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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0346600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glucose/ribitol dehydrogenase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.68 (0.0302) R2 : 0.752
β1 : -1.27 (0.111) R2dD : 0.0718 R2D : 0.0524
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.73 (0.078) R2dE : 0.678 R2E : 0.673
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.361 (0.0645) R2dN8 : 0.0211 R2N8 : 0.00281
σ : 0.565
deviance : 147.14
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 105.2
memory length : 650
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 5.73

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
146.22 0.568 8.67 -1.22 1.07 -1.92 0.382 0.577 -0.333 14.1 94 611 18.8 4.42
146.25 0.563 8.67 -1.26 1.08 -1.92 0.0546 -- -0.329 14 94.9 609 18.8 4.52
146.23 0.563 8.67 -1.23 1.06 -1.91 -- 0.287 -0.318 13.9 94.97 611 18.8 4.53
146.19 0.563 8.67 -1.23 1.05 -1.95 -- -- -0.337 14 95 610 18.8 4.54
149.52 0.57 8.7 -1.31 -- -2.79 -- -0.126 -0.421 -- 104.4 644 18 6.4
211.87 0.682 8.65 -1.14 2.38 -- -0.163 -- -0.289 14.2 -- -- -- --
211.97 0.682 8.65 -1.14 2.38 -- -- -- -0.29 14.2 -- -- -- --
147.14 0.565 8.68 -1.27 -- -2.73 -- -- -0.361 -- 105.2 650 18 5.73
187.05 0.637 8.64 -- 0.804 -2.08 -- -- -0.211 13.8 98 612 18.8 4.55
549.53 1.1 8.67 -1.24 -- -- -- -- -0.347 -- -- -- -- --
246.33 0.734 8.62 -- 2.4 -- -- -- -0.163 14.2 -- -- -- --
187.35 0.637 8.65 -- -- -2.76 -- -- -0.217 -- 107.4 662 17.8 5.73
590.17 1.13 8.64 -- -- -- -- -- -0.209 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 155.20 humidity 90.0 720 < th dose dependent rect. 17 7
4 155.72 humidity 60.0 720 > th dose dependent rect. 18 7
6 156.56 humidity 70.0 720 > th dose dependent rect. 19 4
91 162.98 humidity 50.0 720 > th dose dependent rect. 16 16
101 163.76 humidity 80.0 720 < th dose independent rect. 17 4
118 164.28 humidity 50.0 720 > th dose dependent sin 14 NA
148 165.07 wind 3.0 90 < th dose dependent rect. 2 3
156 165.36 humidity 70.0 1440 > th dose independent rect. 18 21
162 165.55 humidity 70.0 1440 < th dose independent rect. 18 22
185 166.29 humidity 70.0 1440 < th dose independent rect. 9 11
216 166.46 temperature 25.0 720 > th dose dependent rect. 18 7
219 166.49 humidity 70.0 720 > th dose independent rect. 15 17
222 166.51 humidity 90.0 720 < th dose dependent sin 14 NA
223 166.53 humidity 70.0 1440 > th dose independent rect. 9 16
224 166.53 humidity 70.0 1440 > th dose independent rect. 9 18
228 166.56 humidity 70.0 1440 > th dose independent rect. 9 11
232 166.58 humidity 90.0 720 > th dose independent rect. 21 2
242 166.75 temperature 25.0 720 > th dose dependent rect. 19 5
251 166.83 radiation 40.0 1440 < th dose dependent rect. 18 9
252 166.85 wind 3.0 90 < th dose independent rect. 2 3
286 167.18 humidity 50.0 1440 > th dose dependent rect. 9 15
287 167.19 humidity 80.0 720 < th dose independent rect. 18 1
294 167.27 humidity 70.0 720 > th dose independent sin 12 NA
298 167.28 humidity 70.0 1440 > th dose independent rect. 9 6
324 167.49 humidity 70.0 1440 < th dose independent rect. 9 7
390 167.81 humidity 90.0 1440 < th dose dependent rect. 9 15
424 167.99 humidity 70.0 1440 < th dose independent sin 21 NA
436 168.06 humidity 90.0 1440 < th dose dependent rect. 3 21
477 168.20 temperature 30.0 720 > th dose dependent rect. 18 1
521 168.26 humidity 70.0 1440 < th dose independent no NA NA
582 168.29 humidity 70.0 1440 > th dose independent sin 22 NA
589 168.30 humidity 90.0 1440 < th dose dependent rect. 9 21
595 168.34 humidity 50.0 1440 > th dose dependent sin 19 NA
638 168.42 humidity 70.0 1440 > th dose independent rect. 22 22
639 168.42 humidity 70.0 1440 > th dose independent rect. 2 23
643 168.43 humidity 70.0 1440 > th dose independent no NA NA
653 168.44 humidity 70.0 1440 > th dose independent rect. 2 18
715 168.55 humidity 90.0 1440 < th dose dependent rect. 18 23
754 168.69 humidity 90.0 1440 < th dose dependent sin 19 NA
764 168.72 radiation 30.0 1440 > th dose dependent rect. 13 4
813 168.83 radiation 40.0 1440 > th dose independent rect. 13 2
822 168.86 radiation 40.0 1440 > th dose independent rect. 13 20
831 168.87 humidity 90.0 1440 < th dose dependent no NA NA
851 168.96 humidity 70.0 1440 < th dose independent rect. 13 23
853 168.98 precipitation 0.1 90 < th dose independent rect. 3 2
856 168.98 precipitation 0.1 90 < th dose dependent rect. 3 2
880 169.03 temperature 15.0 90 > th dose dependent rect. 3 2
889 169.05 humidity 90.0 1440 < th dose dependent rect. 16 23
929 169.15 wind 3.0 10 < th dose dependent rect. 2 4