FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0115700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Short-chain dehydrogenase/reductase SDR family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.25 (0.0575) R2 : 0.542
β1 : -2.15 (0.209) R2dD : 0.114 R2D : 0.0889
β2 : 2.41 (0.158) R2dC : 0.255 R2C : 0.0145
β3 : -2.07 (0.125) R2dE : 0.339 R2E : 0.163
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.722 (0.125) R2dN8 : 0.0499 R2N8 : 0.0557
σ : 1.06
deviance : 522.72
__
_____
C
peak time of C : 7.42
E
wheather : temperature
threshold : 21.11
memory length : 589
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.9
open length of G : 1.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
524.42 1.08 5.26 -1.83 2.41 -2.01 1.36 1.94 -0.734 7.37 20.6 630 5.03 1.99
523.14 1.07 5.35 -2.03 2.34 -2.02 2.07 -- -0.856 7.32 21.13 611 5.51 1.65
527.12 1.07 5.24 -1.76 2.43 -2.04 -- 2.42 -0.733 7.36 20.52 616 5.17 1.9
522.72 1.06 5.25 -2.15 2.41 -2.07 -- -- -0.722 7.42 21.11 589 5.9 1.1
686.12 1.22 5.29 -2.03 -- -1.83 -- 0.942 -0.822 -- 20.32 1020 5.67 2.29
702.89 1.24 5.42 -2.42 2.01 -- 1.46 -- -1.24 4.57 -- -- -- --
708.45 1.25 5.42 -2.43 2.01 -- -- -- -1.25 4.47 -- -- -- --
614.16 1.15 5.38 -2.14 -- -2.06 -- -- -1.01 -- 21.2 903 5.62 6.23
648.06 1.19 5.22 -- 2.34 -2.18 -- -- -0.503 7.57 21.13 592 5.9 1.13
925.5 1.42 5.44 -2.35 -- -- -- -- -1.2 -- -- -- -- --
864.34 1.38 5.36 -- 1.97 -- -- -- -0.979 4.5 -- -- -- --
695.56 1.23 5.34 -- -- -2.39 -- -- -0.779 -- 21.5 916 5.45 7.08
1071.6 1.53 5.38 -- -- -- -- -- -0.936 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 556.17 temperature 20 720 > th dose independent rect. 5 2
3 564.32 temperature 20 720 > th dose independent rect. 1 6
19 576.33 temperature 20 720 > th dose independent sin 7 NA
28 579.04 temperature 20 720 > th dose independent rect. 1 15
30 579.41 temperature 15 720 > th dose dependent rect. 4 3
57 583.14 temperature 15 720 > th dose dependent rect. 1 6
78 586.46 temperature 20 270 > th dose independent rect. 4 11
93 588.56 temperature 15 270 > th dose dependent rect. 4 10
121 592.78 temperature 25 90 < th dose independent rect. 3 10
138 595.09 temperature 15 10 > th dose dependent rect. 6 10
159 597.70 temperature 20 720 < th dose independent rect. 2 9
160 597.73 temperature 20 720 < th dose independent rect. 1 11
173 598.61 radiation 20 4320 > th dose dependent rect. 16 16
198 599.88 radiation 30 4320 < th dose independent rect. 7 1
205 600.39 temperature 25 10 > th dose independent rect. 6 10
222 600.97 temperature 20 720 < th dose independent sin 5 NA
227 601.19 wind 9 43200 < th dose independent rect. 20 18
234 601.58 wind 9 43200 < th dose independent rect. 17 21
238 601.84 wind 9 43200 > th dose independent rect. 20 18
243 602.03 temperature 30 270 < th dose dependent rect. 1 11
256 602.49 radiation 30 4320 < th dose independent rect. 22 10
263 602.59 radiation 30 4320 < th dose independent rect. 24 8
271 602.93 wind 9 43200 > th dose independent rect. 17 21
273 602.94 radiation 30 4320 < th dose independent rect. 20 12
275 602.96 wind 7 43200 > th dose dependent rect. 19 21
277 602.99 wind 9 43200 < th dose independent rect. 19 23
278 602.99 radiation 20 4320 > th dose dependent rect. 7 1
