BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0346600 Os09g0346600|AK108901
(369 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0346600 Glucose/ribitol dehydrogenase family protein 599 e-171
Os01g0151700 Similar to Short-chain dehydrogenase Tic32 99 5e-21
Os11g0181700 Similar to Short-chain dehydrogenase Tic32 86 4e-17
Os09g0570300 Similar to Short-chain dehydrogenase Tic32 83 4e-16
Os11g0181800 Similar to Short-chain dehydrogenase Tic32 80 2e-15
Os02g0116500 Similar to Protochlorophyllide reductase homol... 79 4e-15
Os04g0291100 Similar to Short-chain dehydrogenase Tic32 73 3e-13
Os10g0548000 Similar to Short-chain dehydrogenase Tic32 73 4e-13
>Os09g0346600 Glucose/ribitol dehydrogenase family protein
Length = 369
Score = 599 bits (1544), Expect = e-171, Method: Compositional matrix adjust.
Identities = 300/369 (81%), Positives = 300/369 (81%)
Query: 1 MDREALRMVCSREFWRMAVLWTVXXXXXXXXXXXXXXGAPVPRLRPMPEPXXXXXXXXXX 60
MDREALRMVCSREFWRMAVLWTV GAPVPRLRPMPEP
Sbjct: 1 MDREALRMVCSREFWRMAVLWTVSLLYSYILLFFLRRGAPVPRLRPMPEPDDDAARRRRR 60
Query: 61 XPVCVIXXXXXXXXXXXXXXXXREGYHVILAGRSSQLLSETVQQIRDQQPDAHLEAFQID 120
PVCVI REGYHVILAGRSSQLLSETVQQIRDQQPDAHLEAFQID
Sbjct: 61 RPVCVITGATSGLGKAAAAALAREGYHVILAGRSSQLLSETVQQIRDQQPDAHLEAFQID 120
Query: 121 LSSYKSIKKFETSLNQWIKDSNMEHSIQLLVNNAGILAKSYRITEDGLDEMIQANYIGPF 180
LSSYKSIKKFETSLNQWIKDSNMEHSIQLLVNNAGILAKSYRITEDGLDEMIQANYIGPF
Sbjct: 121 LSSYKSIKKFETSLNQWIKDSNMEHSIQLLVNNAGILAKSYRITEDGLDEMIQANYIGPF 180
Query: 181 VLTNILLPLLKNSSTPSRVVNLTSFTHRCVSEINLSEKGLSGVRFGHWPARRSYLLASTY 240
VLTNILLPLLKNSSTPSRVVNLTSFTHRCVSEINLSEKGLSGVRFGHWPARRSYLLASTY
Sbjct: 181 VLTNILLPLLKNSSTPSRVVNLTSFTHRCVSEINLSEKGLSGVRFGHWPARRSYLLASTY 240
Query: 241 EYTKFCLLMFSYELHRQLHLSSGVSVMAADPGVVQTGIMRELPPCXXXXXXXXXXXXXXX 300
EYTKFCLLMFSYELHRQLHLSSGVSVMAADPGVVQTGIMRELPPC
Sbjct: 241 EYTKFCLLMFSYELHRQLHLSSGVSVMAADPGVVQTGIMRELPPCLSWLALSVLRLLNLL 300
Query: 301 QQPDTGXXXXXXXXXXXXXSSGKYFFGGKGRTITSSQLSYNVEVAKKLWAESLALFNELQ 360
QQPDTG SSGKYFFGGKGRTITSSQLSYNVEVAKKLWAESLALFNELQ
Sbjct: 301 QQPDTGVDAVLDAALAPPDSSGKYFFGGKGRTITSSQLSYNVEVAKKLWAESLALFNELQ 360
Query: 361 NRVCELRTS 369
NRVCELRTS
Sbjct: 361 NRVCELRTS 369
>Os01g0151700 Similar to Short-chain dehydrogenase Tic32
Length = 321
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 107/201 (53%), Gaps = 19/201 (9%)
