FiT-DB / Search/ Help/ Sample detail

Os01g0708400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Casein kinase I (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.8 (0.0125) R2 : 0.596
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.845 (0.0327) R2dC : 0.593 R2C : 0.585
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0822 (0.0263) R2dN8 : 0.0112 R2N8 : 0.00279
σ : 0.235
deviance : 25.3
__
_____
C
peak time of C : 17.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
19.16 0.206 11.8 -0.164 0.877 0.624 -0.0752 0.00537 0.118 18.3 0.7482 1358 -- --
19.15 0.204 11.8 -0.16 0.881 0.632 -0.0807 -- 0.118 18.3 0.6103 1353 -- --
19.16 0.204 11.8 -0.157 0.885 0.651 -- 0.059 0.116 18.4 0.5705 1348 -- --
19.16 0.204 11.8 -0.16 0.885 0.643 -- -- 0.115 18.4 0.6 1348 -- --
56.3 0.349 11.8 -0.221 -- 0.558 -- 0.142 0.083 -- 0.9978 1432 -- --
22.86 0.224 11.8 -0.304 0.84 -- -0.0566 -- 0.0485 17.8 -- -- -- --
22.87 0.224 11.8 -0.304 0.84 -- -- -- 0.0483 17.8 -- -- -- --
56.29 0.349 11.8 -0.209 -- 0.538 -- -- 0.0793 -- 1.029 1434 -- --
19.75 0.207 11.8 -- 0.9 0.737 -- -- 0.139 18.5 0.4856 1343 -- --
59.45 0.36 11.8 -0.33 -- -- -- -- 0.0287 -- -- -- -- --
25.3 0.235 11.8 -- 0.845 -- -- -- 0.0822 17.8 -- -- -- --
57.16 0.352 11.8 -- -- 0.624 -- -- 0.11 -- 0.8001 1432 -- --
62.32 0.368 11.8 -- -- -- -- -- 0.0653 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 16.57 temperature 10.0 90 > th dose dependent rect. 17 20
7 17.21 temperature 15.0 90 > th dose independent rect. 17 20
24 17.49 temperature 15.0 270 > th dose independent rect. 15 22
33 17.60 temperature 15.0 270 > th dose independent rect. 17 18
48 17.82 temperature 15.0 90 > th dose dependent rect. 3 10
49 17.82 temperature 15.0 10 > th dose dependent rect. 20 17
68 18.01 temperature 15.0 270 > th dose independent rect. 7 14
72 18.07 temperature 15.0 90 > th dose dependent rect. 5 8
86 18.15 temperature 10.0 90 > th dose dependent rect. 8 15
89 18.16 temperature 20.0 10 > th dose dependent rect. 3 10
102 18.22 radiation 1.0 270 < th dose independent rect. 21 19
123 18.33 radiation 1.0 270 > th dose independent rect. 16 21
137 18.39 radiation 1.0 270 > th dose independent rect. 17 18
140 18.40 humidity 80.0 30 < th dose independent rect. 17 21
146 18.41 temperature 10.0 10 > th dose dependent rect. 8 16
150 18.43 temperature 20.0 10 > th dose dependent rect. 7 6
154 18.45 temperature 10.0 270 > th dose dependent rect. 6 16
156 18.45 radiation 1.0 270 < th dose dependent rect. 21 19
157 18.46 humidity 80.0 30 < th dose independent rect. 7 7
158 18.46 humidity 70.0 10 > th dose dependent rect. 23 18
171 18.50 temperature 30.0 90 < th dose independent rect. 13 4
175 18.51 temperature 15.0 10 > th dose independent rect. 17 21
240 18.64 wind 9.0 90 < th dose independent rect. 13 4
242 18.64 atmosphere 995.0 90 > th dose independent rect. 17 20
251 18.66 humidity 50.0 90 > th dose independent rect. 17 20
252 18.66 precipitation 0.1 90 < th dose independent rect. 17 20
256 18.66 precipitation 0.1 90 < th dose dependent rect. 17 20
262 18.68 wind 1.0 90 > th dose independent rect. 13 4
282 18.71 humidity 80.0 30 < th dose independent rect. 20 18
298 18.74 temperature 10.0 90 > th dose independent rect. 13 4
300 18.74 atmosphere 1010.0 90 < th dose independent rect. 13 4
319 18.77 radiation 20.0 270 < th dose dependent rect. 21 10
327 18.79 precipitation 0.1 90 < th dose independent rect. 13 4
330 18.79 precipitation 0.1 90 < th dose dependent rect. 13 4
339 18.81 humidity 80.0 90 > th dose independent rect. 23 17
340 18.81 atmosphere 995.0 90 > th dose dependent rect. 13 4
347 18.82 wind 9.0 90 < th dose independent rect. 17 20
357 18.84 precipitation 0.1 270 < th dose independent rect. 17 18
