BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0857500 Os01g0857500|AK068791
(253 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0857500 Xanthine/uracil/vitamin C permease family protein 484 e-137
Os07g0490500 Xanthine/uracil/vitamin C permease family protein 284 5e-77
Os01g0759900 Similar to Permease 1 145 2e-35
Os08g0369000 Similar to Permease 1 137 5e-33
Os02g0741800 Similar to Permease 1 135 3e-32
Os12g0583900 Similar to Permease 133 1e-31
Os08g0420600 Similar to Permease 1 131 5e-31
Os09g0381100 Xanthine/uracil/vitamin C permease family protein 129 2e-30
Os03g0823800 Similar to Permease 1 129 2e-30
Os03g0694500 Similar to Permease 1 122 4e-28
>Os01g0857500 Xanthine/uracil/vitamin C permease family protein
Length = 253
Score = 484 bits (1247), Expect = e-137, Method: Compositional matrix adjust.
Identities = 242/253 (95%), Positives = 242/253 (95%)
Query: 1 MHFGLKVGSYHASSLFVATRPPTAGVVSRGIGVEGVSTVLAGLWGTGVGSATITENVHTI 60
MHFGLKVGSYHASSLFVATRPPTAGVVSRGIGVEGVSTVLAGLWGTGVGSATITENVHTI
Sbjct: 1 MHFGLKVGSYHASSLFVATRPPTAGVVSRGIGVEGVSTVLAGLWGTGVGSATITENVHTI 60
Query: 61 AVTKMGNRRAVGFGAIVLILLSFVGKVGAFIASIPDVLVAALLCFMWAMLCALGLSNLRY 120
AVTKMGNRRAVGFGAIVLILLSFVGKVGAFIASIPDVLVAALLCFMWAMLCALGLSNLRY
Sbjct: 61 AVTKMGNRRAVGFGAIVLILLSFVGKVGAFIASIPDVLVAALLCFMWAMLCALGLSNLRY 120
Query: 121 SAKGSSRNSIVVGLALFLSLSVPSYFQQYRLQPNSNSSVPTYFQPYIVASHGPIHTGSSG 180
SAKGSSRNSIVVGLALFLSLSVPSYFQQYRLQPNSNSSVPTYFQPYIVASHGPIHTGSSG
Sbjct: 121 SAKGSSRNSIVVGLALFLSLSVPSYFQQYRLQPNSNSSVPTYFQPYIVASHGPIHTGSSG 180
Query: 181 VNYILNTLLSLNMVIAFLVALILDNTVPGGRQERGLYVWXXXXXXXXXXXVMKDYELPFK 240
VNYILNTLLSLNMVIAFLVALILDNTVPGGRQERGLYVW VMKDYELPFK
Sbjct: 181 VNYILNTLLSLNMVIAFLVALILDNTVPGGRQERGLYVWSEAEAARRESAVMKDYELPFK 240
Query: 241 IGHAFRWVKCVGL 253
IGHAFRWVKCVGL
Sbjct: 241 IGHAFRWVKCVGL 253
>Os07g0490500 Xanthine/uracil/vitamin C permease family protein
Length = 312
Score = 284 bits (726), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 141/248 (56%), Positives = 186/248 (75%), Gaps = 2/248 (0%)
Query: 6 KVGSYHASSLFVATRPPTAGVVSRGIGVEGVSTVLAGLWGTGVGSATITENVHTIAVTKM 65
+ SYHA+SL V PPT GVVSRGIG EG+ST++AG+WGTG GS T+TEN+HT+ TKM
