BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0894600 Os01g0894600|AK073332
(219 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0894600 RINGv domain containing protein 294 3e-80
Os02g0577100 RINGv domain containing protein 115 3e-26
Os08g0436200 RINGv domain containing protein 112 3e-25
Os11g0600700 Similar to RING domain protein 107 8e-24
Os01g0121200 RINGv domain containing protein 100 9e-22
Os01g0303600 RINGv domain containing protein 99 2e-21
Os05g0552400 RINGv domain containing protein 99 3e-21
Os05g0355300 Zinc finger, RING-type domain containing protein 84 1e-16
>Os01g0894600 RINGv domain containing protein
Length = 219
Score = 294 bits (752), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 151/219 (68%), Positives = 151/219 (68%)
Query: 1 MARTEKVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIECRICQEEGDEGAMDSPCAC 60
MARTEKVA IECRICQEEGDEGAMDSPCAC
Sbjct: 1 MARTEKVAGDGCSGGGGGGGEGQVEVEVGVGMGMDGKGMIECRICQEEGDEGAMDSPCAC 60
Query: 61 TGTLKFAHRKCIQRWCDKKGNITCEICNQVYSPNYVLPPTKCCSAEMDMDLRQSWVGRID 120
TGTLKFAHRKCIQRWCDKKGNITCEICNQVYSPNYVLPPTKCCSAEMDMDLRQSWVGRID
Sbjct: 61 TGTLKFAHRKCIQRWCDKKGNITCEICNQVYSPNYVLPPTKCCSAEMDMDLRQSWVGRID 120
Query: 121 PHDSHFXXXXXXXXXXXXXXFDDCVSSNSSGATCCXXXXXXXXXXXXXXXXXXXXXXXSM 180
PHDSHF FDDCVSSNSSGATCC SM
Sbjct: 121 PHDSHFLAIAIAEQQLLQAEFDDCVSSNSSGATCCRTVVLILMLLLLVRHVVVFVRDVSM 180
Query: 181 LQDATVLFSATLQFAGFFLPCYVIARSCYAFQHRRRRQV 219
LQDATVLFSATLQFAGFFLPCYVIARSCYAFQHRRRRQV
Sbjct: 181 LQDATVLFSATLQFAGFFLPCYVIARSCYAFQHRRRRQV 219
>Os02g0577100 RINGv domain containing protein
Length = 250
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 94/184 (51%), Gaps = 7/184 (3%)
Query: 40 IECRICQEEGDEGAMDSPCACTGTLKFAHRKCIQRWCDKKGNITCEICNQVYSPNYVLPP 99
+ECRICQEE ++SPCAC+G+LK+AHR+C+QRWC++KG+I CEIC+ Y P Y PP
Sbjct: 30 VECRICQEEDLAKNLESPCACSGSLKYAHRECVQRWCNEKGDIICEICHVSYKPGYTAPP 89
Query: 100 TKCCSAEMDMDLRQS-WV---GRIDPHDSHFXXXXXXXXXXXXXXFDDCVSSNSSGATCC 155
+ E +++ W R+D HD +D+ ++N++ A C
Sbjct: 90 -QVHHDETTIEISSGDWSISGNRLDLHDPRILAMAAAQHRLLEDEYDEYTATNNNAAAFC 148
Query: 156 XXXXXXXXXXXXXXXXXXXXXXXSMLQDATVLFSA-TLQFAGFFLPCYVIARSCYAFQHR 214
DA+ +FS L+ AGF LPCY++A + Q +
Sbjct: 149 RSIFLILMALLLLRHTLTITSSDDE-DDASAIFSLFLLRAAGFLLPCYIMAWAISIMQRQ 207
Query: 215 RRRQ 218
R+RQ
Sbjct: 208 RQRQ 211
>Os08g0436200 RINGv domain containing protein
Length = 276
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 89/184 (48%), Gaps = 9/184 (4%)
Query: 40 IECRICQEEGDEGAMDSPCACTGTLKFAHRKCIQRWCDKKGNITCEICNQVYSPNYVLPP 99
+ECRICQEE + ++SPCACTG+LK+AHR C+QRWCD+KG++TCEIC++ Y Y P
Sbjct: 59 VECRICQEEDNISNLESPCACTGSLKYAHRACVQRWCDEKGDLTCEICHEPYKHGYTALP 118
Query: 100 TKCCSAEMDMDLRQSWV---GRIDPHDSHFXXXXXXXXXXXXXXFDDCVSSNSSGATCCX 156
+ E +D+ W D HD +DD +N+S A C
Sbjct: 119 -RAHPDETTIDISGGWTITGTAFDLHDPRI--IAMAQNHIMEADYDDYSVTNASSAAFCR 175
Query: 157 XXXXXXXXXXXXXXXXXXXXXXSMLQDATVLFSA-TLQFAGFFLPCYVIARSCYAFQHRR 215
DA+ +F L+ GF LP Y++A + Q RR
Sbjct: 176 SAALILMALLVLRHVLVLTDEDE--DDASSMFLLFLLRVTGFLLPFYIMAWAINILQGRR 233
Query: 216 RRQV 219
RRQV
Sbjct: 234 RRQV 237
>Os11g0600700 Similar to RING domain protein
Length = 278
Score = 107 bits (266), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 86/179 (48%), Gaps = 8/179 (4%)
Query: 41 ECRICQEEGDEGAMDSPCACTGTLKFAHRKCIQRWCDKKGNITCEICNQVYSPNYVLPPT 100
ECRICQEE ++ PCAC+G+LK+AHR C+QRWC++KG+ITCEIC++ Y Y PP
Sbjct: 58 ECRICQEEDSIKNLEKPCACSGSLKYAHRACVQRWCNEKGDITCEICHEQYKHGYTAPP- 116
Query: 101 KCCSAEMDMDLRQSWVGRIDPHDSHFXXXXXXXXXXXXXXFDDCVSSNSSGATCCXXXXX 160
