BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0115700 Os03g0115700|AK067473
(332 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0115700 Short-chain dehydrogenase/reductase SDR family... 512 e-145
Os01g0151700 Similar to Short-chain dehydrogenase Tic32 219 1e-57
Os11g0181700 Similar to Short-chain dehydrogenase Tic32 189 2e-48
Os11g0181800 Similar to Short-chain dehydrogenase Tic32 186 2e-47
Os10g0548000 Similar to Short-chain dehydrogenase Tic32 181 1e-45
Os09g0570300 Similar to Short-chain dehydrogenase Tic32 172 4e-43
Os04g0291100 Similar to Short-chain dehydrogenase Tic32 153 1e-37
Os04g0291000 Glucose/ribitol dehydrogenase family protein 93 3e-19
Os06g0129100 Similar to Short-chain dehydrogenase Tic32 74 1e-13
>Os03g0115700 Short-chain dehydrogenase/reductase SDR family protein
Length = 332
Score = 512 bits (1318), Expect = e-145, Method: Compositional matrix adjust.
Identities = 270/332 (81%), Positives = 270/332 (81%)
Query: 1 MLRAAKYLLGSPGANGFGSKSTAEDVCPDLXXXXXXXXXXXXXXXXXXXRVLAKRGARVV 60
MLRAAKYLLGSPGANGFGSKSTAEDVCPDL RVLAKRGARVV
Sbjct: 1 MLRAAKYLLGSPGANGFGSKSTAEDVCPDLGCITAIITGATSGIGAETARVLAKRGARVV 60
Query: 61 IPARNVKAAEDMRARIRGECPGXXXXXXXXXXXXXXXXRAFADRFLSLGLPLHLLINNAG 120
IPARNVKAAEDMRARIRGECPG RAFADRFLSLGLPLHLLINNAG
Sbjct: 61 IPARNVKAAEDMRARIRGECPGADVLVLPLDLSSLASVRAFADRFLSLGLPLHLLINNAG 120
Query: 121 KFSHGQLALSEDGVEMTFATNYXXXXXXXXXXXGRMAETAAATGVQGRIVNVSSSVHSWF 180
KFSHGQLALSEDGVEMTFATNY GRMAETAAATGVQGRIVNVSSSVHSWF
Sbjct: 121 KFSHGQLALSEDGVEMTFATNYLGHFLLTKLLLGRMAETAAATGVQGRIVNVSSSVHSWF 180
Query: 181 AGDWAEYLDLVTRRKIAYDATQAYAVSKLANVLHTKELAVRLKEMGANVTVNCVHPGIVR 240
AGDWAEYLDLVTRRKIAYDATQAYAVSKLANVLHTKELAVRLKEMGANVTVNCVHPGIVR
Sbjct: 181 AGDWAEYLDLVTRRKIAYDATQAYAVSKLANVLHTKELAVRLKEMGANVTVNCVHPGIVR 240
Query: 241 TRLNRDRDGXXXXXXXXXXXXXXXXIPQAAATTCYVAAHPRLAGVSGRYFADCNEALPSP 300
TRLNRDRDG IPQAAATTCYVAAHPRLAGVSGRYFADCNEALPSP
Sbjct: 241 TRLNRDRDGLVTDLVFLLLSKLLKTIPQAAATTCYVAAHPRLAGVSGRYFADCNEALPSP 300
Query: 301 AATNRHEAERLWQISESMLLCTNRHSKDASAP 332
AATNRHEAERLWQISESMLLCTNRHSKDASAP
Sbjct: 301 AATNRHEAERLWQISESMLLCTNRHSKDASAP 332
>Os01g0151700 Similar to Short-chain dehydrogenase Tic32
Length = 321
Score = 219 bits (559), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/319 (41%), Positives = 168/319 (52%), Gaps = 6/319 (1%)