Query: 85 GYHVILAGRSSQLLSETVQQIRDQQPDAHLEAFQIDLSSYKSIKKFETSLNQWIKDSNME 144
G HVI+A R+++ S ++I ++ P AH++ ++DLSS KS++ F N +M
Sbjct: 57 GAHVIIAARNTEAASVVRKKIIEENPKAHIDVLKLDLSSLKSVRAFADQFN------SMN 110
Query: 145 HSIQLLVNNAGILAKSYRITEDGLDEMIQANYIGPFVLTNILLPLLKNSSTPS----RVV 200
+ +L+NNAG++ + ++EDG++ N++G F+LTN+LL +K ++ + R+V
Sbjct: 111 LPLNILINNAGVMFCPFGLSEDGVEMQFATNHLGHFLLTNLLLDNMKATAKSTGIEGRIV 170
Query: 201 NLTSFTHRCVSEINLSEKGLSGVRFGHWPARRSYLLASTYEYTKFCLLMFSYELHRQL-H 259
NL+S H G+ F ++Y Y +K ++ + EL R+L
Sbjct: 171 NLSSVAHLHTYP--------KGIEFDKLNDEKTYDDKMAYGQSKLANILHAKELSRRLKE 222
Query: 260 LSSGVSVMAADPGVVQTGIMR 280
+ +++ PG++ T +MR
Sbjct: 223 EGANITINCVHPGLIMTNLMR 243
>Os11g0181700 Similar to Short-chain dehydrogenase Tic32
Length = 332
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 111/209 (53%), Gaps = 31/209 (14%)
Query: 83 REGYHVILAGRSSQLLSETVQQIRDQQPDAHLEAFQIDLSSYKSIKKFETSLNQWIKDSN 142
R G VI+ R+ + + Q I ++ P + L ++DL+S S+++F T+ DS+
Sbjct: 57 RRGAEVIIPARTMESGNAVKQSIAEEVPGSRLHVMEMDLASLDSVRRFATAF-----DSS 111
Query: 143 MEHSIQLLVNNAGILAKSYRITEDGLDEMIQANYIGPFVLTNILLPLLKNSSTPS----R 198
H + +L+NNAGI+ +++++DG++ N++G F+LTN+LL +K+++ + R
Sbjct: 112 HTH-LNILINNAGIMGCPFKLSKDGIELQFATNHVGHFLLTNLLLDKMKSTARKTGVQGR 170
Query: 199 VVNLTSFTHR-----CVSEINLSEKGLSGVRFGHWPARRSYLLASTYEYTKFCLLMFSYE 253
+VN++S H+ C L++K +R L+A Y ++K ++ + E
Sbjct: 171 IVNVSSIAHKRSDGSCFDLNKLNDK-----------SRYKPLIA--YAHSKLANILHANE 217
Query: 254 LHRQLHLSSGVSVMAAD--PGVVQTGIMR 280
L ++ G ++ A PGV+ T I R
Sbjct: 218 LAKRFQ-EEGCNLTANSLHPGVILTNITR 245
>Os09g0570300 Similar to Short-chain dehydrogenase Tic32
Length = 316
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 119/278 (42%), Gaps = 24/278 (8%)
Query: 85 GYHVILAGRSSQLLSETVQQIRDQQPDAHLEAFQIDLSSYKSIKKFETSLNQWIKDSNME 144
G HV++A R+ I P A L+ ++DL+S S++ F + +
Sbjct: 56 GAHVVMAVRNLAAAQPVRDAILADAPAASLDLMELDLASMDSVRAFASDF------AAKG 109
Query: 145 HSIQLLVNNAGILAKSYRITEDGLDEMIQANYIGPFVLTNILLPLLKNSSTPS----RVV 200
+ +L+NNAG++A + +++DG++ N++G F+LT++LL +K +S S R+V
Sbjct: 110 LPLNILINNAGVMATPFSLSKDGIELQFATNHVGHFLLTHLLLETMKKTSRESNVEGRIV 169
Query: 201 NLTSFTHRCVSEINLSEKGLSGVRFGHWPARRSYLLASTYEYTKFCLLMFSYELHRQLHL 260
N++S HR G+RF Y Y +K ++ + EL R+
Sbjct: 170 NVSSEGHRFAYR--------EGIRFAKINDESEYNSIGAYGQSKLANILHANELARRFK- 220