+ + +D+ W D +D+ +++SGA C
Sbjct: 117 RVEPDDTIIDIGGDWA-----RDPRIIAVAAAQRRLLETEYDEYAGTDASGAAFCRSAAL 171
Query: 161 XXXXXXXXXXXXXXXXXXSMLQDATVLFSA-TLQFAGFFLPCYVIARSCYAFQHRRRRQ 218
DA+ +FS L+ AGF LPCY++A RR+RQ
Sbjct: 172 ILMALLLLRHALSISDNEGD-DDASTMFSLFLLRAAGFLLPCYIMAWIFSILHRRRQRQ 229
>Os01g0121200 RINGv domain containing protein
Length = 269
Score = 100 bits (249), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 82/175 (46%), Gaps = 3/175 (1%)
Query: 40 IECRICQEEGDEGAMDSPCACTGTLKFAHRKCIQRWCDKKGNITCEICNQVYSPNYVLPP 99
+ECRICQEE + +M++PCAC G+LK+AHRKCIQRWC++KG+ CEIC Q + P Y P
Sbjct: 53 VECRICQEEDWDTSMEAPCACCGSLKYAHRKCIQRWCNEKGDTVCEICLQQFKPGYTAPQ 112
Query: 100 TKCCSAEMDMDLRQSW-VGRIDPHDSHFXXXXXXXXXXXXXXFDDCVSSNSSGATCCXXX 158
+ M+ R +W + R D HDS ++D + + +T C
Sbjct: 113 QLFHYGSIPMNFRGNWEIARQDLHDSQI-ITMVPSERDFMDGYEDYLPIRTRSSTLCCRT 171
Query: 159 XXXXXXXXXXXXXXXXXXXXSMLQDATVLFS-ATLQFAGFFLPCYVIARSCYAFQ 212
+ + LFS L+ AG P V+ R+ F
Sbjct: 172 VAIIFMSLLVLRHTLPLMIGGDGEYSLALFSLLVLRTAGILFPILVMVRALATFH 226
>Os01g0303600 RINGv domain containing protein
Length = 220
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 83/172 (48%), Gaps = 15/172 (8%)
Query: 41 ECRICQEEGDEG--AMDSPCACTGTLKFAHRKCIQRWCDKKGNITCEICNQVYSPNYVLP 98
+CRIC EE +EG AM+SPC C+G+LK+AHR C+QRWCD+KG+ CEIC Q + P Y P
Sbjct: 14 QCRICHEEEEEGCTAMESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQNFEPGYTAP 73
Query: 99 PTKCCSAEMDMDLRQSW-VGR--IDPHDSHFXXXXXXXXXXXXXXFDDCVSSNSSGATCC 155
P K A + + +R+S V R +P D+ + +C + AT C
Sbjct: 74 PKKAQPAHVAVTIRESLEVPRPSYEPEDTPL---------IGEQDYAECAGAAGRSATWC 124
Query: 156 XXXXXXXXXXXXXXXXXXXXXXXSMLQDATVLFSA-TLQFAGFFLPCYVIAR 206
+ Q A L + L+ +G LP YV+ R
Sbjct: 125 RSVAVTFTAVLLLRHLVAVVTVGAAHQYAFSLLTIYLLRASGILLPFYVVMR 176
>Os05g0552400 RINGv domain containing protein
Length = 252
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 81/181 (44%), Gaps = 8/181 (4%)
Query: 40 IECRICQEEGDEGAMDSPCACTGTLKFAHRKCIQRWCDKKGNITCEICNQVYSPNYVLPP 99
+ECRICQEE D+ M++PC+C G+LK+AHRKCIQRWCD+KG+ CEIC Q Y+PNY P
Sbjct: 53 VECRICQEEDDQTYMETPCSCRGSLKYAHRKCIQRWCDEKGDTICEICLQQYTPNYTAP- 111
Query: 100 TKCCSAEMDMDLRQSWVGRIDPHDSHFXXXXXXXXXXXXXXFDDCVSSNSSGATCCXXXX 159
A++ R S R + +D + N G C
Sbjct: 112 -----AKLFQHGRNSIFFRTPGYIQAQVMQNTDRSAAASTSYDPEL-PNPKGVIYCRIVA 165
Query: 160 XXXXXXXXXXXXXXXXXXXSMLQDATVLFSATLQFAGFFLPCYVIARSCYAFQHRR-RRQ 218
++ L+ AG +P Y+I S HRR +RQ
Sbjct: 166 LTLMVLLLLHDAISVFLGDHDAYTVAMITLLMLRTAGIVIPVYIILLSLTELLHRRNQRQ 225
Query: 219 V 219
+
Sbjct: 226 I 226
>Os05g0355300 Zinc finger, RING-type domain containing protein
Length = 213
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 49/71 (69%), Gaps = 2/71 (2%)
Query: 44 ICQEEGDE--GAMDSPCACTGTLKFAHRKCIQRWCDKKGNITCEICNQVYSPNYVLPPTK 101
IC EE DE A++SPC C+G+LK+AHR C+QRWCD+KG+ CEIC Q + +Y +PP K
Sbjct: 8 ICHEEEDEWCAAIESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQNFESDYTIPPKK 67
Query: 102 CCSAEMDMDLR 112
E + +R
Sbjct: 68 VQVVETAVTVR 78
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.136 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,483,482
Number of extensions: 177347
Number of successful extensions: 376
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 374
Number of HSP's successfully gapped: 8
Length of query: 219
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 122
Effective length of database: 11,971,043
Effective search space: 1460467246
Effective search space used: 1460467246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 154 (63.9 bits)