Query: 8 LLGSPGANGFGSKSTAEDVCP--DLXXXXXXXXXXXXXXXXXXXRVLAKRGARVVIPARN 65
+ G GA+GFGS STAE V D RV A RGA V+I ARN
Sbjct: 7 ITGKAGASGFGSGSTAEQVTAGVDATGLTVIVTGGASGIGLETSRVFAMRGAHVIIAARN 66
Query: 66 VKAAEDMRARIRGECPGXXXXXXXXXXXXXXXXRAFADRFLSLGLPLHLLINNAGKFSHG 125
+AA +R +I E P RAFAD+F S+ LPL++LINNAG
Sbjct: 67 TEAASVVRKKIIEENPKAHIDVLKLDLSSLKSVRAFADQFNSMNLPLNILINNAGVM-FC 125
Query: 126 QLALSEDGVEMTFATNYXXXXXXXXXXXGRMAETAAATGVQGRIVNVSSSVHSWFAGDWA 185
LSEDGVEM FATN+ M TA +TG++GRIVN+SS H
Sbjct: 126 PFGLSEDGVEMQFATNHLGHFLLTNLLLDNMKATAKSTGIEGRIVNLSSVAHLHTYPKGI 185
Query: 186 EYLDLVTRRKIAYDATQAYAVSKLANVLHTKELAVRLKEMGANVTVNCVHPGIVRTRLNR 245
E+ L + YD AY SKLAN+LH KEL+ RLKE GAN+T+NCVHPG++ T L R
Sbjct: 186 EFDKLNDEK--TYDDKMAYGQSKLANILHAKELSRRLKEEGANITINCVHPGLIMTNLMR 243
Query: 246 DRDGXXXXXXXXXXXXXXXXIPQAAATTCYVAAHPRLAGVSGRYFADCNEALPSPAATNR 305
+PQ AATTCYV +P+L GV+G+YFADCN S A N
Sbjct: 244 -HSFFLMRVLQFATYILWKSVPQGAATTCYVGLNPQLKGVTGQYFADCNVEKTSRFARND 302
Query: 306 HEAERLWQISESMLLCTNR 324
A++LW+ SE ++ +++
Sbjct: 303 ALAKQLWEFSEKLIKSSSK 321
>Os11g0181700 Similar to Short-chain dehydrogenase Tic32
Length = 332
Score = 189 bits (481), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 124/315 (39%), Positives = 155/315 (49%), Gaps = 7/315 (2%)
Query: 13 GANGFGSKSTAEDVCP--DLXXXXXXXXXXXXXXXXXXXRVLAKRGARVVIPARNVKAAE 70
G +G G STAE+V D RVLA+RGA V+IPAR +++
Sbjct: 14 GPSGLGPTSTAEEVTAGVDATHLTAIVTGATNGIGRETARVLARRGAEVIIPARTMESGN 73
Query: 71 DMRARIRGECPGXXXXXXXXXXXXXXXXRAFADRFLSLGLPLHLLINNAGKFSHGQLALS 130
++ I E PG R FA F S L++LINNAG LS
Sbjct: 74 AVKQSIAEEVPGSRLHVMEMDLASLDSVRRFATAFDSSHTHLNILINNAGIMG-CPFKLS 132
Query: 131 EDGVEMTFATNYXXXXXXXXXXXGRMAETAAATGVQGRIVNVSSSVHSWFAGDWAEYLDL 190
+DG+E+ FATN+ +M TA TGVQGRIVNVSS H G + L
Sbjct: 133 KDGIELQFATNHVGHFLLTNLLLDKMKSTARKTGVQGRIVNVSSIAHKRSDGSCFDLNKL 192
Query: 191 VTRRKIAYDATQAYAVSKLANVLHTKELAVRLKEMGANVTVNCVHPGIVRTRLNRDR-DG 249
+ + Y AYA SKLAN+LH ELA R +E G N+T N +HPG++ T + R
Sbjct: 193 NDKSR--YKPLIAYAHSKLANILHANELAKRFQEEGCNLTANSLHPGVILTNITRYVVTN 250
Query: 250 XXXXXXXXXXXXXXXXIPQAAATTCYVAAHPRLAGVSGRYFADCNEALPSPAATNRHEAE 309
Q AATTCY+A HP L VSG+YFADC EA P PAA + A+
Sbjct: 251 SVMVSILSVGNLFLKNTQQGAATTCYLALHPELKDVSGKYFADCKEATPRPAARDAELAK 310
Query: 310 RLWQISESMLLCTNR 324
