BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0315300 Os01g0315300|Os01g0315300
(243 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0315300 414 e-116
Os05g0389800 Similar to ATP-dependent helicase DHX8 (RNA he... 125 2e-29
Os02g0301500 Similar to ATP-dependent helicase DHX8 (RNA he... 82 4e-16
Os06g0343100 Similar to ATP-dependent helicase DHX8 (RNA he... 80 2e-15
Os07g0508000 Similar to ADR224Wp 76 2e-14
Os06g0192500 ATP-dependent helicase, DEAH-box family protein 70 2e-12
Os03g0314100 Helicase, C-terminal domain containing protein 70 2e-12
Os01g0212100 ATP-dependent helicase, DEAH-box family protein 67 1e-11
>Os01g0315300
Length = 243
Score = 414 bits (1063), Expect = e-116, Method: Compositional matrix adjust.
Identities = 202/202 (100%), Positives = 202/202 (100%)
Query: 1 MKKTRTMETRQQQHGPDREKLQRANGKVAELVICPIYANLPAELQAKIFEPAPAGARKVV 60
MKKTRTMETRQQQHGPDREKLQRANGKVAELVICPIYANLPAELQAKIFEPAPAGARKVV
Sbjct: 1 MKKTRTMETRQQQHGPDREKLQRANGKVAELVICPIYANLPAELQAKIFEPAPAGARKVV 60
Query: 61 LATNIADAETPYNPRTAMESFLVAPVSRASAEQRACRSGIQVDRDSDTIGAYVCNPATRR 120
LATNIADAETPYNPRTAMESFLVAPVSRASAEQRACRSGIQVDRDSDTIGAYVCNPATRR
Sbjct: 61 LATNIADAETPYNPRTAMESFLVAPVSRASAEQRACRSGIQVDRDSDTIGAYVCNPATRR 120
Query: 121 WASLMQPATPWPRRHDGAFIAFDPAVSQTRRLACGVVGRTPTLDLLILESSSGEDELAPS 180
WASLMQPATPWPRRHDGAFIAFDPAVSQTRRLACGVVGRTPTLDLLILESSSGEDELAPS
Sbjct: 121 WASLMQPATPWPRRHDGAFIAFDPAVSQTRRLACGVVGRTPTLDLLILESSSGEDELAPS 180
Query: 181 PKERTLLLRVFSVGPTLPPPPH 202
PKERTLLLRVFSVGPTLPPPPH
Sbjct: 181 PKERTLLLRVFSVGPTLPPPPH 202
>Os05g0389800 Similar to ATP-dependent helicase DHX8 (RNA helicase HRH1)
(DEAH-box protein 8)
Length = 1070
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/99 (68%), Positives = 71/99 (71%), Gaps = 17/99 (17%)
Query: 18 REKLQRANGKVAELVICPIYANLPAELQAKIFEPAPAGARKVVLATNIADAE-------- 69
R +L+ GKVAELVICPIYANLPAELQAKIFEPAPAGARKVVLATNIA+
Sbjct: 637 RHRLRVLGGKVAELVICPIYANLPAELQAKIFEPAPAGARKVVLATNIAETSLTIDGIKY 696
Query: 70 ---------TPYNPRTAMESFLVAPVSRASAEQRACRSG 99
YNPRT MES LVAPVSRASAEQRA RSG
Sbjct: 697 VVDPGFCKVKSYNPRTGMESLLVAPVSRASAEQRAGRSG 735
>Os02g0301500 Similar to ATP-dependent helicase DHX8 (RNA helicase HRH1)
(DEAH-box protein 8)
Length = 536
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 62/98 (63%), Gaps = 17/98 (17%)
Query: 19 EKLQRANGKVAELVICPIYANLPAELQAKIFEPAPAGARKVVLATNIADAE--------- 69
E+++ V EL+I P+Y+ LP+E+Q+KIF+PAP G RKVV+ATNIA+A
Sbjct: 113 ERMKGLGKDVPELIILPVYSALPSEMQSKIFDPAPPGKRKVVVATNIAEASLTIDGIYYV 172
Query: 70 --------TPYNPRTAMESFLVAPVSRASAEQRACRSG 99
YN + ++S ++ P+S+ASA+QRA R+G
Sbjct: 173 VDPGFAKINVYNSKQGLDSLVITPISQASAKQRAGRAG 210
>Os06g0343100 Similar to ATP-dependent helicase DHX8 (RNA helicase HRH1)
(DEAH-box protein 8)
Length = 1084
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 60/98 (61%), Gaps = 17/98 (17%)
