BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0693400 Os01g0693400|J065109K09
(393 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0693400 Transcriptional factor B3 family protein 608 e-174
Os05g0549800 Transcriptional factor B3 family protein 405 e-113
Os01g0140700 268 6e-72
Os01g0141000 Similar to RAV-like protein 260 1e-69
Os02g0683500 Similar to DNA-binding protein RAV1 164 7e-41
Os04g0581400 Transcriptional factor B3 family protein 164 1e-40
Os03g0120900 Similar to AP2 domain containing protein RAP2.... 159 3e-39
Os10g0537100 148 6e-36
Os11g0156000 Similar to AP2 domain containing protein RAP2.... 146 2e-35
Os08g0157700 134 1e-31
Os07g0273700 Transcriptional factor B3 family protein 111 1e-24
Os02g0455800 Transcriptional factor B3 family protein 80 3e-15
Os02g0455900 73 5e-13
>Os01g0693400 Transcriptional factor B3 family protein
Length = 393
Score = 608 bits (1567), Expect = e-174, Method: Compositional matrix adjust.
Identities = 319/393 (81%), Positives = 319/393 (81%)
Query: 1 MDSSSCLVDDTNSGGSSTDKLRXXXXXXXXXXPLERMGSGASAVVDAAEPGAEADSXXXX 60
MDSSSCLVDDTNSGGSSTDKLR PLERMGSGASAVVDAAEPGAEADS
Sbjct: 1 MDSSSCLVDDTNSGGSSTDKLRALAAAAAETAPLERMGSGASAVVDAAEPGAEADSGSGG 60
Query: 61 XXXXXXXXXXXXXXXKLPSSKFKGVVPQPNGRWGAQIYERHQRVWLGTFAGEDDAARAYD 120
KLPSSKFKGVVPQPNGRWGAQIYERHQRVWLGTFAGEDDAARAYD
Sbjct: 61 RVCGGGGGGAGGAGGKLPSSKFKGVVPQPNGRWGAQIYERHQRVWLGTFAGEDDAARAYD 120
Query: 121 VAAQRFRGRDAVTNFXXXXXXXXXXXXXXXFLATRSKAEVVDMLRKHTYFDELAQSKRXX 180
VAAQRFRGRDAVTNF FLATRSKAEVVDMLRKHTYFDELAQSKR
Sbjct: 121 VAAQRFRGRDAVTNFRPLAEADPDAAAELRFLATRSKAEVVDMLRKHTYFDELAQSKRTF 180
Query: 181 XXXXXXXXXXXXXXXNGHLXXXXXXXXXXXXXDHLFDKTVTPSDVGKLNRLVIPKQHAEK 240
NGHL DHLFDKTVTPSDVGKLNRLVIPKQHAEK
Sbjct: 181 AASTPSAATTTASLSNGHLSSPRSPFAPAAARDHLFDKTVTPSDVGKLNRLVIPKQHAEK 240
Query: 241 HFPLQLPSAGGESKGVLLNFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGD 300
HFPLQLPSAGGESKGVLLNFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGD
Sbjct: 241 HFPLQLPSAGGESKGVLLNFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGD 300
Query: 301 VVGFYRSAASAGDDGKLFIDCKLVRSTGAALASPADQPAPSPVKAVRLFGVDLLTAPAPV 360
VVGFYRSAASAGDDGKLFIDCKLVRSTGAALASPADQPAPSPVKAVRLFGVDLLTAPAPV
Sbjct: 301 VVGFYRSAASAGDDGKLFIDCKLVRSTGAALASPADQPAPSPVKAVRLFGVDLLTAPAPV 360
Query: 361 EQMAGCKRARDLAATTPPQAAAFKKQCIELALV 393
EQMAGCKRARDLAATTPPQAAAFKKQCIELALV
Sbjct: 361 EQMAGCKRARDLAATTPPQAAAFKKQCIELALV 393
>Os05g0549800 Transcriptional factor B3 family protein
Length = 394
Score = 405 bits (1041), Expect = e-113, Method: Compositional matrix adjust.
