Os01g0759900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Permease 1.
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Os01g0759900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Permease 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 135.29 | 0.547 | 8.44 | 0.0335 | 1.17 | -2.8 | 1.49 | -0.235 | -0.211 | 16.8 | 14.88 | 101 | -- | -- |
| 135.28 | 0.542 | 8.43 | 0.0534 | 1.17 | -2.8 | 1.45 | -- | -0.207 | 16.8 | 14.84 | 108 | -- | -- |
| 139.91 | 0.551 | 8.42 | 0.18 | 1.17 | -2.81 | -- | 0.822 | -0.176 | 16.9 | 11.64 | 112 | -- | -- |
| 140.56 | 0.552 | 8.43 | 0.0626 | 1.17 | -2.8 | -- | -- | -0.207 | 16.9 | 13.55 | 112 | -- | -- |
| 189.97 | 0.645 | 8.44 | -0.0955 | -- | -1.73 | -- | 0.872 | -0.344 | -- | 10.61 | 62 | -- | -- |
| 216.38 | 0.69 | 8.52 | -0.501 | 0.538 | -- | 0.695 | -- | -0.597 | 19 | -- | -- | -- | -- |
| 217.58 | 0.691 | 8.52 | -0.516 | 0.539 | -- | -- | -- | -0.596 | 19.2 | -- | -- | -- | -- |
| 190.61 | 0.646 | 8.45 | -0.216 | -- | -1.71 | -- | -- | -0.377 | -- | 13.18 | 49 | -- | -- |
| 140.64 | 0.552 | 8.43 | -- | 1.16 | -2.78 | -- | -- | -0.217 | 16.9 | 13.23 | 112 | -- | -- |
| 232.95 | 0.713 | 8.5 | -0.525 | -- | -- | -- | -- | -0.605 | -- | -- | -- | -- | -- |
| 224.59 | 0.701 | 8.5 | -- | 0.544 | -- | -- | -- | -0.539 | 19.2 | -- | -- | -- | -- |
| 191.52 | 0.647 | 8.44 | -- | -- | -1.8 | -- | -- | -0.345 | -- | 2.274 | 2 | -- | -- |
| 240.22 | 0.723 | 8.49 | -- | -- | -- | -- | -- | -0.547 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 122.14 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 26 | 129.79 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 22 |
| 32 | 130.52 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 33 | 130.62 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 20 |
| 44 | 132.06 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 64 | 133.94 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 22 |
| 84 | 135.49 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 89 | 135.83 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 94 | 135.94 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 119 | 136.93 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 164 | 139.43 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 13 |
| 192 | 140.15 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 12 |
| 247 | 140.94 | temperature | 30 | 1440 | < th | dose dependent | sin | 7 | NA |
| 295 | 141.57 | temperature | 10 | 1440 | > th | dose dependent | sin | 8 | NA |
| 347 | 142.03 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 457 | 142.83 | temperature | 25 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 466 | 142.88 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 470 | 142.92 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 524 | 143.18 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 6 |
| 567 | 143.46 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 687 | 143.89 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 21 |