Os12g0583900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Permease.
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Os12g0583900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Permease.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.5 | 0.377 | 11.1 | 0.347 | 2.66 | 0.807 | 0.936 | -0.0538 | 0.539 | 18.9 | 18.16 | 15 | -- | -- |
| 64.52 | 0.374 | 11.1 | 0.348 | 2.66 | 0.81 | 0.91 | -- | 0.54 | 18.9 | 18.03 | 14 | -- | -- |
| 66.5 | 0.38 | 11.1 | 0.335 | 2.66 | 0.813 | -- | 0.171 | 0.543 | 18.9 | 17.42 | 14 | -- | -- |
| 66.65 | 0.38 | 11.1 | 0.332 | 2.66 | 0.814 | -- | -- | 0.541 | 18.9 | 18.28 | 14 | -- | -- |
| 388 | 0.922 | 11 | 0.253 | -- | 1.3 | -- | 0.263 | 0.503 | -- | 6.9 | 6 | -- | -- |
| 75.69 | 0.408 | 11.1 | 0.331 | 2.98 | -- | 0.867 | -- | 0.51 | 20 | -- | -- | -- | -- |
| 77.91 | 0.413 | 11.1 | 0.308 | 2.98 | -- | -- | -- | 0.511 | 20 | -- | -- | -- | -- |
| 388.39 | 0.922 | 11 | 0.253 | -- | 1.3 | -- | -- | 0.504 | -- | 6.77 | 6 | -- | -- |
| 69.55 | 0.388 | 11.1 | -- | 2.66 | 0.805 | -- | -- | 0.507 | 18.9 | 17.17 | 14 | -- | -- |
| 561.98 | 1.11 | 11 | 0.277 | -- | -- | -- | -- | 0.472 | -- | -- | -- | -- | -- |
| 80.4 | 0.419 | 11.1 | -- | 2.98 | -- | -- | -- | 0.477 | 20 | -- | -- | -- | -- |
| 390.04 | 0.923 | 11 | -- | -- | 1.3 | -- | -- | 0.478 | -- | 6.58 | 4 | -- | -- |
| 564.01 | 1.11 | 11 | -- | -- | -- | -- | -- | 0.442 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.43 | radiation | 20.0 | 30 | < th | dose dependent | sin | 5 | NA |
| 11 | 56.79 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 24 | 16 |
| 33 | 57.84 | humidity | 70.0 | 10 | > th | dose dependent | sin | 5 | NA |
| 35 | 57.87 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 24 | 15 |
| 65 | 58.64 | radiation | 1.0 | 270 | < th | dose independent | rect. | 22 | 17 |
| 77 | 58.84 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 9 |
| 90 | 58.87 | radiation | 1.0 | 90 | > th | dose dependent | sin | 9 | NA |
| 106 | 59.18 | radiation | 10.0 | 90 | > th | dose independent | sin | 6 | NA |
| 111 | 59.23 | humidity | 90.0 | 10 | < th | dose independent | rect. | 6 | 7 |
| 123 | 59.34 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 13 | 17 |
| 135 | 59.47 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 22 | 8 |
| 156 | 59.60 | humidity | 80.0 | 10 | > th | dose independent | rect. | 24 | 16 |
| 170 | 59.69 | radiation | 1.0 | 270 | > th | dose independent | sin | 9 | NA |
| 171 | 59.69 | radiation | 1.0 | 90 | < th | dose independent | sin | 4 | NA |
| 173 | 59.70 | humidity | 90.0 | 30 | < th | dose independent | rect. | 2 | 11 |
| 197 | 59.94 | radiation | 1.0 | 270 | < th | dose independent | sin | 9 | NA |
| 244 | 60.18 | humidity | 90.0 | 10 | < th | dose dependent | sin | 7 | NA |
| 265 | 60.29 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 11 | 18 |
| 474 | 61.15 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 22 | 18 |
| 541 | 61.48 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 4 | 7 |
| 606 | 61.69 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 19 | 16 |
| 633 | 61.77 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 13 | 17 |
| 711 | 62.00 | radiation | 40.0 | 10 | < th | dose independent | rect. | 12 | 18 |
| 731 | 62.08 | wind | 9.0 | 270 | < th | dose dependent | rect. | 5 | 6 |
| 736 | 62.10 | radiation | 10.0 | 30 | < th | dose independent | rect. | 24 | 17 |
| 781 | 62.18 | wind | 9.0 | 10 | < th | dose dependent | rect. | 6 | 7 |
| 799 | 62.24 | temperature | 20.0 | 30 | > th | dose independent | rect. | 6 | 7 |
| 805 | 62.25 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 24 | 9 |
| 813 | 62.30 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 24 | 10 |
| 817 | 62.32 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 16 |
| 893 | 62.50 | temperature | 15.0 | 270 | > th | dose independent | rect. | 5 | 6 |
| 949 | 62.60 | humidity | 80.0 | 10 | > th | dose independent | sin | 5 | NA |
| 953 | 62.60 | humidity | 90.0 | 30 | < th | dose independent | rect. | 19 | 18 |
| 957 | 62.62 | humidity | 90.0 | 30 | < th | dose independent | sin | 4 | NA |
| 969 | 62.64 | humidity | 80.0 | 10 | < th | dose independent | rect. | 22 | 15 |
| 972 | 62.65 | wind | 5.0 | 270 | < th | dose independent | rect. | 5 | 6 |
| 978 | 62.66 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 6 | 7 |
| 998 | 62.72 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 19 | 16 |