Identities = 241/420 (57%), Positives = 262/420 (62%), Gaps = 53/420 (12%)
Query: 1 MDSSSCLVDDTNSGGSSTDKLRXXXXXXXXXXPLERMGSGASAVVDAAEPGAEADSXXXX 60
MDS+SCL+DD +SG S+ K L+R+GSGASAV+DAAEPGAEADS
Sbjct: 1 MDSTSCLLDDASSGASTGKKAAAAAASKA----LQRVGSGASAVMDAAEPGAEADSGGER 56
Query: 61 XXXXXXXXXXXXXXXKLPSSKFKGVVPQPNGRWGAQIYERHQRVWLGTFAGEDDAARAYD 120
KLPSSK+KGVVPQPNGRWGAQIYERHQRVWLGTF GE +AARAYD
Sbjct: 57 RGGGGG---------KLPSSKYKGVVPQPNGRWGAQIYERHQRVWLGTFTGEAEAARAYD 107
Query: 121 VAAQRFRGRDAVTNFXXXXXXXXXXXXXXXFLATRSKAEVVDMLRKHTYFDELAQSKRXX 180
VAAQRFRGRDAVTNF FLA+RSKAEVVDMLRKHTY +EL Q+KR
Sbjct: 108 VAAQRFRGRDAVTNFRPLAESDPEAAVELRFLASRSKAEVVDMLRKHTYLEELTQNKRAF 167
Query: 181 XXXXXXXXXXXXXXXNGHLXXXXXXXXXXXXXDHLFDKTVTPSDVGKLNRLVIPKQHAEK 240
+HLFDKTVTPSDVGKLNRLVIPKQHAEK
Sbjct: 168 AAISPPPPKHPASSPT----------SSSAAREHLFDKTVTPSDVGKLNRLVIPKQHAEK 217
Query: 241 HFPLQLPSAGGES---------------KGVLLNFEDAAGKVWRFRYSYWNSSQSYVLTK 285
HFPLQLP S KGVLLNFEDAAGKVW+FRYSYWNSSQSYVLTK
Sbjct: 218 HFPLQLPPPTTTSSVAAAADAAAGGGDCKGVLLNFEDAAGKVWKFRYSYWNSSQSYVLTK 277
Query: 286 GWSRFVKEKGLHAGDVVGFYRSAASAGDDGKLFIDCKL-------VRSTGAALASPADQP 338
GWSRFVKEKGLHAGD VGFYR +AG + +LFIDCK+ + A A
Sbjct: 278 GWSRFVKEKGLHAGDAVGFYR---AAGKNAQLFIDCKVRAKPTTAAAAAAFLSAVAAAAA 334
Query: 339 APSPVKAVRLFGVDLLTAPAPVEQMAG----CKRARDLAATTPPQA-AAFKKQCIELALV 393
P VKA+RLFGVDLLTA AP Q AG K R + A QA FKKQCIELAL
Sbjct: 335 PPPAVKAIRLFGVDLLTAAAPELQDAGGAAMTKSKRAMDAMAESQAHVVFKKQCIELALT 394
>Os01g0140700
Length = 317
Score = 268 bits (684), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 161/278 (57%), Positives = 174/278 (62%), Gaps = 31/278 (11%)
Query: 78 PSSKFKGVVPQPNGRWGAQIYERHQRVWLGTFAGEDDAARAYDVAAQRFRGRDAVTNFXX 137
PSS++KGVVPQPNGRWGAQIYERH RVWLGTF E+ AARAYDVAA RFRGRDAVTN
Sbjct: 63 PSSRYKGVVPQPNGRWGAQIYERHARVWLGTFPDEEAAARAYDVAALRFRGRDAVTN--R 120
Query: 138 XXXXXXXXXXXXXFLATRSKAEVVDMLRKHTYFDELAQSKRXXXXXXXXXXXXXXXXXNG 197
FLA SKAEVVDMLRKHTY DEL Q R
Sbjct: 121 APAAEGASAGELAFLAAHSKAEVVDMLRKHTYDDELQQGLRRGSRAQPTPRWAR------ 174
Query: 198 HLXXXXXXXXXXXXXDHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQL--PSAGGESKG 255
+ LF+K VTPSDVGKLNRLV+PKQ AE+HFP L S+ KG
Sbjct: 175 ---------------EPLFEKAVTPSDVGKLNRLVVPKQQAERHFPFPLRRHSSDAAGKG 219
Query: 256 VLLNFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDVVGFYRSAASAGDDG 315
VLLNFED GKVWRFRYSYWNSSQSYVLTKGWSRFV+EKGL GD V F RSAA+ G +
Sbjct: 220 VLLNFEDGDGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRPGDTVAFSRSAAAWGTEK 279
Query: 316 KLFIDCKLVRSTGAALASPADQPAPSPVKAVRLFGVDL 353
L IDCK + A D A VK LFGVD+
Sbjct: 280 HLLIDCKKMERNNLAT---VDDDARVVVK---LFGVDI 311
>Os01g0141000 Similar to RAV-like protein
Length = 365