Sbjct: 67 SLSSYHATSLLVNLSPPTRGVVSRGIGFEGISTLIAGVWGTGTGSTTLTENIHTLENTKM 126
Query: 66 GNRRAVGFGAIVLILLSFVGKVGAFIASIPDVLVAALLCFMWAMLCALGLSNLRYSAKGS 125
+RRA+ FGA++L++ SF GK+GA +ASIP L A++LCF WA++ ALGLS LRY+ S
Sbjct: 127 ASRRALQFGAVLLVIFSFFGKIGALLASIPVALAASVLCFTWALIVALGLSTLRYTQAAS 186
Query: 126 SRNSIVVGLALFLSLSVPSYFQQYRLQPNSNSSVPTYFQPYIVASHGPIHTGSSGVNYIL 185
SRN I+VG LF+S+SVP+YFQQY +P++N +P+Y PY AS GP+ +GS+G+N+ +
Sbjct: 187 SRNMIIVGFTLFISMSVPAYFQQY--EPSTNLILPSYLLPYAAASSGPVRSGSNGLNFAV 244
Query: 186 NTLLSLNMVIAFLVALILDNTVPGGRQERGLYVWXXXXXXXXXXXVMKDYELPFKIGHAF 245
N LLS+N+V+A LVALILDNTVPG RQERG+Y+W ++ Y LP KI F
Sbjct: 245 NALLSINVVVALLVALILDNTVPGSRQERGVYIWSDPNSLEMDPASLEPYRLPEKISCWF 304
Query: 246 RWVKCVGL 253
RW KCVG+
Sbjct: 305 RWAKCVGI 312
>Os01g0759900 Similar to Permease 1
Length = 448
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 127/239 (53%), Gaps = 18/239 (7%)
Query: 9 SYHASSLFVATRPPTAGVVSRGIGVEGVSTVLAGLWGTGVGSATITENVHTIAVTKMGNR 68
SY A++ + PP A ++SRGIG +G+ +L GL+GTG GS ENV + T++G+R
Sbjct: 223 SYKAAARLASATPPPAHILSRGIGWQGIGILLDGLFGTGTGSTVSVENVGLLGSTRIGSR 282
Query: 69 RAVGFGAIVLILLSFVGKVGAFIASIPDVLVAALLCFMWAMLCALGLSNLRYSAKGSSRN 128
R + A +I S +GK GA ASIP + AA+ C ++ ++ A+GLS L+++ S RN
Sbjct: 283 RVIQISAGFMIFFSMLGKFGALFASIPFTIFAAVYCVLFGLVAAVGLSFLQFTNMNSMRN 342
Query: 129 SIVVGLALFLSLSVPSYFQQYRLQPNSNSSVPTYFQPYIVASHGPIHTGSSGVNYILNTL 188
+VG+++FL LSVP YF +Y + A GP HT + N +NT+
Sbjct: 343 LFIVGVSIFLGLSVPEYFFRYSM----------------AAQRGPAHTKAGWFNDYINTI 386
Query: 189 LSLNMVIAFLVALILDNT--VPGGRQERGLYVWXXXXXXXXXXXVMKDYELPFKIGHAF 245
S + +VA+ LDNT V ++RG+ W + Y LPF + F
Sbjct: 387 FSSPPTVGLIVAVFLDNTLEVKNAAKDRGMPWWVPFRSFKGDARSEEFYSLPFNLNRFF 445
>Os08g0369000 Similar to Permease 1
Length = 343
Score = 137 bits (346), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 127/240 (52%), Gaps = 18/240 (7%)
Query: 8 GSYHASSLFVATRPPTAGVVSRGIGVEGVSTVLAGLWGTGVGSATITENVHTIAVTKMGN 67
G++ A++ + PP V+SRGIG +G+ + GL+GTG GS EN+ + T++G+
Sbjct: 117 GAFKAAARLASATPPPPYVLSRGIGWQGIGLLFDGLFGTGTGSTVSVENIGLLGSTRIGS 176
Query: 68 RRAVGFGAIVLILLSFVGKVGAFIASIPDVLVAALLCFMWAMLCALGLSNLRYSAKGSSR 127
RR + A +I S +G+ GA ASIP + AA+ C M+ + A+GLS ++++ S R
Sbjct: 177 RRVIQISAGFMIFFSILGRFGALFASIPFTMFAAIYCVMFGYVGAVGLSFMQFTNMNSMR 236