361 18.84 precipitation 0.1 270 < th dose dependent rect. 17 18
365 18.85 temperature 15.0 270 > th dose dependent rect. 8 2
369 18.86 atmosphere 995.0 270 > th dose independent rect. 17 18
382 18.88 precipitation 0.1 270 < th dose independent rect. 15 22
387 18.88 precipitation 0.1 270 < th dose dependent rect. 15 22
388 18.89 wind 9.0 270 < th dose independent rect. 11 6
394 18.91 radiation 40.0 90 < th dose independent rect. 13 4
399 18.92 humidity 50.0 90 > th dose independent rect. 13 4
404 18.93 atmosphere 995.0 90 > th dose independent rect. 13 4
416 18.94 atmosphere 995.0 270 > th dose independent rect. 15 22
428 18.95 temperature 30.0 90 < th dose dependent rect. 23 18
429 18.96 wind 7.0 270 < th dose independent rect. 13 1
458 18.99 radiation 1.0 270 > th dose independent rect. 4 7
473 19.00 radiation 40.0 10 < th dose independent rect. 12 5
474 19.00 wind 1.0 270 > th dose independent rect. 11 6
476 19.00 radiation 10.0 270 < th dose independent rect. 21 10
490 19.02 humidity 50.0 90 > th dose dependent rect. 13 4
506 19.04 temperature 10.0 270 > th dose independent rect. 11 6
507 19.04 atmosphere 1015.0 270 < th dose independent rect. 11 6
520 19.05 wind 1.0 270 > th dose independent rect. 13 2
521 19.05 temperature 10.0 270 > th dose independent rect. 13 2
523 19.05 atmosphere 1010.0 270 < th dose independent rect. 13 2
526 19.05 temperature 15.0 270 > th dose independent rect. 16 7
533 19.05 radiation 30.0 90 < th dose dependent rect. 23 10
549 19.08 precipitation 0.1 270 < th dose independent rect. 11 6
554 19.08 precipitation 0.1 270 < th dose dependent rect. 11 6
579 19.09 radiation 30.0 90 < th dose dependent rect. 23 18
581 19.10 wind 9.0 270 < th dose independent rect. 17 18
582 19.10 atmosphere 995.0 270 > th dose dependent rect. 13 1
592 19.11 wind 1.0 90 > th dose dependent rect. 13 4
597 19.12 precipitation 0.1 270 < th dose independent rect. 13 2
600 19.12 humidity 50.0 270 > th dose independent rect. 17 18
603 19.12 precipitation 0.1 270 < th dose dependent rect. 13 2
629 19.15 atmosphere 995.0 270 > th dose independent rect. 13 1
647 19.17 humidity 90.0 90 < th dose independent rect. 13 4
648 19.17 temperature 20.0 90 > th dose independent rect. 7 6
651 19.17 temperature 30.0 10 < th dose independent rect. 24 17
653 19.17 atmosphere 1010.0 90 < th dose independent rect. 17 20
702 19.21 temperature 30.0 10 < th dose dependent rect. 23 18
767 19.26 humidity 70.0 270 > th dose independent rect. 21 10
807 19.29 humidity 50.0 270 > th dose independent rect. 13 2
828 19.30 atmosphere 995.0 270 > th dose independent rect. 7 14
844 19.31 wind 9.0 270 < th dose independent rect. 21 10
854 19.32 humidity 50.0 10 > th dose independent rect. 14 3
863 19.32 radiation 10.0 43200 < th dose dependent rect. 19 6
866 19.33 temperature 15.0 270 > th dose independent rect. 17 5
867 19.33 temperature 10.0 270 > th dose independent rect. 21 10
868 19.33 temperature 30.0 270 < th dose independent rect. 21 10
869 19.33 humidity 50.0 270 > th dose independent rect. 21 10
871 19.33 atmosphere 995.0 270 > th dose independent rect. 21 10
885 19.34 humidity 90.0 270 < th dose independent rect. 13 2
912 19.35 precipitation 0.1 270 < th dose independent rect. 7 14
915 19.35 precipitation 0.1 10 < th dose independent rect. 17 21
916 19.35 atmosphere 995.0 10 > th dose dependent rect. 14 3
922 19.35 precipitation 0.1 270 < th dose dependent rect. 7 14
925 19.35 precipitation 0.1 10 < th dose dependent rect. 17 21
942 19.36 radiation 1.0 720 < th dose dependent rect. 5 20
967 19.38 atmosphere 995.0 10 > th dose independent rect. 17 21
985 19.39 humidity 50.0 10 > th dose dependent rect. 13 4
988 19.39 humidity 50.0 90 > th dose dependent rect. 23 10