RLW SE L+ TNR
Sbjct: 311 RLWDFSEQ-LVDTNR 324
>Os11g0181800 Similar to Short-chain dehydrogenase Tic32
Length = 329
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 115/309 (37%), Positives = 154/309 (49%), Gaps = 6/309 (1%)
Query: 13 GANGFGSKSTAEDVCP--DLXXXXXXXXXXXXXXXXXXXRVLAKRGARVVIPARNVKAAE 70
G +GFG STA++V D RVLA RGA V++PAR +++
Sbjct: 14 GPSGFGGASTADEVTAGVDASRLTVVVTGATNGIGKETARVLALRGAEVILPARTLESGM 73
Query: 71 DMRARIRGECPGXXXXXXXXXXXXXXXXRAFADRFLSLGLPLHLLINNAGKFSHGQLALS 130
++ + E P R+FA F S L++LINNAG S LS
Sbjct: 74 KVKQSLAEEIPSSKLHVMEMDLSSLDSVRSFAKSFNSSYRHLNVLINNAGVMS-CPFGLS 132
Query: 131 EDGVEMTFATNYXXXXXXXXXXXGRMAETAAATGVQGRIVNVSSSVHSWFAGDWAEYLDL 190
+DG+E+ FATN+ +M TA TG+QGRI+NVSS H G + L
Sbjct: 133 KDGIELQFATNHVGHFLLTNLLLDKMKATAKETGLQGRIINVSSISHRGSDGSCFDLDKL 192
Query: 191 VTRRKIAYDATQAYAVSKLANVLHTKELAVRLKEMGANVTVNCVHPGIVRTRLNRD-RDG 249
+ K Y +AY SKLAN+LH EL+ R +E G N+T N +HPG++ T L R
Sbjct: 193 NDKSK--YRPFKAYGHSKLANILHANELSRRFQEEGCNLTANSLHPGVIATNLPRHILTN 250
Query: 250 XXXXXXXXXXXXXXXXIPQAAATTCYVAAHPRLAGVSGRYFADCNEALPSPAATNRHEAE 309
IPQ AAT CY+A HP L VSG+YFADCNEA P+ A + A+
Sbjct: 251 SLIISIFSVMKPFLKSIPQGAATNCYLALHPGLKDVSGKYFADCNEATPTAVARDAELAK 310
Query: 310 RLWQISESM 318
+LW+ SE +
Sbjct: 311 KLWEFSEEL 319
>Os10g0548000 Similar to Short-chain dehydrogenase Tic32
Length = 319
Score = 181 bits (458), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 116/311 (37%), Positives = 156/311 (50%), Gaps = 10/311 (3%)
Query: 13 GANGFGSKSTAEDVCP--DLXXXXXXXXXXXXXXXXXXXRVLAKRGARVVIPARNVKAAE 70
G +GF STAE+V D RVLA RG RVV+ RNV A
Sbjct: 10 GPSGFSGASTAEEVTAGVDARGLAAVVTGASSGIGLETTRVLALRGVRVVMAVRNVAAGH 69
Query: 71 DMRARIRGECPGXXXXXXXXXXXXXXXXRAFADRFLSLGLPLHLLINNAGKFSHGQLALS 130
R IR E G R FA F SL LPL++LINNAG S + S
Sbjct: 70 KAREAIRAEIHGAIVHVLEMDLSSMDSVRRFASEFDSLNLPLNILINNAGILSKDCIR-S 128
Query: 131 EDGVEMTFATNYXXXXXXXXXXXGRMAETAAATGVQGRIVNVSSSVH--SWFAGDWAEYL 188
DG+E+ FATN+ M T+ TGV+GRI+NVSSS H ++ G + +
Sbjct: 129 IDGLELHFATNHIGHFLLTNLLLENMKSTSRTTGVEGRIINVSSSGHILTYPEGICFDSV 188
Query: 189 DLVTRRKIAYDATQAYAVSKLANVLHTKELAVRLKEMGANVTVNCVHPGIVRTRLNRDRD 248
++R + AY SKLAN+LH+ ELA LK G N++ N +HPG V T L ++
Sbjct: 189 KDLSR----FSTYIAYGQSKLANILHSTELARILKGDGVNISANAIHPGFVGTNLFKNWT 244
Query: 249 GXXXXXXXXXXXXXXXXIPQAAATTCYVAAHPRLAGVSGRYFADCNEALPSPAATNRHEA 308