Score = 260 bits (665), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 167/317 (52%), Positives = 186/317 (58%), Gaps = 41/317 (12%)
Query: 81 KFKGVVPQPNGRWGAQIYERHQRVWLGTFAGEDDAARAYDVAAQRFRGRDAVTNFXXXXX 140
++KGVVPQPNGRWGAQIYERH RVWLGTF E+ AARAYDVAA R+RGRDA TNF
Sbjct: 68 RYKGVVPQPNGRWGAQIYERHARVWLGTFPDEEAAARAYDVAALRYRGRDAATNFPGAAA 127
Query: 141 XXXXXXXXXXFLATRSKAEVVDMLRKHTYFDELAQSKRXXXXXXXXXXXXXXXXXNGHLX 200
A SKAE+VDMLRKHTY DEL Q R G
Sbjct: 128 SAAELAFL----AAHSKAEIVDMLRKHTYADELRQGLR-----------------RGRGM 166
Query: 201 XXXXXXXXXXXXDHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQ------LPSAGGESK 254
+ LF+K VTPSDVGKLNRLV+PKQHAEKHFPL+ SA K
Sbjct: 167 GARAQPTPSWAREPLFEKAVTPSDVGKLNRLVVPKQHAEKHFPLRRAASSDSASAAATGK 226
Query: 255 GVLLNFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDVVGFYRSAASAGDD 314
GVLLNFED GKVWRFRYSYWNSSQSYVLTKGWSRFV+EKGL AGD + F RSA G D
Sbjct: 227 GVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGDTIVFSRSA--YGPD 284
Query: 315 GKLFIDCKLVRSTGAALASPADQ-PAPSPV--KAVRLFGVDLLTAPAPVEQMAGCKRARD 371
LFIDCK + A D+ P S + VRLFGVD+ G R R+
Sbjct: 285 KLLFIDCKKNNAAAATTTCAGDERPTTSGAEPRVVRLFGVDI---------AGGDCRKRE 335
Query: 372 LAATTPPQAAAFKKQCI 388
A + K+QC+
Sbjct: 336 RAVEMGQEVFLLKRQCV 352
>Os02g0683500 Similar to DNA-binding protein RAV1
Length = 412
Score = 164 bits (416), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 83/133 (62%), Positives = 92/133 (69%), Gaps = 3/133 (2%)
Query: 213 DHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQLPSAGGESKGVLLNFEDAAGKVWRFRY 272
+H+FDK VTPSDVGKLNRLVIPKQ+AEK+FPL A KG+LLNFED AGK WRFRY
Sbjct: 93 EHMFDKVVTPSDVGKLNRLVIPKQYAEKYFPLD---AAANEKGLLLNFEDRAGKPWRFRY 149
Query: 273 SYWNSSQSYVLTKGWSRFVKEKGLHAGDVVGFYRSAASAGDDGKLFIDCKLVRSTGAALA 332
SYWNSSQSYV+TKGWSRFVKEK L AGD V F R +LFID K T L
Sbjct: 150 SYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFSRGIGDEAARHRLFIDWKRRADTRDPLR 209
Query: 333 SPADQPAPSPVKA 345
P P P P+ +
Sbjct: 210 LPRGLPLPMPLTS 222
>Os04g0581400 Transcriptional factor B3 family protein
Length = 316
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/110 (74%), Positives = 90/110 (81%), Gaps = 4/110 (3%)
Query: 213 DHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQLPSAGGESKGVLLNFEDAAGKVWRFRY 272
+H+FDK VTPSDVGKLNRLVIPKQHAEK+FPL SA E KG+LL+FED GK+WRFRY
Sbjct: 107 EHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLD--SAANE-KGLLLSFEDRTGKLWRFRY 163
Query: 273 SYWNSSQSYVLTKGWSRFVKEKGLHAGDVVGFYRSAASAGDDGKLFIDCK 322
SYWNSSQSYV+TKGWSRFVKEK L AGD V F R AA A D +LFID K
Sbjct: 164 SYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFCRGAAEATRD-RLFIDWK 212
>Os03g0120900 Similar to AP2 domain containing protein RAP2.8 (Fragment)