Query: 128 NSIVVGLALFLSLSVPSYFQQYRLQPNSNSSVPTYFQPYIVASHGPIHTGSSGVNYILNT 187
+ ++G++LFL +S+P YF +Y + A HGP HT + N +NT
Sbjct: 237 SLFIIGVSLFLGISIPEYFFRYTMS----------------ALHGPAHTRAGWFNDYINT 280
Query: 188 LLSLNMVIAFLVALILDNT--VPGGRQERGLYVWXXXXXXXXXXXVMKDYELPFKIGHAF 245
+ S + +VA+ILDNT V ++RG+ W + Y LPF + F
Sbjct: 281 VFSSPPTVGLIVAVILDNTLEVRDAARDRGMPWWARFRTFRGDSRNEEFYTLPFNLNRFF 340
>Os02g0741800 Similar to Permease 1
Length = 538
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 125/242 (51%), Gaps = 20/242 (8%)
Query: 8 GSYHASSLFVATRPPTAGVVSRGIGVEGVSTVLAGLWGTGVGSATITENVHTIAVTKMGN 67
G++ A S + + P V+SRGIG +G+ +L GL+GTG GS+ EN +A+T++G+
Sbjct: 310 GAFIAVSRYASATPLPPSVLSRGIGWQGIGILLDGLFGTGNGSSVSVENAGLLALTRVGS 369
Query: 68 RRAVGFGAIVLILLSFVGKVGAFIASIPDVLVAALLCFMWAMLCALGLSNLRYSAKGSSR 127
RR V A +I S +GK GA ASIP + AAL C +A + + G+ L++ S R
Sbjct: 370 RRVVQISAGFMIFFSILGKFGAVFASIPPPIFAALYCIFFAYVGSAGVGFLQFCNLNSFR 429
Query: 128 NSIVVGLALFLSLSVPSYFQQYRLQPNSNSSVPTYFQPYIVASHGPIHTGSSGVNYILNT 187
++G ++F+ LSVP YF +Y VA +GP+HT S N I+N
Sbjct: 430 TKFILGFSVFMGLSVPQYFNEYT----------------SVAGYGPVHTHSRWFNDIVNV 473
Query: 188 LLSLNMVIAFLVALILDNTV----PGGRQERGLYVWXXXXXXXXXXXVMKDYELPFKIGH 243
+ S +A VA +LDNT+ R++RG + W + Y LPF +
Sbjct: 474 IFSSKAFVAGFVAYLLDNTIHRHDSSVRKDRGHHWWDKFRSYRTDTRSEEFYSLPFNLNK 533
Query: 244 AF 245
F
Sbjct: 534 FF 535
>Os12g0583900 Similar to Permease
Length = 556
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 118/211 (55%), Gaps = 18/211 (8%)
Query: 8 GSYHASSLFVATRPPTAGVVSRGIGVEGVSTVLAGLWGTGVGSATITENVHTIAVTKMGN 67
G++ A++ PP A V+SR +G++G+ L G++G GS+ EN+ + +TK+G+
Sbjct: 325 GAHFATARLAGATPPPASVLSRSVGLQGIGMFLEGIFGAPAGSSVSVENIGLLGLTKVGS 384
Query: 68 RRAVGFGAIVLILLSFVGKVGAFIASIPDVLVAALLCFMWAMLCALGLSNLRYSAKGSSR 127
RR + +I S GK GAF ASIP + AA+ C ++ ++ A+G+S +++ K S R
Sbjct: 385 RRVIQISTGFMIFFSIFGKFGAFFASIPLPIFAAIFCILFGIVAAVGVSYMQFVNKNSMR 444
Query: 128 NSIVVGLALFLSLSVPSYFQQYRLQPNSNSSVPTYFQPYIVASHGPIHTGSSGVNYILNT 187
N ++GL+LFL +SVP YF +Y AS GP T + N I+NT
Sbjct: 445 NIYIIGLSLFLGISVPQYFHEYTAS----------------ASTGPARTNAGWFNDIINT 488
Query: 188 LLSLNMVIAFLVALILDNTVP--GGRQERGL 216
+ + ++ +VA ILDNT+ G +RGL