+ Q AATTCYVA HP++ G+SG+YF++CN PS A+N A
Sbjct: 245 -MANAVVNTIGRIVCKTVEQGAATTCYVALHPQVTGISGKYFSNCNLETPSSQASNAELA 303
Query: 309 ERLWQISESML 319
++LW+ S +++
Sbjct: 304 KKLWEFSSNIV 314
>Os09g0570300 Similar to Short-chain dehydrogenase Tic32
Length = 316
Score = 172 bits (436), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 111/317 (35%), Positives = 154/317 (48%), Gaps = 6/317 (1%)
Query: 5 AKYLLGSPGANGFGSKSTAEDVCPDLXXX--XXXXXXXXXXXXXXXXRVLAKRGARVVIP 62
+ +L G +GF STA+ V L RVLA RGA VV+
Sbjct: 3 SSWLFRRSGPSGFSWASTADQVTAGLSAAGLTAIVTGASSGIGAETARVLAIRGAHVVMA 62
Query: 63 ARNVKAAEDMRARIRGECPGXXXXXXXXXXXXXXXXRAFADRFLSLGLPLHLLINNAGKF 122
RN+ AA+ +R I + P RAFA F + GLPL++LINNAG
Sbjct: 63 VRNLAAAQPVRDAILADAPAASLDLMELDLASMDSVRAFASDFAAKGLPLNILINNAGVM 122
Query: 123 SHGQLALSEDGVEMTFATNYXXXXXXXXXXXGRMAETAAATGVQGRIVNVSSSVHSWFAG 182
+ +LS+DG+E+ FATN+ M +T+ + V+GRIVNVSS H +
Sbjct: 123 A-TPFSLSKDGIELQFATNHVGHFLLTHLLLETMKKTSRESNVEGRIVNVSSEGHRFAYR 181
Query: 183 DWAEYLDLVTRRKIAYDATQAYAVSKLANVLHTKELAVRLKEMGANVTVNCVHPGIVRTR 242
+ + + + Y++ AY SKLAN+LH ELA R K+ G N+T N +HPG + T
Sbjct: 182 EGIRFAKINDESE--YNSIGAYGQSKLANILHANELARRFKDEGVNITANSLHPGSIITN 239
Query: 243 LNRDRDGXXXXXXXXXXXXXXXXIPQAAATTCYVAAHPRLAGVSGRYFADCNEALPSPAA 302
L R Q AATTCYVA HP++ GVSG+YF+D N S
Sbjct: 240 LLRHHS-ILDVLHRTLGKLVLKNAQQGAATTCYVALHPQVKGVSGKYFSDSNVNEASEKG 298
Query: 303 TNRHEAERLWQISESML 319
+ A+RLW+ S ++
Sbjct: 299 NDMELAKRLWEYSIELI 315
>Os04g0291100 Similar to Short-chain dehydrogenase Tic32
Length = 314
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 105/311 (33%), Positives = 147/311 (47%), Gaps = 14/311 (4%)
Query: 15 NGFGSKSTAEDVCP--DLXXXXXXXXXXXXXXXXXXXRVLAKRGARVVIPARNVKAAEDM 72
+GF STAE+V D RVLA RG VV+ RN A +
Sbjct: 11 SGFSPSSTAEEVTAAVDGSGLVAVVTGASSGIGAETCRVLAMRGLHVVMGVRNSSAGARV 70
Query: 73 RARIRGECPGXXXXXXXXXXXXXXXXRAFADRFLSLGLPLHLLINNAGKFSHGQLALSED 132
R I + P R FA+ F +L LPL++L+NNAG + LSE+
Sbjct: 71 RDEIVRQLPAAKIEMLDLDLSLMSSVRRFAENFNALNLPLNILVNNAG-IAFVPFKLSEE 129
Query: 133 GVEMTFATNYXXXXXXXXXXXGRMAETAAATGVQGRIVNVSSSVHSWFAGDWAEYLDLVT 192
G+E+ F+TN+ +M TA +G++GR+V V+S+ + Y + +
Sbjct: 130 GIELHFSTNHLGHFLLTDLLLEKMKVTAIESGIEGRVVIVASNSYK------HPYREGIR 183
Query: 193 RRKI----AYDATQAYAVSKLANVLHTKELAVRLKEMGANVTVNCVHPGIVRTRLNRDRD 248
