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Os06g0506600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ubiquitin-conjugating enzyme E2-17 kDa 8 (EC 6.3.2.19) (Ubiquitin- protein ligase 8) (Ubiquitin carrier protein 8) (UBCAT4A).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14.1 (0.0243) R2 : 0.378
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.962 (0.0586) R2dC : 0.37 R2C : 0.365
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.143 (0.051) R2dN8 : 0.0138 R2N8 : 0.00866
σ : 0.457
deviance : 95.62
__
_____
C
peak time of C : 10.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
73.71 0.403 14.1 0.582 0.536 -0.679 -0.793 -0.947 0.163 6.82 5.931 95 -- --
75.83 0.406 14.1 0.546 0.72 -1 -1.16 -- 0.137 4.41 3.195 132 -- --
75.06 0.404 14.1 0.57 0.585 -0.752 -- -0.823 0.157 6.23 3.67 115 -- --
78.79 0.413 14.1 0.554 0.571 -0.809 -- -- 0.153 5.77 3.6 111 -- --
85.23 0.432 14.1 0.579 -- -0.753 -- -0.564 0.19 -- 7.441 55 -- --
84.97 0.432 14.1 0.558 0.966 -- 0.656 -- 0.207 10.6 -- -- -- --
86.66 0.436 14.1 0.583 0.966 -- -- -- 0.208 10.5 -- -- -- --
86.75 0.436 14.1 0.592 -- -0.759 -- -- 0.193 -- 8.02 38 -- --
86.79 0.434 14.1 -- 0.597 -0.822 -- -- 0.0942 5.6 3.03 116 -- --
143.78 0.56 14.1 0.567 -- -- -- -- 0.204 -- -- -- -- --
95.62 0.457 14.1 -- 0.962 -- -- -- 0.143 10.4 -- -- -- --
95.96 0.458 14.1 -- -- -0.754 -- -- 0.128 -- 8.092 23 -- --
152.24 0.576 14.1 -- -- -- -- -- 0.141 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 60.38 temperature 25.0 30 > th dose independent rect. 6 5
4 61.59 temperature 15.0 90 > th dose dependent rect. 5 6
11 62.92 wind 3.0 30 < th dose independent rect. 6 5
14 63.23 wind 5.0 30 < th dose dependent rect. 6 5
21 63.74 radiation 10.0 90 < th dose dependent sin 8 NA
31 64.30 radiation 1.0 90 > th dose independent rect. 4 7
46 64.48 wind 5.0 30 < th dose dependent rect. 6 7
57 65.09 radiation 1.0 90 > th dose independent sin 6 NA
60 65.22 atmosphere 1015.0 90 < th dose independent rect. 11 18
68 65.47 precipitation 0.1 90 < th dose independent rect. 11 18
69 65.47 precipitation 0.1 90 < th dose dependent rect. 11 18
73 65.59 temperature 30.0 10 < th dose independent rect. 11 19
76 65.65 humidity 90.0 30 < th dose independent rect. 6 5
83 65.79 precipitation 0.1 90 < th dose independent rect. 5 6
85 65.79 precipitation 0.1 90 < th dose dependent rect. 5 6
86 65.81 atmosphere 995.0 30 > th dose dependent rect. 6 5
88 65.88 temperature 10.0 90 > th dose independent rect. 5 6
89 65.88 atmosphere 995.0 90 > th dose independent rect. 5 6
90 65.88 atmosphere 1015.0 90 < th dose independent rect. 5 6
91 65.88 temperature 10.0 90 > th dose independent rect. 11 18
101 65.97 humidity 50.0 90 > th dose independent rect. 5 6
102 65.97 wind 9.0 90 < th dose independent rect. 11 18
111 66.21 temperature 10.0 1440 > th dose independent rect. 7 5
114 66.21 atmosphere 995.0 1440 > th dose independent rect. 7 5
115 66.21 temperature 10.0 1440 > th dose independent rect. 12 19
118 66.22 atmosphere 995.0 90 > th dose independent rect. 11 18
125 66.28 humidity 50.0 30 > th dose independent rect. 11 19
