Os03g0823800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Permease 1.
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Os03g0823800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Permease 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 182.31 | 0.634 | 2.97 | -0.209 | 0.0916 | -1.32 | 0.133 | 1.51 | -0.235 | 4.05 | 17.71 | 1721 | -- | -- |
| 183.38 | 0.631 | 2.99 | -0.162 | 0.108 | -1.45 | 0.18 | -- | -0.252 | 4.38 | 17.37 | 1748 | -- | -- |
| 182.34 | 0.629 | 2.97 | -0.208 | 0.0954 | -1.33 | -- | 1.51 | -0.236 | 4.39 | 20.92 | 1727 | -- | -- |
| 183.47 | 0.631 | 3 | -0.176 | 0.11 | -1.46 | -- | -- | -0.263 | 4.68 | 26.58 | 1748 | -- | -- |
| 182.81 | 0.63 | 2.97 | -0.216 | -- | -1.28 | -- | 1.61 | -0.23 | -- | 22.91 | 1725 | -- | -- |
| 199.7 | 0.662 | 2.98 | -0.51 | 0.0998 | -- | -0.0912 | -- | -0.191 | 23 | -- | -- | -- | -- |
| 199.73 | 0.662 | 2.98 | -0.506 | 0.1 | -- | -- | -- | -0.191 | 23.2 | -- | -- | -- | -- |
| 184.1 | 0.632 | 3 | -0.18 | -- | -1.42 | -- | -- | -0.257 | -- | 27.8 | 1729 | -- | -- |
| 184.17 | 0.632 | 2.99 | -- | 0.116 | -1.56 | -- | -- | -0.247 | 5.03 | 24.65 | 1748 | -- | -- |
| 200.36 | 0.661 | 2.98 | -0.504 | -- | -- | -- | -- | -0.19 | -- | -- | -- | -- | -- |
| 206.49 | 0.672 | 2.97 | -- | 0.0957 | -- | -- | -- | -0.135 | 22.8 | -- | -- | -- | -- |
| 184.83 | 0.633 | 2.99 | -- | -- | -1.53 | -- | -- | -0.245 | -- | 27.31 | 1729 | -- | -- |
| 207.06 | 0.672 | 2.97 | -- | -- | -- | -- | -- | -0.135 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 168.66 | wind | 5 | 270 | > th | dose independent | rect. | 6 | 1 |
| 2 | 169.12 | wind | 5 | 270 | > th | dose dependent | rect. | 6 | 1 |
| 11 | 172.93 | wind | 7 | 30 | > th | dose independent | rect. | 2 | 9 |
| 23 | 174.36 | wind | 5 | 30 | > th | dose dependent | rect. | 4 | 7 |
| 28 | 174.42 | wind | 5 | 30 | > th | dose dependent | rect. | 2 | 9 |
| 62 | 176.47 | wind | 7 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 63 | 176.48 | wind | 7 | 1440 | > th | dose independent | rect. | 1 | 2 |
| 81 | 177.01 | wind | 5 | 720 | > th | dose independent | rect. | 21 | 11 |
| 87 | 177.13 | wind | 5 | 30 | > th | dose dependent | rect. | 22 | 13 |
| 89 | 177.18 | wind | 7 | 1440 | > th | dose dependent | rect. | 1 | 7 |
| 103 | 177.62 | wind | 5 | 720 | < th | dose independent | rect. | 20 | 12 |
| 115 | 177.75 | wind | 7 | 720 | > th | dose dependent | rect. | 22 | 12 |
| 117 | 177.83 | wind | 5 | 720 | > th | dose dependent | rect. | 22 | 10 |
| 167 | 178.61 | wind | 5 | 1440 | < th | dose independent | rect. | 2 | 2 |
| 193 | 178.95 | wind | 5 | 720 | > th | dose independent | sin | 10 | NA |
| 195 | 178.99 | wind | 5 | 720 | < th | dose independent | sin | 10 | NA |
| 203 | 179.09 | wind | 5 | 1440 | > th | dose dependent | sin | 10 | NA |
| 226 | 179.28 | wind | 5 | 720 | < th | dose independent | rect. | 1 | 7 |
| 245 | 179.40 | wind | 5 | 1440 | > th | dose dependent | rect. | 19 | 15 |
| 259 | 179.49 | wind | 5 | 1440 | > th | dose dependent | rect. | 17 | 16 |
| 281 | 179.61 | wind | 7 | 1440 | < th | dose independent | rect. | 17 | 17 |
| 291 | 179.67 | wind | 5 | 1440 | > th | dose independent | rect. | 17 | 15 |
| 293 | 179.67 | humidity | 90 | 90 | > th | dose dependent | rect. | 8 | 2 |
| 310 | 179.75 | wind | 5 | 10 | > th | dose independent | rect. | 10 | 1 |
| 315 | 179.75 | wind | 5 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 326 | 179.79 | wind | 5 | 90 | > th | dose dependent | rect. | 2 | 2 |
| 372 | 179.98 | wind | 7 | 720 | < th | dose dependent | rect. | 2 | 6 |
| 377 | 180.01 | wind | 5 | 90 | > th | dose independent | rect. | 2 | 2 |
| 424 | 180.19 | wind | 9 | 90 | > th | dose dependent | rect. | 19 | 15 |
| 503 | 180.41 | humidity | 90 | 90 | > th | dose independent | rect. | 8 | 1 |
| 878 | 181.41 | wind | 9 | 1440 | < th | dose dependent | rect. | 16 | 17 |
| 972 | 181.64 | wind | 9 | 1440 | < th | dose dependent | sin | 10 | NA |