Query: 261 SSGVSVMAAD--PGVVQTGIMRELPPCXXXXXXXXXXXXXXXQQPDTGXXXXXXXXXXXX 318
GV++ A PG + T ++R QQ
Sbjct: 221 DEGVNITANSLHPGSIITNLLRHHSILDVLHRTLGKLVLKNAQQ-GAATTCYVALHPQVK 279
Query: 319 XSSGKYFFGGKGRTITSSQLSYNVEVAKKLWAESLALF 356
SGKYF +S+ ++E+AK+LW S+ L
Sbjct: 280 GVSGKYF--SDSNVNEASEKGNDMELAKRLWEYSIELI 315
>Os11g0181800 Similar to Short-chain dehydrogenase Tic32
Length = 329
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 123/277 (44%), Gaps = 34/277 (12%)
Query: 85 GYHVILAGRSSQLLSETVQQIRDQQPDAHLEAFQIDLSSYKSIKKFETSLNQWIKDSNME 144
G VIL R+ + + Q + ++ P + L ++DLSS S++ F S N S+
Sbjct: 59 GAEVILPARTLESGMKVKQSLAEEIPSSKLHVMEMDLSSLDSVRSFAKSFN-----SSYR 113
Query: 145 HSIQLLVNNAGILAKSYRITEDGLDEMIQANYIGPFVLTNILLPLLKNSSTPS----RVV 200
H + +L+NNAG+++ + +++DG++ N++G F+LTN+LL +K ++ + R++
Sbjct: 114 H-LNVLINNAGVMSCPFGLSKDGIELQFATNHVGHFLLTNLLLDKMKATAKETGLQGRII 172
Query: 201 NLTSFTHR-----CVSEINLSEKGLSGVRFGHWPARRSYLLASTYEYTKFCLLMFSYELH 255
N++S +HR C L++K Y Y ++K ++ + EL
Sbjct: 173 NVSSISHRGSDGSCFDLDKLNDK-------------SKYRPFKAYGHSKLANILHANELS 219
Query: 256 RQLHLSSGVSVMAAD--PGVVQTGIMRELPPCXXXXXXXXXXXXXXXQQPDTGXXXXXXX 313
R+ G ++ A PGV+ T + R + P
Sbjct: 220 RRFQ-EEGCNLTANSLHPGVIATNLPRHILTNSLIISIFSVMKPFLKSIPQGAATNCYLA 278
Query: 314 XXXXXXS-SGKYFFGGKGRTITSSQLSYNVEVAKKLW 349
SGKYF T + ++ + E+AKKLW
Sbjct: 279 LHPGLKDVSGKYF--ADCNEATPTAVARDAELAKKLW 313
>Os02g0116500 Similar to Protochlorophyllide reductase homologue
Length = 335
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 108/205 (52%), Gaps = 21/205 (10%)
Query: 85 GYHVILAGRSSQLLSETVQQIRDQQPDA----HLEAFQIDLSSYKSIKKFETSLNQWIKD 140
G HV++A R ++L E +Q+ ++ + + E ++DL S S+ KF + N +
Sbjct: 39 GGHVVMAVRRTKLAQELIQKWQNDNSEIGKPLNAEVMELDLLSLDSVVKFADAWNARMA- 97
Query: 141 SNMEHSIQLLVNNAGI--LAKSYRITEDGLDEMIQANYIGPFVLTNILLPLLKNSSTPSR 198
+ +L+NNAGI + + R ++DG +E +Q N++ P +L +LLP L S PSR
Sbjct: 98 -----PLHVLINNAGIFSIGEPQRFSKDGYEEHMQVNHLAPALLAVLLLPSLLRGS-PSR 151
Query: 199 VVNLTSFTHRCVSEINLSEKGLSGVRFGHWPARRSYLLASTYEYTKFCLLMFSYELHRQL 258
+VN+ S H V ++ + L+ +R + Y +K + FS LHR++
Sbjct: 152 IVNVNSVMH-TVGFVDAEDMNLTS-------GKRKFTSLMGYSNSKLAQIKFSSMLHRRI 203
Query: 259 HLSSGVSVMAADPGVVQTGIMRELP 283
+ ++V+ A PG+V T + R+LP
Sbjct: 204 PAEAEINVICASPGIVHTNVARDLP 228
>Os04g0291100 Similar to Short-chain dehydrogenase Tic32
Length = 314