140 66.40 temperature 25.0 270 > th dose independent rect. 5 3
141 66.43 radiation 1.0 90 < th dose independent sin 6 NA
167 66.67 temperature 20.0 270 > th dose dependent rect. 6 1
183 66.85 temperature 15.0 270 > th dose dependent rect. 5 3
195 67.00 wind 1.0 10 > th dose independent rect. 6 5
200 67.07 temperature 30.0 30 < th dose independent rect. 6 5
209 67.15 wind 1.0 90 > th dose independent rect. 5 6
212 67.21 temperature 25.0 270 > th dose dependent rect. 5 3
286 67.79 wind 3.0 30 < th dose independent rect. 6 13
293 67.92 temperature 10.0 10 > th dose dependent rect. 6 18
302 68.09 temperature 10.0 90 > th dose dependent rect. 11 18
303 68.10 radiation 1.0 270 < th dose independent sin 10 NA
308 68.14 radiation 1.0 270 > th dose independent rect. 5 3
322 68.18 wind 5.0 30 < th dose dependent rect. 6 12
326 68.22 wind 9.0 30 < th dose dependent rect. 14 16
346 68.33 temperature 30.0 30 < th dose independent rect. 14 16
374 68.54 radiation 1.0 270 > th dose independent rect. 6 1
397 68.69 radiation 10.0 90 < th dose dependent rect. 1 14
416 68.78 temperature 10.0 10 > th dose dependent rect. 6 20
417 68.79 wind 3.0 270 < th dose independent rect. 6 1
418 68.79 radiation 40.0 30 < th dose independent rect. 6 5
431 68.92 wind 9.0 10 < th dose dependent rect. 24 6
432 68.94 humidity 50.0 10 > th dose independent rect. 14 16
440 68.98 temperature 10.0 10 > th dose dependent rect. 6 8
470 69.13 precipitation 0.1 270 < th dose independent rect. 9 20
472 69.13 precipitation 0.1 270 < th dose dependent rect. 9 20
473 69.16 precipitation 0.1 10 < th dose independent rect. 2 4
474 69.16 precipitation 0.1 10 < th dose dependent rect. 2 4
481 69.21 atmosphere 1015.0 1440 < th dose independent rect. 3 4
483 69.21 wind 7.0 30 < th dose dependent rect. 19 11
492 69.28 wind 7.0 270 < th dose dependent rect. 6 1
506 69.33 radiation 40.0 10 < th dose dependent rect. 12 18
526 69.38 wind 5.0 10 < th dose independent rect. 24 6
527 69.38 atmosphere 1010.0 10 < th dose independent rect. 24 6
530 69.38 radiation 40.0 10 < th dose dependent rect. 2 4
531 69.39 wind 7.0 10 < th dose independent rect. 2 4
532 69.39 radiation 10.0 10 < th dose independent rect. 2 4
537 69.40 temperature 10.0 10 > th dose independent rect. 2 4
539 69.40 temperature 30.0 10 < th dose independent rect. 2 4
540 69.40 humidity 50.0 10 > th dose independent rect. 2 4
543 69.40 atmosphere 995.0 10 > th dose independent rect. 2 4
544 69.40 atmosphere 1010.0 10 < th dose independent rect. 2 4
552 69.40 temperature 10.0 10 > th dose independent rect. 6 20
555 69.42 precipitation 0.1 10 < th dose independent rect. 24 6
559 69.42 precipitation 0.1 10 < th dose dependent rect. 24 6
562 69.43 radiation 10.0 10 < th dose independent rect. 24 6
573 69.44 temperature 10.0 270 > th dose independent rect. 9 20
574 69.45 radiation 30.0 1440 < th dose independent rect. 3 4
575 69.45 temperature 15.0 10 > th dose independent rect. 24 6
578 69.45 atmosphere 995.0 270 > th dose dependent rect. 6 1
584 69.48 temperature 30.0 10 < th dose independent rect. 24 6
585 69.48 humidity 50.0 10 > th dose independent rect. 24 6