Length = 311
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 81/125 (64%), Positives = 90/125 (72%), Gaps = 4/125 (3%)
Query: 213 DHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQLPSAGGESKGVLLNFEDAAGKVWRFRY 272
+H+FDK VTPSDVGKLNRLVIPKQHAEK+FPL A KG+LL+FED GK WRFRY
Sbjct: 34 EHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLD---AASNEKGLLLSFEDRTGKPWRFRY 90
Query: 273 SYWNSSQSYVLTKGWSRFVKEKGLHAGDVVGFYRSAASAGDDGKLFIDCKLVRSTGAALA 332
SYWNSSQSYV+TKGWSRFVKEK L AGD V F R A G+LFID + AAL
Sbjct: 91 SYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGVGEAA-RGRLFIDWRRRPDVVAALQ 149
Query: 333 SPADQ 337
P +
Sbjct: 150 PPTHR 154
>Os10g0537100
Length = 312
Score = 148 bits (374), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 77/132 (58%), Positives = 89/132 (67%), Gaps = 11/132 (8%)
Query: 213 DHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPL----------QLPSAGGESKGVLLNFED 262
+H+F+K VTPSDVGKLNRLVIPKQHAE++FPL GG KG++L+FED
Sbjct: 32 EHMFEKVVTPSDVGKLNRLVIPKQHAERYFPLDAAAGAGGGGGGGGGGGGGKGLVLSFED 91
Query: 263 AAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDVVGFYRSAASAGDDGKLFIDCK 322
GK WRFRYSYWNSSQSYV+TKGWSRFVKEK L AGD V F R A G+LFID +
Sbjct: 92 RTGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKRLGAGDTVSFGRGLGDAA-RGRLFIDFR 150
Query: 323 LVRSTGAALASP 334
R + P
Sbjct: 151 RRRQDAGSFMFP 162
>Os11g0156000 Similar to AP2 domain containing protein RAP2.8 (Fragment)
Length = 279
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/108 (66%), Positives = 83/108 (76%), Gaps = 2/108 (1%)
Query: 215 LFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQLPSAGGESKGVLLNFEDAAGKVWRFRYSY 274
+F+K +TPSDVGKLNRLVIPKQHAE++FPL A KG++L+FED AG WRFRYSY
Sbjct: 37 MFEKPLTPSDVGKLNRLVIPKQHAERYFPLGAGDAA--DKGLILSFEDEAGAPWRFRYSY 94
Query: 275 WNSSQSYVLTKGWSRFVKEKGLHAGDVVGFYRSAASAGDDGKLFIDCK 322
W SSQSYVLTKGWSR+VKEK L AGDVV F R S G +LFI C+
Sbjct: 95 WTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRGSFGVGDRLFIGCR 142
>Os08g0157700
Length = 287
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/117 (58%), Positives = 78/117 (66%), Gaps = 12/117 (10%)
Query: 213 DHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQLPSAGGESKGVLLNFEDAAGKVWRFRY 272
+H+FDK VTPSDVGKLNRLV+PKQHAE+ FP + G L FED AG WRFRY
Sbjct: 68 EHMFDKVVTPSDVGKLNRLVVPKQHAERFFP-------AAAAGTQLCFEDRAGTPWRFRY 120
Query: 273 SYWNSSQSYVLTKGWSRFVKEKGLHAGDVVGFYRSAASAGDDGKLFIDCKLVRSTGA 329
SYW SSQSYV+TKGWSRFV+ L AGD V F R+A DG+ FID + G
Sbjct: 121 SYWGSSQSYVMTKGWSRFVRAARLSAGDTVSFSRAA-----DGRYFIDYRHCHRHGG 172
>Os07g0273700 Transcriptional factor B3 family protein
Length = 1450
Score = 111 bits (277), Expect = 1e-24, Method: Composition-based stats.
