Os02g0301500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ATP-dependent helicase DHX8 (RNA helicase HRH1) (DEAH-box protein 8).
FiT-DB / Search/ Help/ Sample detail
|
Os02g0301500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to ATP-dependent helicase DHX8 (RNA helicase HRH1) (DEAH-box protein 8).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.01 | 0.169 | 12.4 | 0.778 | 0.161 | 0.448 | 0.329 | -0.314 | 0.158 | 19.6 | 0.04011 | 1496 | -- | -- |
| 13.08 | 0.168 | 12.4 | 0.778 | 0.149 | 0.516 | 0.332 | -- | 0.161 | 19.1 | 0.05952 | 1507 | -- | -- |
| 13.31 | 0.17 | 12.4 | 0.777 | 0.158 | 0.466 | -- | -0.253 | 0.16 | 19.6 | 0.04002 | 1497 | -- | -- |
| 13.35 | 0.17 | 12.4 | 0.762 | 0.156 | 0.488 | -- | -- | 0.148 | 19.9 | 0.04607 | 1482 | -- | -- |
| 14.62 | 0.178 | 12.4 | 0.771 | -- | 0.477 | -- | -0.258 | 0.163 | -- | 0.11 | 1508 | -- | -- |
| 15.79 | 0.186 | 12.4 | 0.61 | 0.189 | -- | 0.228 | -- | 0.0957 | 20.5 | -- | -- | -- | -- |
| 15.95 | 0.187 | 12.4 | 0.602 | 0.188 | -- | -- | -- | 0.0954 | 20.7 | -- | -- | -- | -- |
| 14.58 | 0.178 | 12.4 | 0.756 | -- | 0.561 | -- | -- | 0.162 | -- | 0.11 | 1511 | -- | -- |
| 24.95 | 0.233 | 12.4 | -- | 0.288 | 0.321 | -- | -- | 0.0725 | 19.7 | 9.06 | 2105 | -- | -- |
| 17.94 | 0.198 | 12.4 | 0.602 | -- | -- | -- | -- | 0.0939 | -- | -- | -- | -- | -- |
| 25.51 | 0.236 | 12.4 | -- | 0.186 | -- | -- | -- | 0.0283 | 20.9 | -- | -- | -- | -- |
| 25.22 | 0.234 | 12.4 | -- | -- | 0.273 | -- | -- | 0.0529 | -- | 9.99 | 36283 | -- | -- |
| 27.5 | 0.245 | 12.4 | -- | -- | -- | -- | -- | 0.0271 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.23 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 14 |
| 2 | 13.24 | radiation | 1 | 1440 | < th | dose dependent | sin | 16 | NA |
| 5 | 13.25 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 7 | 13.26 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 10 |
| 11 | 13.26 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 17 |
| 13 | 13.27 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 37 | 13.30 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 44 | 13.30 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 57 | 13.31 | radiation | 1 | 1440 | > th | dose independent | sin | 16 | NA |
| 59 | 13.31 | radiation | 1 | 1440 | < th | dose independent | sin | 16 | NA |
| 61 | 13.31 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 81 | 13.31 | humidity | 90 | 720 | > th | dose dependent | rect. | 9 | 16 |
| 116 | 13.33 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 132 | 13.34 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 178 | 13.35 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 17 |
| 179 | 13.35 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 17 |
| 180 | 13.35 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 21 |
| 181 | 13.35 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 215 | 13.36 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 261 | 13.38 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 275 | 13.38 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 298 | 13.39 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 446 | 13.47 | radiation | 10 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 452 | 13.47 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 455 | 13.48 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 4 |
| 456 | 13.48 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 459 | 13.48 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 20 |
| 461 | 13.48 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 21 |
| 487 | 13.49 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 15 |
| 519 | 13.50 | humidity | 90 | 720 | > th | dose dependent | rect. | 14 | 11 |
| 622 | 13.54 | humidity | 90 | 720 | > th | dose dependent | sin | 18 | NA |
| 641 | 13.55 | humidity | 90 | 720 | > th | dose independent | rect. | 9 | 16 |
| 695 | 13.59 | wind | 1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 754 | 13.62 | humidity | 90 | 720 | > th | dose independent | rect. | 21 | 1 |
| 875 | 13.68 | humidity | 90 | 720 | > th | dose dependent | rect. | 23 | 1 |
| 890 | 13.69 | wind | 1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 911 | 13.70 | atmosphere | 1015 | 14400 | > th | dose independent | rect. | 23 | 2 |
| 915 | 13.70 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 987 | 13.70 | wind | 7 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 989 | 13.71 | atmosphere | 1015 | 14400 | > th | dose independent | sin | 8 | NA |
| 991 | 13.71 | atmosphere | 1015 | 14400 | < th | dose independent | sin | 8 | NA |
| 993 | 13.71 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 994 | 13.71 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 997 | 13.71 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 998 | 13.71 | atmosphere | 1015 | 14400 | < th | dose independent | rect. | 23 | 2 |