BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0506600 Os06g0506600|AK066232
(51 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G64230.4 | chr1:23833792-23835220 FORWARD LENGTH=191 100 2e-22
AT5G41700.4 | chr5:16676072-16677223 FORWARD LENGTH=150 99 5e-22
AT3G08690.1 | chr3:2641487-2642489 FORWARD LENGTH=149 99 5e-22
AT5G53300.1 | chr5:21632802-21633989 REVERSE LENGTH=149 97 2e-21
AT4G27960.2 | chr4:13916065-13917293 REVERSE LENGTH=179 96 4e-21
AT5G56150.1 | chr5:22729756-22730964 FORWARD LENGTH=149 95 8e-21
AT3G08700.1 | chr3:2643482-2644545 FORWARD LENGTH=150 91 2e-19
AT2G16740.1 | chr2:7267880-7268737 FORWARD LENGTH=149 88 8e-19
AT1G16890.3 | chr1:5776550-5778327 REVERSE LENGTH=163 52 9e-08
AT1G78870.1 | chr1:29650589-29652203 FORWARD LENGTH=155 51 1e-07
AT2G32790.1 | chr2:13905649-13906271 REVERSE LENGTH=178 49 4e-07
AT1G36340.1 | chr1:13683791-13684924 REVERSE LENGTH=155 45 9e-06
>AT1G64230.4 | chr1:23833792-23835220 FORWARD LENGTH=191
Length = 190
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/48 (95%), Positives = 47/48 (97%)
Query: 4 QVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARGWTQKYAMG 51
+VLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTAR WTQKYAMG
Sbjct: 143 KVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 190
>AT5G41700.4 | chr5:16676072-16677223 FORWARD LENGTH=150
Length = 149
Score = 99.0 bits (245), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 45/48 (93%), Positives = 47/48 (97%)
Query: 4 QVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARGWTQKYAMG 51
+VLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE+TAR WTQKYAMG
Sbjct: 102 KVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARNWTQKYAMG 149
>AT3G08690.1 | chr3:2641487-2642489 FORWARD LENGTH=149
Length = 148
Score = 98.6 bits (244), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 45/48 (93%), Positives = 47/48 (97%)
Query: 4 QVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARGWTQKYAMG 51
+VLLSICSLLTDPNPDDPLVPEIAHMYKTDR+KYESTAR WTQKYAMG
Sbjct: 101 KVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYESTARSWTQKYAMG 148
>AT5G53300.1 | chr5:21632802-21633989 REVERSE LENGTH=149
Length = 148
Score = 96.7 bits (239), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/48 (91%), Positives = 46/48 (95%)
Query: 4 QVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARGWTQKYAMG 51
+VLLSICSLLTDPNPDDPLVPEIAHMYKTD+ KYESTAR WTQKYAMG
Sbjct: 101 KVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARSWTQKYAMG 148
>AT4G27960.2 | chr4:13916065-13917293 REVERSE LENGTH=179
Length = 178
Score = 95.9 bits (237), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 44/48 (91%), Positives = 46/48 (95%)
Query: 4 QVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARGWTQKYAMG 51
+VLLSICSLLTDPNPDDPLVPEIAHMYKTD+ KYESTAR WTQKYAMG
Sbjct: 131 KVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARTWTQKYAMG 178
>AT5G56150.1 | chr5:22729756-22730964 FORWARD LENGTH=149
Length = 148
Score = 94.7 bits (234), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 43/48 (89%), Positives = 46/48 (95%)
Query: 4 QVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARGWTQKYAMG 51
+VLLSICSLLTDPNPDDPLVPEIAH+YKTDR KYESTA+ WTQKYAMG
Sbjct: 101 KVLLSICSLLTDPNPDDPLVPEIAHIYKTDRVKYESTAQSWTQKYAMG 148
>AT3G08700.1 | chr3:2643482-2644545 FORWARD LENGTH=150
Length = 149
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/48 (83%), Positives = 46/48 (95%)
Query: 4 QVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARGWTQKYAMG 51
+VLLSICSLLTDPNP+DPLVPEIAH+YK D++KYESTA+ WTQKYAMG
Sbjct: 102 KVLLSICSLLTDPNPNDPLVPEIAHLYKVDKSKYESTAQKWTQKYAMG 149
>AT2G16740.1 | chr2:7267880-7268737 FORWARD LENGTH=149
Length = 148
Score = 88.2 bits (217), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 39/47 (82%), Positives = 44/47 (93%)
Query: 4 QVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARGWTQKYAM 50
+VLLSICSLLTDPNPDDPLVPEIAH+YKTD+ KYE+ AR WTQKYA+
Sbjct: 101 KVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKYEAMARSWTQKYAL 147
>AT1G16890.3 | chr1:5776550-5778327 REVERSE LENGTH=163
Length = 162
Score = 51.6 bits (122), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 5 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARGWTQKYAMG 51
VLLSI +LL+ PNPDDPL IA +K++ A+ TA+ WT+ YA G
Sbjct: 115 VLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWTRLYASG 161
>AT1G78870.1 | chr1:29650589-29652203 FORWARD LENGTH=155
Length = 154
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 5 VLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARGWTQKYAMG 51
VLLSI +LL+ PNPDDPL IA +K++ A+ TA+ WT+ YA G
Sbjct: 107 VLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVDTAKEWTRLYASG 153
>AT2G32790.1 | chr2:13905649-13906271 REVERSE LENGTH=178
Length = 177
Score = 49.3 bits (116), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/49 (53%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 5 VLLSICSLLTDPNPDDPLV--PEIAHMYKTDRAKYESTARGWTQKYAMG 51
VLLSICS+L+ NP +PL+ A +Y+ DR YE AR WT KYA G
Sbjct: 131 VLLSICSILS--NPVEPLLVSNHAARLYQKDRKAYEKVAREWTLKYAKG 177
>AT1G36340.1 | chr1:13683791-13684924 REVERSE LENGTH=155
Length = 154
Score = 44.7 bits (104), Expect = 9e-06, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 16 PNPDDPLVPEIAHMYKTDRAKYESTARGWTQKYA 49
PNPDDPLVPEI ++K +R +++ AR +T ++A
Sbjct: 119 PNPDDPLVPEIGQLFKNNRFQFDQRAREFTARHA 152
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.133 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,231,951
Number of extensions: 34894
Number of successful extensions: 115
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 12
Length of query: 51
Length of database: 11,106,569
Length adjustment: 25
Effective length of query: 26
Effective length of database: 10,421,169
Effective search space: 270950394
Effective search space used: 270950394
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)