BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0819500 Os01g0819500|AK058360
(47 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0819400 Similar to Ubiquitin-conjugating enzyme (EC 6.... 100 2e-22
Os01g0819500 Similar to Ubiquitin-conjugating enzyme E2-17 ... 100 3e-22
Os04g0667800 Ubiquitin-conjugating enzyme (EC 6.3.2.19) (Ub... 97 3e-21
Os02g0261100 Ubiquitin-conjugating enzyme OsUBC5b 97 3e-21
Os06g0506600 Similar to Ubiquitin-conjugating enzyme E2-17 ... 96 5e-21
Os01g0658400 Ubiquitin-conjugating enzyme OsUBC5a 91 2e-19
Os02g0120600 Similar to Ubiquitin-conjugating enzyme E2-17 ... 90 4e-19
Os09g0293400 Similar to Ubiquitin-conjugating enzyme (EC 6.... 88 1e-18
D17786 71 2e-13
>Os01g0819400 Similar to Ubiquitin-conjugating enzyme (EC 6.3.2.19) (Ubiquitin
carrier protein)
Length = 148
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/47 (100%), Positives = 47/47 (100%)
Query: 1 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYETTARSWTQKYAMG 47
VLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYETTARSWTQKYAMG
Sbjct: 102 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYETTARSWTQKYAMG 148
>Os01g0819500 Similar to Ubiquitin-conjugating enzyme E2-17 kDa 11 (EC
6.3.2.19) (Ubiquitin- protein ligase 11) (Ubiquitin
carrier protein 11)
Length = 47
Score = 100 bits (249), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/47 (100%), Positives = 47/47 (100%)
Query: 1 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYETTARSWTQKYAMG 47
VLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYETTARSWTQKYAMG
Sbjct: 1 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYETTARSWTQKYAMG 47
>Os04g0667800 Ubiquitin-conjugating enzyme (EC 6.3.2.19) (Ubiquitin carrier
protein)
Length = 148
Score = 97.1 bits (240), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/47 (95%), Positives = 46/47 (97%)
Query: 1 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYETTARSWTQKYAMG 47
VLLSICSLLTDPNPDDPLVPEIAHMYKTDR KYE+TARSWTQKYAMG
Sbjct: 102 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148
>Os02g0261100 Ubiquitin-conjugating enzyme OsUBC5b
Length = 148
Score = 97.1 bits (240), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/47 (95%), Positives = 46/47 (97%)
Query: 1 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYETTARSWTQKYAMG 47
VLLSICSLLTDPNPDDPLVPEIAHMYKTDR KYE+TARSWTQKYAMG
Sbjct: 102 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148
>Os06g0506600 Similar to Ubiquitin-conjugating enzyme E2-17 kDa 8 (EC 6.3.2.19)
(Ubiquitin- protein ligase 8) (Ubiquitin carrier
protein 8) (UBCAT4A)
Length = 51
Score = 95.9 bits (237), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 44/47 (93%), Positives = 45/47 (95%)
Query: 1 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYETTARSWTQKYAMG 47
VLLSICSLLTDPNPDDPLVPEIAHMYKTDR KYE+TAR WTQKYAMG
Sbjct: 5 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARGWTQKYAMG 51
>Os01g0658400 Ubiquitin-conjugating enzyme OsUBC5a
Length = 147
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/46 (91%), Positives = 44/46 (95%)
Query: 1 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYETTARSWTQKYAM 46
VLLSICSLLTDPNPDDPLVPEIAHMYKTDR KYE TAR+WTQ+YAM
Sbjct: 102 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRHKYENTARTWTQRYAM 147
>Os02g0120600 Similar to Ubiquitin-conjugating enzyme E2-17 kDa 9 (EC 6.3.2.19)
(Ubiquitin- protein ligase 9) (Ubiquitin carrier protein
9) (UBCAT4B)
Length = 148
Score = 90.1 bits (222), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/47 (89%), Positives = 44/47 (93%)
Query: 1 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYETTARSWTQKYAMG 47
VLLSICSLLTDPNPDDPLVPEIAHM KTDR +YE+TAR WTQKYAMG
Sbjct: 102 VLLSICSLLTDPNPDDPLVPEIAHMCKTDRLRYESTARGWTQKYAMG 148
>Os09g0293400 Similar to Ubiquitin-conjugating enzyme (EC 6.3.2.19) (Ubiquitin
carrier protein)
Length = 148
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/47 (85%), Positives = 44/47 (93%)
Query: 1 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYETTARSWTQKYAMG 47
VLLSI SLLTDPNPDDPLVPEIAH+YK+ RP+YE TAR+WTQKYAMG
Sbjct: 102 VLLSISSLLTDPNPDDPLVPEIAHVYKSQRPRYEETARAWTQKYAMG 148
>D17786
Length = 103
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/37 (91%), Positives = 34/37 (91%)
Query: 1 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRPKYETTA 37
VLLSICSLLTDPN DDPLVPEIAHMYKTDR KYE TA
Sbjct: 67 VLLSICSLLTDPNGDDPLVPEIAHMYKTDRAKYEFTA 103
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,949,328
Number of extensions: 53450
Number of successful extensions: 184
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 9
Length of query: 47
Length of database: 17,035,801
Length adjustment: 20
Effective length of query: 27
Effective length of database: 15,991,521
Effective search space: 431771067
Effective search space used: 431771067
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)