Sbjct: 489 VFASGPTVSLIVASILDNTLEFRGYENDRGL 519
>Os08g0420600 Similar to Permease 1
Length = 533
Score = 131 bits (330), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 117/229 (51%), Gaps = 22/229 (9%)
Query: 21 PPTAGVVSRGIGVEGVSTVLAGLWGTGVGSATITENVHTIAVTKMGNRRAVGFGAIVLIL 80
PP+ V+ RGIG +G+ T++ +GT G+A EN +A+T +G+RR V A +I
Sbjct: 320 PPS--VLGRGIGWQGIGTLIGAFFGTANGTAVSVENAGLLALTHVGSRRVVQISAGFMIF 377
Query: 81 LSFVGKVGAFIASIPDVLVAALLCFMWAMLCALGLSNLRYSAKGSSRNSIVVGLALFLSL 140
S +GK GA ASIP + AAL C +A + A GLS L++ S R +VG + F+ L
Sbjct: 378 FSILGKFGAIFASIPLPIFAALYCIFFAYIGACGLSFLQFCNLNSFRTKFIVGFSFFMGL 437
Query: 141 SVPSYFQQYRLQPNSNSSVPTYFQPYIVASHGPIHTGSSGVNYILNTLLSLNMVIAFLVA 200
SVP YF +Y VA +GP+HTG+ N ++N + +A L+A
Sbjct: 438 SVPQYFNEYTS----------------VAGYGPVHTGARWFNDMINVPFASKPFVAGLIA 481
Query: 201 LILDNTVP----GGRQERGLYVWXXXXXXXXXXXVMKDYELPFKIGHAF 245
LDNT+ G R++RG + W + Y LPF + F
Sbjct: 482 YFLDNTIQRRDNGVRRDRGYHWWDKFRSFKTDTRSEEFYSLPFNLNKFF 530
>Os09g0381100 Xanthine/uracil/vitamin C permease family protein
Length = 530
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 122/242 (50%), Gaps = 20/242 (8%)
Query: 8 GSYHASSLFVATRPPTAGVVSRGIGVEGVSTVLAGLWGTGVGSATITENVHTIAVTKMGN 67
G++ A+S + + ++SRGIG +G+S ++ +GT G++ ENV +A+T +G+
Sbjct: 302 GAFIAASRYASATMIPPSIISRGIGWQGISILIDSFFGTANGTSVSVENVGLLALTHVGS 361
Query: 68 RRAVGFGAIVLILLSFVGKVGAFIASIPDVLVAALLCFMWAMLCALGLSNLRYSAKGSSR 127
RR V A +I + +GK GA ASIP + A + C +A + A GLS L++ S R
Sbjct: 362 RRVVQISAGFMIFFAILGKFGALFASIPLPIFAGMYCIFFAYVGACGLSFLQFCNLNSFR 421
Query: 128 NSIVVGLALFLSLSVPSYFQQYRLQPNSNSSVPTYFQPYIVASHGPIHTGSSGVNYILNT 187
++G A F+ +SVP YF +Y VA +GP+HTG+ N ++N
Sbjct: 422 TKFILGFAFFMGISVPQYFNEYT----------------AVAGYGPVHTGARWFNDMINV 465
Query: 188 LLSLNMVIAFLVALILDNTVPGG----RQERGLYVWXXXXXXXXXXXVMKDYELPFKIGH 243
S +A LVA LDNT+ R++RG + W + Y LPF +
Sbjct: 466 PFSSKPFVAGLVAYFLDNTIETHNNTVRKDRGYHWWDKFRSFKKDARSEEFYSLPFNLNK 525
Query: 244 AF 245
F
Sbjct: 526 FF 527
>Os03g0823800 Similar to Permease 1
Length = 529
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 123/242 (50%), Gaps = 20/242 (8%)
Query: 8 GSYHASSLFVATRPPTAGVVSRGIGVEGVSTVLAGLWGTGVGSATITENVHTIAVTKMGN 67