KI Y+ AY SKLAN+LH+ L+ LKE A VTVN +HPG V T + R
Sbjct: 184 FDKINDESGYNKIFAYGQSKLANILHSNLLSSNLKEQDAKVTVNSLHPGAVVTNIMRHWY 243
Query: 249 GXXXXXXXXXXXXXXXXIPQAAATTCYVAAHPRLAGVSGRYFADCNEALPSPAATNRHEA 308
+ Q AAT CYVA HP++AGV+G+YF DCN A + A
Sbjct: 244 -FVNGMLSTLGKFFVKGVEQGAATVCYVALHPQVAGVTGKYFVDCNVTELKSHALDMGLA 302
Query: 309 ERLWQISESML 319
+RLW S +++
Sbjct: 303 KRLWDFSLNLI 313
>Os04g0291000 Glucose/ribitol dehydrogenase family protein
Length = 280
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 110/274 (40%), Gaps = 46/274 (16%)
Query: 50 RVLAKRGARVVIPARNVKAAEDMRARIRGECPGXXXXXXXXXXXXXXXXRAFADRFLSLG 109
RVL RG VV+ RN+ A +R I + P
Sbjct: 48 RVLVMRGVYVVMGVRNLSAGARVRDEILKQVPSA-------------------------- 81
Query: 110 LPLHLLINNAGKFSHGQLALSEDGVEMTFATNYXXXXXXXXXXXGRMAETAAATGVQGRI 169
+ +L + S G + MT + M TA +G +GR+
Sbjct: 82 -KMEILNLDLSSMSSGFVLCPSSFQRMTLSCILQRITS--------MKVTAIESGKEGRV 132
Query: 170 VNVSSSVHSWFAGDWAEYLDLVTRRKI----AYDATQAYAVSKLANVLHTKELAVRLKEM 225
V V+S +S Y + KI Y+ AY SKLAN+LH+ L+ LKE
Sbjct: 133 VIVASVSYS------LSYPGGICFDKINDESGYNRFLAYGQSKLANILHSNLLSSHLKEQ 186
Query: 226 GANVTVNCVHPGIVRTRLNRDRDGXXXXXXXXXXXXXXXXIPQAAATTCYVAAHPRLAGV 285
A V VN +HPG V T + + Q AAT CYVA HP++AGV
Sbjct: 187 DAKVIVNSLHPGAVATNILHHW-CPLYGAIRAIGKYFVKGVEQGAATVCYVALHPQVAGV 245
Query: 286 SGRYFADCNEALPSPAATNRHEAERLWQISESML 319
+G+YF+DCN A + A+RLW S S +
Sbjct: 246 TGKYFSDCNITELKSHALDMDLAKRLWDFSLSQI 279
>Os06g0129100 Similar to Short-chain dehydrogenase Tic32
Length = 91
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 40/51 (78%)
Query: 268 QAAATTCYVAAHPRLAGVSGRYFADCNEALPSPAATNRHEAERLWQISESM 318
QAAATTCYVA HP +AGVSG+YFADCNEA PS +N EA +LW+ S+ +
Sbjct: 11 QAAATTCYVAVHPAVAGVSGKYFADCNEASPSRLGSNADEAAKLWRFSDEV 61
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.132 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,538,429
Number of extensions: 259442
Number of successful extensions: 575
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 545
Number of HSP's successfully gapped: 9
Length of query: 332
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 231
Effective length of database: 11,762,187
Effective search space: 2717065197
Effective search space used: 2717065197
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)