Identities = 58/110 (52%), Positives = 71/110 (64%), Gaps = 9/110 (8%)
Query: 213 DHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQLPSAGGESKGVLLNFEDAAGKVWRFRY 272
+H+FDK VTPSDVG L RLVIP QHAE +FP +P+ E +GV+L FED AG WRF Y
Sbjct: 71 EHIFDKVVTPSDVGNLGRLVIPWQHAECYFPRDVPA--NEREGVVLRFEDDAGNSWRFLY 128
Query: 273 SYWNSSQSYVLTKGWSRFVKEKGLHAGDVVGFYRSAASAGDDGKLFIDCK 322
+ LT GWS F ++ L AGD+V FYR A+ A D +LFI K
Sbjct: 129 ------RGSSLTLGWSHFFRKNRLDAGDMVSFYRGASEATRD-RLFIHSK 171
>Os02g0455800 Transcriptional factor B3 family protein
Length = 267
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 72/124 (58%), Gaps = 15/124 (12%)
Query: 213 DHLFDKTVTPSDV-GKLNRLVIPKQHAEKHFPLQLPSAGGESKGVLLNFEDAA--GKVWR 269
++LF+K + PSD+ L IP++H K F + L G S ++ F+D GK+W
Sbjct: 26 EYLFEKFLMPSDLCSNTEWLGIPEEHVRK-FGMMLEDRDGYS---VIFFQDGVVPGKLWC 81
Query: 270 FRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDVVGFYRSAASAGDDGKLFIDCKLVRSTGA 329
FRY W S+ + LTKGW FV+EKGL AGD + F+R +A G+LFI C+L T A
Sbjct: 82 FRY--WKSNGVHGLTKGWRCFVREKGLKAGDTISFFRGSAC----GRLFICCRL--GTHA 133
Query: 330 ALAS 333
AS
Sbjct: 134 TFAS 137
>Os02g0455900
Length = 272
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 70/146 (47%), Gaps = 18/146 (12%)
Query: 214 HLFDKTVTPSDVG-KLNRLVIPKQHAEKHFPLQLPS-AGGESKGVLLNFEDAAGKVWRFR 271
+LF K + PSDV +LVIP +H K + + + G V++ + GK+W FR
Sbjct: 27 YLFGKVLMPSDVSWDTEQLVIPDEHVGKLLDMVVMNRPEGGFFVVVVEDGEVTGKLWLFR 86
Query: 272 YSYWNSSQSYVLTKGWSRFVKEKGLHAGDVVGFYRSAASAGDDGKLFIDCKLVRSTGAAL 331
Y W + LTKGW + +EKGL AGD V F+ S A G+ FI C+ + +L
Sbjct: 87 Y--WKRDDVHCLTKGWGCYAREKGLRAGDTVSFFHSTAC----GRFFICCRCTCMSFLSL 140
Query: 332 ASPADQPAPSPVKAVRLFGVDLLTAP 357
P + R+ G +L P
Sbjct: 141 ----------PTTSHRIHGSSVLPQP 156
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,953,595
Number of extensions: 475025
Number of successful extensions: 1698
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 1763
Number of HSP's successfully gapped: 19
Length of query: 393
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 290
Effective length of database: 11,657,759
Effective search space: 3380750110
Effective search space used: 3380750110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)