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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0315300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.55 (0.0502) R2 : 0.153
β1 : 0.818 (0.191) R2dD : 0.0384 R2D : -0.019
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.03 (0.229) R2dE : 0.193 R2E : 0.106
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.281 (0.116) R2dN8 : 0.0179 R2N8 : -0.0337
σ : 0.914
deviance : 384.71
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 26.91
memory length : 950
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
368.62 0.902 3.63 0.278 0.0209 2.58 1.71 3.49 0.127 5.27 23.7 1059 -- --
377.87 0.905 3.56 0.771 0.00857 2.01 -1.76 -- 0.232 17.9 30.64 1050 -- --
375.67 0.903 3.63 0.315 0.0246 2.54 -- 3.22 0.123 3.06 23.7 997 -- --
381.55 0.91 3.59 0.745 0.363 2.21 -- -- 0.155 19.1 32.96 731 -- --
375.72 0.903 3.63 0.315 -- 2.53 -- 3.23 0.125 -- 23.69 997 -- --
442.72 0.986 3.65 0.175 0.0271 -- 1.73 -- -0.171 6.33 -- -- -- --
447.32 0.99 3.65 0.203 0.215 -- -- -- -0.173 11.8 -- -- -- --
384.71 0.914 3.55 0.818 -- 2.03 -- -- 0.281 -- 26.91 950 -- --
395.54 0.926 3.62 -- 0.386 1.97 -- -- 0.0376 18.4 33.78 657 -- --
450.23 0.991 3.66 0.197 -- -- -- -- -0.176 -- -- -- -- --
448.41 0.991 3.66 -- 0.213 -- -- -- -0.196 11.7 -- -- -- --
399.09 0.93 3.61 -- -- 1.71 -- -- 0.0219 -- 49.22 881 -- --
451.25 0.992 3.66 -- -- -- -- -- -0.198 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 367.73 temperature 25 1440 < th dose dependent rect. 12 14
5 368.22 temperature 25 1440 < th dose dependent rect. 12 11
26 369.08 temperature 25 1440 < th dose dependent sin 17 NA
86 371.13 temperature 10 720 > th dose dependent rect. 20 22
87 371.18 temperature 25 720 < th dose dependent rect. 3 18
94 371.39 temperature 25 720 < th dose dependent rect. 2 20
137 372.21 temperature 25 1440 < th dose dependent rect. 24 23
139 372.26 temperature 25 1440 < th dose dependent rect. 6 23
141 372.27 temperature 25 1440 < th dose dependent no NA NA
151 372.34 temperature 25 1440 < th dose dependent rect. 20 23
156 372.39 temperature 25 1440 < th dose dependent rect. 3 23
158 372.40 temperature 25 1440 < th dose dependent rect. 17 23
236 373.22 temperature 20 4320 > th dose independent rect. 20 5
239 373.25 temperature 20 4320 < th dose independent rect. 20 5
295 373.72 temperature 15 720 > th dose dependent rect. 17 23
331 373.92 temperature 10 720 > th dose dependent rect. 24 23
344 373.99 temperature 10 720 > th dose dependent rect. 14 19
377 374.19 temperature 15 720 > th dose dependent rect. 13 23
387 374.25 temperature 10 1440 > th dose dependent rect. 22 9
405 374.30 temperature 10 1440 > th dose dependent rect. 17 13
431 374.38 temperature 10 1440 > th dose dependent rect. 22 7
566 374.78 temperature 15 720 > th dose dependent rect. 24 18
568 374.79 temperature 25 1440 < th dose dependent rect. 1 1
581 374.83 temperature 15 1440 > th dose dependent rect. 1 1
584 374.84 temperature 15 1440 > th dose dependent rect. 23 3
617 374.92 temperature 10 720 > th dose dependent no NA NA
618 374.92 temperature 25 4320 < th dose dependent rect. 21 1
642 374.99 temperature 10 1440 > th dose dependent sin 11 NA
658 375.03 temperature 25 1440 < th dose dependent rect. 1 4
695 375.15 temperature 15 720 > th dose dependent rect. 11 23
796 375.48 temperature 20 1440 > th dose independent rect. 19 11
889 375.79 temperature 20 720 < th dose independent rect. 3 19
921 375.93 temperature 20 1440 < th dose independent rect. 19 11
965 376.09 temperature 25 1440 < th dose dependent rect. 6 1