.87 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 864 | 21.90 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 23 |
| 913 | 21.93 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 23 |