588 69.48 atmosphere 995.0 10 > th dose independent rect. 24 6
594 69.48 temperature 10.0 10 > th dose independent rect. 6 18
596 69.50 humidity 70.0 1440 > th dose independent rect. 3 4
597 69.50 wind 9.0 270 < th dose independent rect. 9 20
621 69.54 radiation 30.0 1440 < th dose independent rect. 1 6
624 69.55 wind 9.0 10 < th dose dependent rect. 2 4
630 69.57 wind 9.0 10 < th dose independent rect. 6 20
644 69.60 temperature 25.0 10 > th dose dependent sin 8 NA
649 69.62 radiation 20.0 270 < th dose independent rect. 6 1
669 69.63 humidity 50.0 10 > th dose dependent rect. 24 6
677 69.65 wind 9.0 10 < th dose independent rect. 6 18
686 69.67 humidity 90.0 10 < th dose independent rect. 6 8
700 69.68 radiation 40.0 10 < th dose dependent rect. 24 6
722 69.73 atmosphere 995.0 270 > th dose dependent rect. 5 3
731 69.76 radiation 1.0 90 < th dose independent rect. 1 15
738 69.77 temperature 30.0 270 < th dose independent rect. 5 3
743 69.77 wind 9.0 1440 < th dose independent rect. 3 4
744 69.77 temperature 10.0 1440 > th dose independent rect. 3 4
747 69.77 temperature 30.0 1440 < th dose independent rect. 3 4
751 69.77 humidity 50.0 1440 > th dose independent rect. 3 4
756 69.77 atmosphere 995.0 1440 > th dose independent rect. 3 4
761 69.77 temperature 10.0 1440 > th dose independent rect. 7 20
770 69.79 precipitation 0.1 270 < th dose independent rect. 6 1
771 69.79 precipitation 0.1 270 < th dose dependent rect. 6 1
777 69.80 temperature 10.0 270 > th dose independent rect. 6 1
779 69.80 temperature 30.0 270 < th dose independent rect. 6 1
780 69.80 humidity 50.0 270 > th dose independent rect. 6 1
782 69.80 atmosphere 995.0 270 > th dose independent rect. 6 1
783 69.80 atmosphere 1015.0 270 < th dose independent rect. 6 1
784 69.80 radiation 40.0 270 < th dose independent rect. 6 1
788 69.80 temperature 10.0 270 > th dose independent rect. 7 23
792 69.81 temperature 10.0 1440 > th dose independent rect. 1 6
795 69.81 temperature 30.0 1440 < th dose independent rect. 1 6
799 69.81 humidity 50.0 1440 > th dose independent rect. 1 6
804 69.81 atmosphere 995.0 1440 > th dose independent rect. 1 6
809 69.81 temperature 10.0 1440 > th dose independent rect. 7 18
829 69.86 humidity 50.0 10 > th dose dependent rect. 2 4
832 69.86 humidity 50.0 10 > th dose dependent rect. 13 17
837 69.87 wind 9.0 30 < th dose dependent rect. 6 18
847 69.91 humidity 80.0 270 > th dose independent rect. 6 1
849 69.91 temperature 30.0 30 < th dose independent rect. 11 6
863 69.96 radiation 40.0 270 < th dose independent rect. 5 3
875 70.00 precipitation 0.1 270 < th dose independent rect. 7 23
877 70.00 precipitation 0.1 270 < th dose dependent rect. 7 23
888 70.04 radiation 1.0 90 < th dose independent rect. 1 10
928 70.15 atmosphere 1015.0 1440 < th dose independent rect. 1 6
944 70.19 radiation 40.0 90 < th dose independent rect. 11 18
950 70.22 wind 1.0 10 > th dose independent rect. 17 18
974 70.27 radiation 10.0 30 < th dose dependent rect. 2 6
978 70.28 precipitation 0.1 10 < th dose independent rect. 6 18
981 70.28 precipitation 0.1 10 < th dose dependent rect. 6 18