298 603.52 wind 7 43200 > th dose dependent rect. 15 23
316 603.59 radiation 30 4320 < th dose independent rect. 2 6
319 603.84 wind 7 43200 > th dose dependent rect. 17 21
320 603.85 wind 9 43200 < th dose independent rect. 8 6
324 604.02 radiation 30 4320 > th dose independent rect. 7 1
340 604.08 wind 9 43200 > th dose dependent rect. 10 21
350 604.23 wind 9 43200 > th dose independent rect. 17 23
352 604.25 wind 7 43200 > th dose dependent rect. 9 5
357 604.37 wind 9 43200 < th dose independent rect. 12 23
360 604.43 wind 9 43200 > th dose dependent rect. 10 8
370 604.61 wind 9 43200 < th dose independent rect. 3 21
380 604.72 wind 9 43200 < th dose independent rect. 1 23
382 604.73 atmosphere 995 43200 > th dose independent rect. 19 20
387 604.79 temperature 30 90 < th dose dependent rect. 3 10
403 605.04 wind 9 43200 < th dose independent rect. 5 9
406 605.06 wind 9 43200 > th dose dependent rect. 10 14
407 605.06 wind 9 43200 > th dose dependent rect. 10 16
408 605.08 wind 9 43200 < th dose independent no NA NA
411 605.09 wind 9 43200 < th dose independent rect. 23 23
428 605.22 wind 9 43200 < th dose independent rect. 8 23
440 605.34 temperature 25 90 > th dose independent rect. 1 14
441 605.34 wind 9 43200 > th dose dependent rect. 10 12
446 605.40 wind 7 43200 > th dose dependent rect. 1 15
449 605.45 wind 9 43200 < th dose independent rect. 6 23
451 605.47 atmosphere 995 43200 < th dose dependent rect. 12 15
463 605.59 wind 9 43200 < th dose independent rect. 10 23
469 605.65 wind 9 43200 > th dose independent rect. 12 23
508 606.12 atmosphere 995 43200 < th dose dependent sin 16 NA
510 606.13 wind 9 43200 > th dose independent rect. 1 23
512 606.14 wind 7 43200 > th dose dependent sin 2 NA
513 606.15 wind 9 43200 > th dose independent no NA NA
514 606.15 wind 9 43200 > th dose independent rect. 3 23
526 606.22 wind 9 43200 < th dose independent sin 2 NA
530 606.23 wind 7 43200 > th dose dependent no NA NA
541 606.30 wind 9 43200 > th dose independent rect. 6 23
543 606.31 wind 7 43200 > th dose dependent rect. 1 23
545 606.33 wind 9 43200 > th dose independent rect. 23 23
546 606.34 wind 9 43200 < th dose independent rect. 1 13
553 606.38 wind 9 43200 < th dose independent rect. 1 15
560 606.43 wind 7 43200 > th dose dependent rect. 23 23
564 606.44 wind 7 43200 > th dose dependent rect. 7 23
588 606.55 atmosphere 995 43200 < th dose independent rect. 21 19
591 606.55 wind 9 43200 > th dose dependent sin 19 NA
595 606.56 wind 7 43200 > th dose dependent rect. 12 23
611 606.63 wind 9 43200 < th dose independent rect. 1 17
614 606.64 wind 9 43200 < th dose independent rect. 23 19
620 606.67 wind 9 43200 < th dose independent rect. 23 17
632 606.72 wind 9 43200 > th dose independent rect. 10 23
639 606.74 temperature 25 270 < th dose dependent rect. 5 7
715 607.24 wind 9 43200 > th dose independent rect. 8 6
787 607.75 wind 7 43200 > th dose independent sin 3 NA
797 607.82 wind 3 43200 > th dose dependent rect. 18 13
811 607.94 atmosphere 1010 30 < th dose independent rect. 6 10
819 607.99 wind 9 43200 > th dose independent rect. 1 17
835 608.08 temperature 20 720 < th dose independent rect. 3 1
929 608.76 atmosphere 995 43200 > th dose independent sin 5 NA
946 608.90 wind 3 43200 > th dose dependent sin 11 NA