FiT-DB / Search/ Help/ Sample detail

Os03g0314100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Helicase, C-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.3 (0.0118) R2 : 0.118
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.195 (0.0249) R2dN8 : 0.152 R2N8 : 0.118
σ : 0.223
deviance : 22.81
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
10.34 0.151 12.3 0.454 0.316 0.39 0.14 -0.303 0.297 13.6 92.73 328 -- --
10.45 0.151 12.3 0.45 0.317 0.393 0.144 -- 0.295 13.6 92.82 325 -- --
10.42 0.15 12.3 0.459 0.315 0.382 -- -0.334 0.296 13.5 92.72 325 -- --
10.55 0.151 12.3 0.451 0.317 0.388 -- -- 0.293 13.6 92.91 321 -- --
13.43 0.171 12.3 0.423 -- 0.422 -- -0.0491 0.303 -- 81.41 917 -- --
12.04 0.163 12.3 0.467 0.285 -- 0.11 -- 0.25 12.3 -- -- -- --
12.1 0.163 12.3 0.472 0.284 -- -- -- 0.25 12.3 -- -- -- --
13.43 0.171 12.3 0.424 -- 0.408 -- -- 0.301 -- 82.12 927 -- --
15.82 0.185 12.3 -- 0.331 0.406 -- -- 0.257 13.7 92.12 309 -- --
17.17 0.194 12.3 0.462 -- -- -- -- 0.246 -- -- -- -- --
17.96 0.198 12.3 -- 0.278 -- -- -- 0.198 12.2 -- -- -- --
18 0.198 12.3 -- -- 0.471 -- -- 0.27 -- 84.78 946 -- --
22.81 0.223 12.3 -- -- -- -- -- 0.195 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 10.62 humidity 90 720 > th dose dependent rect. 8 18
3 10.65 humidity 90 90 > th dose dependent rect. 4 23
9 10.71 radiation 10 1440 < th dose dependent rect. 9 7
10 10.71 humidity 90 720 > th dose dependent rect. 13 13
15 10.72 humidity 90 720 > th dose independent rect. 20 6
16 10.72 humidity 90 720 > th dose independent rect. 9 17
17 10.72 humidity 90 720 > th dose dependent sin 17 NA
20 10.73 humidity 90 720 > th dose independent rect. 11 15
25 10.74 humidity 90 720 > th dose dependent rect. 20 6
26 10.74 humidity 90 720 > th dose dependent rect. 18 8
33 10.75 humidity 90 270 > th dose dependent rect. 18 22
34 10.75 humidity 90 270 > th dose dependent rect. 1 23
39 10.76 humidity 90 270 > th dose dependent no NA NA
41 10.76 humidity 90 270 > th dose dependent rect. 18 18
49 10.76 humidity 90 270 > th dose dependent rect. 14 22
51 10.76 humidity 90 270 > th dose dependent rect. 10 23
55 10.76 humidity 90 270 > th dose dependent rect. 20 23
63 10.77 humidity 90 90 > th dose dependent rect. 21 15
85 10.78 radiation 10 1440 > th dose independent rect. 10 3
86 10.78 humidity 90 720 > th dose independent rect. 13 13
162 10.80 humidity 80 1440 > th dose dependent rect. 11 5
165 10.80 radiation 10 1440 < th dose dependent rect. 9 10
203 10.81 humidity 90 720 > th dose dependent rect. 21 2
231 10.82 humidity 90 720 > th dose independent sin 16 NA
232 10.82 humidity 90 720 > th dose independent rect. 20 3
256 10.83 temperature 25 90 < th dose dependent rect. 10 4
282 10.84 temperature 25 90 < th dose dependent rect. 11 2
325 10.86 humidity 90 90 > th dose dependent sin 4 NA
329 10.86 humidity 80 1440 > th dose dependent rect. 13 3
358 10.87 humidity 80 1440 > th dose dependent rect. 14 1
360 10.87 radiation 10 1440 < th dose dependent rect. 12 5
462 10.91 radiation 10 1440 < th dose dependent sin 20 NA
478 10.92 humidity 90 720 < th dose independent rect. 10 16
519 10.93 temperature 25 270 < th dose dependent rect. 8 6
532 10.93 radiation 10 1440 < th dose dependent rect. 12 17
537 10.94 wind 1 14400 > th dose independent rect. 2 1
538 10.94 wind 1 4320 < th dose independent rect. 3 2
548 10.94 radiation 10 1440 < th dose dependent rect. 13 1
590 10.95 atmosphere 1005 43200 < th dose independent rect. 21 1
639 10.96 humidity 90 720 < th dose independent rect. 21 1
646 10.96 wind 1 14400 < th dose dependent rect. 2 1
672 10.97 wind 1 4320 > th dose independent rect. 2 3
720 10.97 atmosphere 995 43200 < th dose dependent rect. 14 13
835 10.99 humidity 90 720 < th dose independent sin 17 NA
841 10.99 humidity 80 1440 > th dose independent rect. 10 9
855 10.99 temperature 30 10 < th dose dependent rect. 11 3
861 10.99 humidity 90 90 > th dose dependent rect. 5 7
888 11.00 humidity 80 1440 > th dose independent rect. 13 6
942 11.01 humidity 90 720 > th dose independent rect. 19 21
978 11.02 humidity 90 1440 < th dose independent rect. 11 4
982 11.02 humidity 80 1440 < th dose independent rect. 10 9