G++ A S + + P V+SRGIG +GV +L GL+GT GS+ EN + +T++G+
Sbjct: 301 GAFIAVSRYASATPCPPSVMSRGIGWQGVGILLGGLFGTANGSSVSVENAGLLGLTRVGS 360
Query: 68 RRAVGFGAIVLILLSFVGKVGAFIASIPDVLVAALLCFMWAMLCALGLSNLRYSAKGSSR 127
RR V A +I S +GK GA ASIP ++AA+ C ++A + G+ L++ S R
Sbjct: 361 RRVVQISAGFMIFFSILGKFGAVFASIPGPIIAAIYCLLFAYVGMAGVGFLQFCNLNSFR 420
Query: 128 NSIVVGLALFLSLSVPSYFQQYRLQPNSNSSVPTYFQPYIVASHGPIHTGSSGVNYILNT 187
+VG ++F+ LSVP YF +Y VA +GP+HT + N ++N
Sbjct: 421 TKFIVGFSVFMGLSVPQYFNEYT----------------SVAGYGPVHTHARWFNDMINV 464
Query: 188 LLSLNMVIAFLVALILDNTVP----GGRQERGLYVWXXXXXXXXXXXVMKDYELPFKIGH 243
+ S + VA +LDNT+ R++RG + W + Y LPF +
Sbjct: 465 VFSSKAFVGGAVAYLLDNTLQRHDSTARKDRGHHFWDRFRSFRTDPRSEEFYSLPFNLNK 524
Query: 244 AF 245
F
Sbjct: 525 FF 526
>Os03g0694500 Similar to Permease 1
Length = 527
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 118/229 (51%), Gaps = 22/229 (9%)
Query: 21 PPTAGVVSRGIGVEGVSTVLAGLWGTGVGSATITENVHTIAVTKMGNRRAVGFGAIVLIL 80
PP+ V +RG+G +G+ST+L G+ GT GS EN +A+T++G+RR + A+ +I
Sbjct: 314 PPS--VFARGVGWQGISTILDGMCGTLTGSVASVENAGLLALTRVGSRRVIKISALFMIF 371
Query: 81 LSFVGKVGAFIASIPDVLVAALLCFMWAMLCALGLSNLRYSAKGSSRNSIVVGLALFLSL 140
S GK GA IASIP + +AL C ++A A GL L+Y + R ++ ++LFL L
Sbjct: 372 FSLFGKFGAIIASIPLPIFSALYCVLFAYSAAAGLCFLQYCNLNTLRTKFILSISLFLGL 431
Query: 141 SVPSYFQQYRLQPNSNSSVPTYFQPYIVASHGPIHTGSSGVNYILNTLLSLNMVIAFLVA 200
S+P YF++Y + GP+HT S N I+N + S +A ++A
Sbjct: 432 SIPQYFREYE----------------VFYVFGPVHTHSPAFNVIVNVIFSSPATVAAILA 475
Query: 201 LILD--NTVPGGR--QERGLYVWXXXXXXXXXXXVMKDYELPFKIGHAF 245
+LD +T G ++RG + W + Y LP+ + F
Sbjct: 476 YLLDCTHTYWDGPVWKDRGFHWWEKFKSYRHDPRSEEFYSLPYGLSKYF 524
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.139 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,935,587
Number of extensions: 296451
Number of successful extensions: 881
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 870
Number of HSP's successfully gapped: 10
Length of query: 253
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 154
Effective length of database: 11,866,615
Effective search space: 1827458710
Effective search space used: 1827458710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)