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 94/202 (46%), Gaps = 19/202 (9%)
Query: 85 GYHVILAGRSSQLLSETVQQIRDQQPDAHLEAFQIDLSSYKSIKKFETSLNQWIKDSNME 144
G HV++ R+S + +I Q P A +E +DLS S+++F + N +
Sbjct: 54 GLHVVMGVRNSSAGARVRDEIVRQLPAAKIEMLDLDLSLMSSVRRFAENFNA------LN 107
Query: 145 HSIQLLVNNAGILAKSYRITEDGLDEMIQANYIGPFVLTNILLPLLK----NSSTPSRVV 200
+ +LVNNAGI ++++E+G++ N++G F+LT++LL +K S RVV
Sbjct: 108 LPLNILVNNAGIAFVPFKLSEEGIELHFSTNHLGHFLLTDLLLEKMKVTAIESGIEGRVV 167
Query: 201 NLTSFTHRCVSEINLSEKGLSGVRFGHWPARRSYLLASTYEYTKFCLLMFSYELHRQL-H 259
+ S +++ G+RF Y Y +K ++ S L L
Sbjct: 168 IVASNSYKHPYR--------EGIRFDKINDESGYNKIFAYGQSKLANILHSNLLSSNLKE 219
Query: 260 LSSGVSVMAADPGVVQTGIMRE 281
+ V+V + PG V T IMR
Sbjct: 220 QDAKVTVNSLHPGAVVTNIMRH 241
>Os10g0548000 Similar to Short-chain dehydrogenase Tic32
Length = 319
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 118/273 (43%), Gaps = 28/273 (10%)
Query: 85 GYHVILAGRSSQLLSETVQQIRDQQPDAHLEAFQIDLSSYKSIKKFETSLNQWIKDSNME 144
G V++A R+ + + IR + A + ++DLSS S+++F + + +
Sbjct: 55 GVRVVMAVRNVAAGHKAREAIRAEIHGAIVHVLEMDLSSMDSVRRFASEFDS------LN 108
Query: 145 HSIQLLVNNAGILAKSYRITEDGLDEMIQANYIGPFVLTNILLPLLKNSS----TPSRVV 200
+ +L+NNAGIL+K + DGL+ N+IG F+LTN+LL +K++S R++
Sbjct: 109 LPLNILINNAGILSKDCIRSIDGLELHFATNHIGHFLLTNLLLENMKSTSRTTGVEGRII 168
Query: 201 NLTSFTHRCVSEINL---SEKGLSGVRFGHWPARRSYLLASTYEYTKFCLLMFSYELHRQ 257
N++S H + S K LS RF + A Y +K ++ S EL R
Sbjct: 169 NVSSSGHILTYPEGICFDSVKDLS--RFSTYIA---------YGQSKLANILHSTELARI 217
Query: 258 LHLSS-GVSVMAADPGVVQTGIMRELPPCXXXXXXXXXXXXXXXQQPDTGXXXXXXXXXX 316
L +S A PG V T + + +Q
Sbjct: 218 LKGDGVNISANAIHPGFVGTNLFKNWTMANAVVNTIGRIVCKTVEQ-GAATTCYVALHPQ 276
Query: 317 XXXSSGKYFFGGKGRTITSSQLSYNVEVAKKLW 349
SGKYF T SSQ S N E+AKKLW
Sbjct: 277 VTGISGKYFSNCNLET-PSSQAS-NAELAKKLW 307
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.134 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,537,295
Number of extensions: 302429
Number of successful extensions: 736
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 731
Number of HSP's successfully gapped: 8
Length of query: 369
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 267
Effective length of database: 11,709,973
Effective search space: 3126562791
Effective search space used: 3126562791
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)