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Os07g0490500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Xanthine/uracil/vitamin C permease family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.04 (0.032) R2 : 0.441
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.45 (0.0776) R2dC : 0.432 R2C : 0.427
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.2 (0.0673) R2dN8 : 0.014 R2N8 : 0.00855
σ : 0.603
deviance : 166.39
__
_____
C
peak time of C : 22.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
126.1 0.528 8.03 -0.797 1.67 2.52 1.68 -1.29 -0.359 2.93 1.33 781 -- --
127.36 0.526 8.03 -0.743 1.74 2.72 2.1 -- -0.344 3.15 1.314 788 -- --
133.07 0.537 8.06 -0.865 1.73 2.62 -- -2.6 -0.406 3.03 1.311 778 -- --
142.56 0.556 8.03 -0.796 1.62 2.59 -- -- -0.369 3.13 1.23 806 -- --
159.19 0.588 8.06 -1.07 -- 2.39 -- -1.72 -0.578 -- 1.76 1196 -- --
153.23 0.58 8.05 -0.608 1.46 -- 0.804 -- -0.271 22.3 -- -- -- --
155.67 0.584 8.05 -0.638 1.46 -- -- -- -0.271 22.2 -- -- -- --
155.08 0.58 8.06 -0.853 -- 2.34 -- -- -0.487 -- 1.68 1185 -- --
159.14 0.588 8.03 -- 1.62 2.48 -- -- -0.281 3 1.432 790 -- --
284.36 0.788 8.01 -0.617 -- -- -- -- -0.269 -- -- -- -- --
166.39 0.603 8.04 -- 1.45 -- -- -- -0.2 22.1 -- -- -- --
173.78 0.614 8.06 -- -- 2.23 -- -- -0.391 -- 1.66 1169 -- --
294.42 0.801 8 -- -- -- -- -- -0.2 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 122.25 atmosphere 1015.0 720 < th dose independent rect. 24 19
2 122.27 radiation 1.0 720 > th dose independent rect. 8 11
13 122.90 temperature 15.0 1440 > th dose independent rect. 7 14
16 123.29 radiation 1.0 720 > th dose independent rect. 7 7
18 123.44 radiation 1.0 90 < th dose dependent sin 7 NA
19 123.52 radiation 1.0 720 > th dose independent rect. 17 21
21 123.67 humidity 70.0 90 > th dose dependent rect. 5 8
22 123.82 radiation 1.0 90 < th dose independent sin 8 NA
39 124.10 wind 7.0 720 < th dose independent rect. 19 22
53 124.41 temperature 15.0 1440 > th dose independent rect. 7 17
56 124.42 radiation 1.0 720 < th dose independent rect. 5 19
60 124.68 temperature 15.0 720 > th dose independent rect. 7 7
61 124.73 humidity 70.0 90 > th dose dependent rect. 5 10
77 124.93 humidity 80.0 90 > th dose independent rect. 5 8
80 124.94 temperature 15.0 270 > th dose independent rect. 7 11
82 124.99 humidity 90.0 270 < th dose independent rect. 7 11
83 125.05 wind 7.0 720 < th dose independent rect. 5 18
92 125.43 temperature 15.0 1440 > th dose independent rect. 7 12
94 125.48 temperature 10.0 90 > th dose dependent rect. 8 21
101 125.79 humidity 70.0 720 > th dose independent rect. 19 7
105 125.83 radiation 1.0 720 < th dose dependent rect. 5 19
107 125.85 humidity 70.0 90 > th dose dependent rect. 5 22
114 126.07 humidity 90.0 720 < th dose independent rect. 2 10
115 126.08 humidity 90.0 270 < th dose independent sin 0 NA
117 126.11 radiation 1.0 720 < th dose independent rect. 19 23
130 126.41 humidity 70.0 720 > th dose independent rect. 19 12
134 126.49 wind 7.0 720 < th dose independent rect. 11 6
137 126.57 humidity 90.0 720 < th dose independent rect. 7 5
141 126.63 temperature 10.0 720 > th dose dependent rect. 17 2
