Os01g0212100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : ATP-dependent helicase, DEAH-box family protein.
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Os01g0212100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : ATP-dependent helicase, DEAH-box family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.28 | 0.309 | 10 | -0.823 | 0.658 | 0.932 | -0.135 | 0.0593 | -0.0729 | 16.9 | 20.77 | 1088 | -- | -- |
| 43.21 | 0.306 | 10 | -0.845 | 0.664 | 0.938 | -0.135 | -- | -0.0826 | 17 | 20.89 | 1176 | -- | -- |
| 43.24 | 0.306 | 10 | -0.824 | 0.669 | 0.939 | -- | 0.0717 | -0.0813 | 17 | 20.8 | 1175 | -- | -- |
| 43.25 | 0.306 | 10 | -0.845 | 0.662 | 0.937 | -- | -- | -0.0835 | 17 | 20.9 | 1180 | -- | -- |
| 60.57 | 0.362 | 10 | -0.776 | -- | 0.866 | -- | 0.00211 | -0.068 | -- | 20.78 | 432 | -- | -- |
| 66.38 | 0.382 | 9.97 | -0.456 | 0.629 | -- | 0.0049 | -- | 0.148 | 17.5 | -- | -- | -- | -- |
| 66.38 | 0.382 | 9.97 | -0.456 | 0.629 | -- | -- | -- | 0.148 | 17.5 | -- | -- | -- | -- |
| 60.56 | 0.362 | 10 | -0.772 | -- | 0.853 | -- | -- | -0.069 | -- | 20.9 | 432 | -- | -- |
| 56.8 | 0.351 | 9.99 | -- | 0.617 | 0.575 | -- | -- | 0.0352 | 16.8 | 22.3 | 858 | -- | -- |
| 86.97 | 0.436 | 9.96 | -0.477 | -- | -- | -- | -- | 0.133 | -- | -- | -- | -- | -- |
| 71.87 | 0.397 | 9.96 | -- | 0.637 | -- | -- | -- | 0.199 | 17.4 | -- | -- | -- | -- |
| 74.41 | 0.402 | 9.99 | -- | -- | 0.59 | -- | -- | 0.0184 | -- | 22.01 | 460 | -- | -- |
| 92.97 | 0.45 | 9.95 | -- | -- | -- | -- | -- | 0.186 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.85 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 3 | 41.04 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 11 | 41.96 | temperature | 30 | 270 | < th | dose dependent | sin | 6 | NA |
| 16 | 42.27 | temperature | 10 | 270 | > th | dose dependent | sin | 6 | NA |
| 23 | 42.62 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 31 | 42.71 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 13 |
| 49 | 43.16 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 22 |
| 61 | 43.40 | temperature | 25 | 270 | < th | dose dependent | sin | 1 | NA |
| 71 | 43.72 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 79 | 43.83 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 20 |
| 111 | 44.09 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 148 | 44.32 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 163 | 44.40 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 168 | 44.42 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 185 | 44.48 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 207 | 44.69 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 220 | 44.77 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 231 | 44.81 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 300 | 45.13 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 19 |
| 357 | 45.37 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 358 | 45.39 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 21 |
| 408 | 45.53 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 17 |
| 415 | 45.55 | temperature | 25 | 1440 | < th | dose dependent | sin | 17 | NA |
| 500 | 45.78 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 12 |
| 545 | 45.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 3 |
| 579 | 45.95 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 6 |
| 603 | 45.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 604 | 46.00 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 8 |
| 622 | 46.04 | temperature | 20 | 1440 | > th | dose independent | sin | 14 | NA |
| 639 | 46.07 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 710 | 46.20 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 19 |
| 720 | 46.22 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 12 |
| 760 | 46.27 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 14 |
| 879 | 46.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 10 | 20 |
| 930 | 46.47 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 3 |
| 949 | 46.48 | temperature | 20 | 720 | > th | dose independent | rect. | 7 | 23 |
| 979 | 46.50 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |