BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0708400 Os01g0708400|016-070-D09
(85 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0708400 Similar to Casein kinase I (Fragment) 177 1e-45
Os01g0570500 Similar to Dual specificity kinase 1 90 4e-19
Os05g0593800 Similar to Dual specificity kinase 1 89 6e-19
Os02g0810400 Similar to Dual specificity kinase 1 89 7e-19
Os04g0514800 Similar to Dual specificity kinase 1 89 7e-19
Os02g0622100 Similar to Dual specificity kinase 1 89 8e-19
Os01g0231500 Similar to Casein kinase I (Fragment) 87 2e-18
Os10g0476300 Similar to Dual specificity kinase 1 85 9e-18
Os02g0280400 Similar to Dual specificity kinase 1 85 1e-17
AK110592 84 3e-17
>Os01g0708400 Similar to Casein kinase I (Fragment)
Length = 85
Score = 177 bits (450), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 85/85 (100%), Positives = 85/85 (100%)
Query: 1 CCRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGRWVLLVYPFVYPFMYN 60
CCRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGRWVLLVYPFVYPFMYN
Sbjct: 1 CCRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGRWVLLVYPFVYPFMYN 60
Query: 61 ASIFTLFSLQSSLAGSESRNKETKV 85
ASIFTLFSLQSSLAGSESRNKETKV
Sbjct: 61 ASIFTLFSLQSSLAGSESRNKETKV 85
>Os01g0570500 Similar to Dual specificity kinase 1
Length = 472
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/42 (100%), Positives = 42/42 (100%)
Query: 3 RENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRG 44
RENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRG
Sbjct: 168 RENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRG 209
>Os05g0593800 Similar to Dual specificity kinase 1
Length = 473
Score = 89.4 bits (220), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 41/42 (97%), Positives = 42/42 (100%)
Query: 3 RENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRG 44
RENKNLTGTARYASVNTHLGIEQSRRDD+ESLGYVLMYFLRG
Sbjct: 168 RENKNLTGTARYASVNTHLGIEQSRRDDMESLGYVLMYFLRG 209
>Os02g0810400 Similar to Dual specificity kinase 1
Length = 462
Score = 89.0 bits (219), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 41/42 (97%), Positives = 42/42 (100%)
Query: 3 RENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRG 44
RENKNLTGTARYASVNTHLG+EQSRRDDLESLGYVLMYFLRG
Sbjct: 168 RENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRG 209
>Os04g0514800 Similar to Dual specificity kinase 1
Length = 454
Score = 89.0 bits (219), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 41/42 (97%), Positives = 42/42 (100%)
Query: 3 RENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRG 44
RENKNLTGTARYASVNTHLG+EQSRRDDLESLGYVLMYFLRG
Sbjct: 168 RENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRG 209
>Os02g0622100 Similar to Dual specificity kinase 1
Length = 463
Score = 89.0 bits (219), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/42 (97%), Positives = 42/42 (100%)
Query: 3 RENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRG 44
RENKNLTGTARYASVNTHLG+EQSRRDDLESLGYVLMYFLRG
Sbjct: 168 RENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRG 209
>Os01g0231500 Similar to Casein kinase I (Fragment)
Length = 430
Score = 87.4 bits (215), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/42 (92%), Positives = 41/42 (97%)
Query: 3 RENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRG 44
RENKNLTGTARYAS NTHLG+EQSRRDDLESLGYVL+YFLRG
Sbjct: 168 RENKNLTGTARYASCNTHLGVEQSRRDDLESLGYVLLYFLRG 209
>Os10g0476300 Similar to Dual specificity kinase 1
Length = 475
Score = 85.1 bits (209), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 39/42 (92%), Positives = 42/42 (100%)
Query: 3 RENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRG 44
RENKNLTGTARYASVNTHLGIEQSRRDDLES+GY+L+YFLRG
Sbjct: 168 RENKNLTGTARYASVNTHLGIEQSRRDDLESVGYLLLYFLRG 209
>Os02g0280400 Similar to Dual specificity kinase 1
Length = 416
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/42 (92%), Positives = 41/42 (97%)
Query: 3 RENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRG 44
RENKNLTGTARYAS NTHLGIEQSRRDDLES+GYVL+YFLRG
Sbjct: 168 RENKNLTGTARYASCNTHLGIEQSRRDDLESIGYVLLYFLRG 209
>AK110592
Length = 371
Score = 83.6 bits (205), Expect = 3e-17, Method: Composition-based stats.
Identities = 36/42 (85%), Positives = 41/42 (97%)
Query: 3 RENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRG 44
RENKNLTGTARYAS+NTHLG+EQSRRDD+ESLGYV++YF RG
Sbjct: 171 RENKNLTGTARYASINTHLGVEQSRRDDMESLGYVMLYFCRG 212
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.136 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,323,112
Number of extensions: 65874
Number of successful extensions: 160
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 10
Length of query: 85
Length of database: 17,035,801
Length adjustment: 55
Effective length of query: 30
Effective length of database: 14,164,031
Effective search space: 424920930
Effective search space used: 424920930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 149 (62.0 bits)