159 126.98 atmosphere 1015.0 720 < th dose independent rect. 24 14
161 126.98 humidity 80.0 270 > th dose dependent rect. 3 11
188 127.55 radiation 1.0 720 < th dose dependent rect. 23 17
189 127.55 radiation 1.0 720 < th dose dependent rect. 20 22
208 127.80 wind 5.0 90 < th dose independent rect. 19 10
224 128.03 temperature 15.0 720 > th dose independent rect. 5 2
239 128.10 humidity 60.0 14400 > th dose independent rect. 21 10
259 128.18 radiation 1.0 720 > th dose independent sin 22 NA
261 128.21 temperature 15.0 1440 > th dose independent rect. 6 10
267 128.28 radiation 1.0 720 > th dose independent rect. 13 23
272 128.34 wind 5.0 90 < th dose independent rect. 15 14
274 128.34 radiation 1.0 720 < th dose independent rect. 23 16
276 128.35 humidity 90.0 10 < th dose independent rect. 7 11
288 128.38 atmosphere 1015.0 720 < th dose independent rect. 24 11
293 128.42 humidity 90.0 270 < th dose independent rect. 3 14
294 128.42 radiation 1.0 720 < th dose independent rect. 1 23
295 128.43 temperature 15.0 720 > th dose independent rect. 19 22
301 128.49 humidity 60.0 14400 > th dose independent rect. 23 8
303 128.52 atmosphere 1015.0 720 < th dose independent rect. 24 9
305 128.52 humidity 80.0 270 > th dose independent rect. 2 12
310 128.58 wind 7.0 10 < th dose independent rect. 7 11
314 128.60 humidity 80.0 270 > th dose dependent sin 4 NA
335 128.74 humidity 80.0 270 > th dose independent sin 4 NA
342 128.77 wind 7.0 720 < th dose independent rect. 17 2
353 128.86 humidity 50.0 720 > th dose dependent rect. 19 5
357 128.88 wind 5.0 90 < th dose independent rect. 23 6
375 128.94 humidity 50.0 720 > th dose dependent rect. 19 12
376 128.96 radiation 1.0 90 > th dose independent sin 5 NA
393 129.05 radiation 1.0 720 < th dose independent sin 5 NA
401 129.08 radiation 1.0 720 < th dose dependent sin 5 NA
404 129.09 atmosphere 1015.0 720 < th dose independent sin 4 NA
406 129.11 atmosphere 1015.0 720 < th dose independent sin 2 NA
419 129.16 humidity 80.0 270 > th dose dependent rect. 3 21
420 129.17 wind 7.0 90 < th dose independent rect. 7 22
421 129.17 humidity 60.0 720 > th dose dependent rect. 19 18
446 129.33 wind 7.0 90 < th dose independent rect. 7 10
447 129.33 temperature 10.0 90 > th dose dependent rect. 23 6
450 129.36 wind 7.0 720 < th dose independent rect. 5 20
452 129.38 temperature 15.0 90 > th dose independent rect. 7 22
454 129.38 temperature 10.0 90 > th dose dependent rect. 19 10
464 129.43 wind 5.0 720 < th dose independent rect. 7 12
465 129.43 precipitation 0.1 90 < th dose independent rect. 15 14
466 129.43 precipitation 0.1 90 < th dose dependent rect. 15 14
485 129.48 radiation 1.0 720 < th dose independent rect. 13 23
490 129.50 temperature 15.0 720 > th dose independent sin 11 NA
491 129.50 radiation 1.0 720 > th dose independent no NA NA
492 129.50 radiation 1.0 720 < th dose independent no NA NA
541 129.52 radiation 1.0 720 < th dose dependent rect. 1 23
542 129.53 temperature 15.0 1440 > th dose independent sin 21 NA
552 129.56 temperature 15.0 90 > th dose independent sin 1 NA
568 129.63 temperature 10.0 720 > th dose dependent rect. 17 11