Query: 19 EKLQRANGKVAELVICPIYANLPAELQAKIFEPAPAGARKVVLATNIADAETP------- 71
E+++ V EL+I +Y+ PAE+Q+KIFEP P G RKVV+ATNIA+A
Sbjct: 661 ERMKSLGRNVPELLIYAVYSAQPAEMQSKIFEPTPPGKRKVVVATNIAEASITIDGIYYV 720
Query: 72 ----------YNPRTAMESFLVAPVSRASAEQRACRSG 99
YNP+ ++S ++ P+S+ASA+QRA R+G
Sbjct: 721 IDPGFAKLNVYNPKQGLDSLIITPISQASAKQRAGRAG 758
>Os07g0508000 Similar to ADR224Wp
Length = 1280
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 53/89 (59%), Gaps = 17/89 (19%)
Query: 28 VAELVICPIYANLPAELQAKIFEPAPAGARKVVLATNIADAETP---------------- 71
V +L I PIY+ LPA+LQAKIF+ A G RK ++ATNIA+
Sbjct: 826 VPKLSILPIYSQLPADLQAKIFQKAEEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMK 885
Query: 72 -YNPRTAMESFLVAPVSRASAEQRACRSG 99
YNPR M++ V PVSRA+A+QRA R+G
Sbjct: 886 VYNPRMGMDALQVFPVSRAAADQRAGRAG 914
>Os06g0192500 ATP-dependent helicase, DEAH-box family protein
Length = 386
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 55/107 (51%), Gaps = 27/107 (25%)
Query: 5 RTMETRQQQHGPDREKLQRANGKVAELVICPIYANLPAELQAKIFEPAPAGARKVVLATN 64
R ++ R +Q P R K+ PIY++LP+E Q F+PAPAG RKVVLATN
Sbjct: 289 RLIQERARQLPPQRSKIW----------TTPIYSSLPSEQQMNAFKPAPAGTRKVVLATN 338
Query: 65 IADAET-----------------PYNPRTAMESFLVAPVSRASAEQR 94
IA+ YNP T MES ++ PVS+A A QR
Sbjct: 339 IAETSVTIPGIKYVIDPGMVKARAYNPVTGMESLIIIPVSKAQALQR 385
>Os03g0314100 Helicase, C-terminal domain containing protein
Length = 564
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 24/105 (22%)
Query: 19 EKLQRANGKVAELVICPIYANLPAELQAKIFEPAPA-------GARKVVLATNIADA--- 68
+++ +V + + P+Y+ LP +Q KIFEPAPA RK+V++TNIA+
Sbjct: 296 KEINNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPAPSREGGPAGRKIVVSTNIAETSLT 355
Query: 69 --------------ETPYNPRTAMESFLVAPVSRASAEQRACRSG 99
+ YNPR +ES LV+P+S+ASA QRA R+G
Sbjct: 356 IDGIVYVIDPGFSKQKVYNPRIRVESLLVSPISKASAHQRAGRAG 400
>Os01g0212100 ATP-dependent helicase, DEAH-box family protein
Length = 700
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 54/98 (55%), Gaps = 17/98 (17%)
Query: 19 EKLQRANGKVAELVICPIYANLPAELQAKIFEPAPAGARKVVLATNIADA---------- 68
E++Q +L+I P+Y+ LP Q IF P G RKVV++TNIA+
Sbjct: 300 EEIQHRGRHYLDLLILPLYSGLPRGDQDLIFTPTSKGKRKVVISTNIAETSLTLEGVVYV 359
Query: 69 -------ETPYNPRTAMESFLVAPVSRASAEQRACRSG 99
+ YNP + +ES +VAP+S+ASA QRA R+G
Sbjct: 360 VDSGFSKQKCYNPISDIESLVVAPISKASARQRAGRAG 397
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.132 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,905,738
Number of extensions: 355381
Number of successful extensions: 1080
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1078
Number of HSP's successfully gapped: 8
Length of query: 243
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 145
Effective length of database: 11,918,829
Effective search space: 1728230205
Effective search space used: 1728230205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)