572 129.64 radiation 1.0 720 < th dose independent rect. 8 23
573 129.65 radiation 20.0 14400 < th dose independent rect. 21 9
579 129.66 temperature 15.0 90 > th dose independent rect. 5 18
582 129.67 temperature 10.0 720 > th dose dependent rect. 16 13
585 129.68 radiation 1.0 90 < th dose independent rect. 23 8
586 129.68 wind 7.0 90 < th dose independent rect. 7 12
587 129.68 radiation 1.0 90 < th dose independent rect. 23 12
598 129.71 radiation 1.0 90 < th dose dependent rect. 23 12
600 129.72 wind 9.0 90 < th dose dependent rect. 15 14
615 129.76 radiation 1.0 90 < th dose dependent rect. 23 9
627 129.79 wind 9.0 90 < th dose dependent rect. 18 11
632 129.82 radiation 20.0 90 < th dose independent rect. 5 3
652 129.90 wind 1.0 720 > th dose independent rect. 17 2
667 129.96 temperature 15.0 90 > th dose independent rect. 5 22
669 129.97 humidity 80.0 90 > th dose independent rect. 5 4
674 129.99 radiation 1.0 720 < th dose independent rect. 17 8
687 130.04 temperature 15.0 90 > th dose independent sin 17 NA
688 130.04 radiation 40.0 720 < th dose dependent rect. 5 2
699 130.07 wind 7.0 90 < th dose independent rect. 5 22
718 130.13 radiation 1.0 720 < th dose independent rect. 1 14
719 130.13 wind 9.0 90 < th dose dependent rect. 23 6
729 130.18 radiation 40.0 90 < th dose dependent rect. 15 14
747 130.22 temperature 15.0 90 > th dose independent rect. 5 10
748 130.23 wind 7.0 90 < th dose independent rect. 5 18
756 130.25 radiation 20.0 90 < th dose dependent rect. 5 4
772 130.30 wind 7.0 10 < th dose independent sin 0 NA
818 130.45 precipitation 0.1 90 < th dose independent rect. 19 10
821 130.45 precipitation 0.1 90 < th dose dependent rect. 19 10
832 130.48 humidity 60.0 720 > th dose dependent sin 7 NA
834 130.49 wind 5.0 720 < th dose independent rect. 9 9
835 130.49 temperature 10.0 720 > th dose dependent rect. 17 8
847 130.53 humidity 50.0 720 > th dose dependent rect. 5 2
850 130.54 wind 7.0 10 < th dose independent rect. 6 14
857 130.55 precipitation 0.1 90 < th dose independent rect. 5 10
858 130.55 atmosphere 1015.0 720 < th dose independent rect. 7 20
859 130.55 precipitation 0.1 90 < th dose dependent rect. 5 10
876 130.59 wind 7.0 720 < th dose independent sin 22 NA
882 130.60 precipitation 0.1 720 < th dose independent rect. 17 10
886 130.60 precipitation 0.1 720 < th dose dependent rect. 17 10
896 130.63 temperature 30.0 720 < th dose independent rect. 16 15
904 130.64 wind 9.0 720 < th dose dependent rect. 11 6
912 130.65 humidity 70.0 90 > th dose dependent rect. 5 4
922 130.67 radiation 1.0 720 < th dose dependent rect. 13 23
927 130.69 humidity 90.0 10 < th dose independent sin 22 NA
929 130.69 radiation 1.0 90 < th dose independent rect. 19 12
932 130.70 radiation 1.0 720 < th dose dependent no NA NA
947 130.74 radiation 1.0 720 < th dose dependent rect. 17 23
952 130.75 radiation 1.0 90 < th dose dependent rect. 19 13
957 130.76 wind 7.0 720 < th dose independent rect. 7 5
969 130.79 humidity 80.0 90 > th dose independent rect. 5 2
973 130.80 wind 7.0 10 < th dose independent rect. 6 16
983 130.82 wind 7.0 720 < th dose dependent rect. 7 12