FiT-DB / Search/ Help/ Sample detail

Os06g0343100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to ATP-dependent helicase DHX8 (RNA helicase HRH1) (DEAH-box protein 8).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.57 (0.0138) R2 : 0.411
β1 : 0.898 (0.0506) R2dD : 0.422 R2D : 0.365
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.152 (0.0295) R2dN8 : 0.0458 R2N8 : -0.0111
σ : 0.259
deviance : 30.8
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
25.71 0.238 9.57 0.895 0.256 0.372 -0.0784 0.0856 0.157 23.2 80 722 -- --
25.73 0.236 9.57 0.9 0.259 0.375 -0.1 -- 0.159 23.1 80 721 -- --
25.74 0.236 9.57 0.896 0.257 0.371 -- 0.129 0.156 23.2 80 721 -- --
25.77 0.236 9.57 0.905 0.261 0.375 -- -- 0.158 23.3 80 733 -- --
27.32 0.243 9.56 0.906 -- 0.55 -- -0.319 0.179 -- 81.47 1685 -- --
28.72 0.251 9.57 0.89 0.191 -- 0.018 -- 0.147 3.1 -- -- -- --
28.72 0.251 9.57 0.89 0.191 -- -- -- 0.147 3.08 -- -- -- --
26.88 0.241 9.56 0.938 -- 0.403 -- -- 0.186 -- 75.93 1695 -- --
46.25 0.317 9.58 -- 0.218 0.353 -- -- 0.0839 22.4 85 524 -- --
30.8 0.259 9.57 0.898 -- -- -- -- 0.152 -- -- -- -- --
49.57 0.329 9.59 -- 0.209 -- -- -- 0.0477 3.1 -- -- -- --
47.22 0.32 9.58 -- -- 0.525 -- -- 0.101 -- 85 1787 -- --
52.06 0.337 9.59 -- -- -- -- -- 0.0521 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 24.66 humidity 80 720 > th dose independent rect. 21 1
4 24.96 wind 7 14400 < th dose independent rect. 11 1
5 25.05 wind 5 14400 > th dose dependent rect. 11 1
8 25.12 humidity 80 720 < th dose dependent rect. 18 8
10 25.14 wind 7 14400 > th dose independent rect. 11 1
11 25.14 radiation 10 1440 < th dose dependent rect. 18 2
17 25.16 humidity 80 720 < th dose dependent rect. 18 13
29 25.25 humidity 70 14400 < th dose independent rect. 18 4
40 25.26 temperature 30 720 > th dose dependent rect. 18 1
60 25.29 humidity 70 14400 > th dose independent rect. 19 3
68 25.29 humidity 70 14400 > th dose independent rect. 19 12
80 25.32 radiation 1 720 < th dose dependent rect. 5 20
82 25.33 humidity 80 720 > th dose independent rect. 4 20
86 25.36 radiation 10 1440 < th dose independent rect. 17 3
89 25.36 humidity 70 720 > th dose independent rect. 18 13
91 25.36 humidity 70 720 > th dose dependent rect. 19 3
93 25.37 humidity 70 720 > th dose independent rect. 18 7
97 25.37 radiation 20 14400 > th dose dependent rect. 16 15
101 25.38 radiation 10 1440 < th dose dependent rect. 18 8
105 25.39 humidity 80 720 > th dose independent rect. 10 14
108 25.39 wind 9 43200 < th dose dependent rect. 10 3
120 25.41 humidity 50 1440 < th dose independent rect. 16 1
124 25.41 radiation 10 1440 < th dose independent rect. 17 8
127 25.41 radiation 10 1440 > th dose independent rect. 17 13
131 25.41 wind 3 43200 < th dose dependent rect. 1 3
139 25.43 humidity 60 720 > th dose dependent rect. 18 6
144 25.44 radiation 30 14400 < th dose independent rect. 16 4
153 25.44 humidity 70 720 < th dose independent rect. 19 12
155 25.44 humidity 80 720 > th dose independent rect. 11 20
158 25.44 humidity 50 1440 < th dose dependent rect. 16 1
162 25.45 humidity 70 720 < th dose independent rect. 19 1
176 25.45 temperature 30 4320 > th dose dependent rect. 18 1
200 25.46 humidity 80 720 < th dose independent rect. 16 7
204 25.46 radiation 20 14400 > th dose dependent rect. 16 1
231 25.48 wind 3 43200 < th dose independent rect. 2 2
233 25.48 wind 7 14400 < th dose independent rect. 5 8
235 25.48 radiation 30 14400 < th dose independent rect. 16 9
260 25.50 wind 7 14400 > th dose independent rect. 5 8
266 25.50 humidity 80 720 > th dose independent rect. 18 22
267 25.50 humidity 70 720 < th dose dependent rect. 19 1
284 25.51 humidity 80 720 < th dose independent rect. 8 17
290 25.51 radiation 1 720 < th dose dependent rect. 13 12
291 25.52 humidity 80 720 < th dose independent sin 17 NA
299 25.52 radiation 1 720 < th dose dependent rect. 11 14
301 25.53 radiation 10 1440 > th dose independent rect. 17 1
369 25.56 humidity 80 720 < th dose dependent sin 11 NA
372 25.56 wind 1 43200 > th dose dependent rect. 3 11
373 25.57 humidity 80 720 > th dose independent sin 16 NA
399 25.58 wind 3 43200 > th dose independent rect. 3 1
426 25.58 wind 9 43200 < th dose dependent rect. 3 11
428 25.58 wind 1 43200 > th dose dependent rect. 24 14
444 25.60 temperature 30 720 < th dose independent rect. 18 7
448 25.60 radiation 30 14400 < th dose independent rect. 15 17
460 25.60 wind 9 43200 < th dose dependent rect. 24 14
461 25.60 radiation 30 14400 > th dose dependent rect. 15 17
467 25.61 humidity 70 14400 < th dose dependent rect. 18 1
475 25.61 radiation 1 1440 > th dose dependent rect. 17 14
502 25.62 humidity 80 720 < th dose independent rect. 14 23
511 25.62 humidity 70 14400 < th dose dependent rect. 18 13
533 25.63 wind 3 43200 > th dose independent rect. 3 10
542 25.63 humidity 80 720 < th dose independent rect. 16 21
547 25.63 radiation 1 1440 > th dose dependent rect. 18 1
600 25.65 humidity 80 720 < th dose independent rect. 6 19
607 25.65 humidity 70 14400 < th dose dependent rect. 18 4
646 25.66 wind 3 43200 < th dose independent rect. 3 10
648 25.66 humidity 80 720 < th dose independent rect. 11 14
657 25.66 radiation 10 1440 < th dose independent rect. 16 19
675 25.67 wind 3 43200 < th dose independent rect. 3 8
774 25.68 humidity 70 720 > th dose dependent rect. 4 20
792 25.69 humidity 80 720 < th dose independent rect. 11 23
793 25.69 temperature 25 14400 > th dose dependent rect. 23 1
806 25.69 radiation 20 1440 < th dose dependent rect. 17 14
814 25.70 radiation 30 14400 > th dose independent rect. 16 16
843 25.71 humidity 80 720 > th dose independent no NA NA
865 25.71 wind 1 43200 > th dose dependent sin 5 NA
885 25.71 humidity 70 720 > th dose dependent rect. 10 14
941 25.73 wind 3 43200 > th dose independent rect. 8 5
944 25.73 humidity 70 720 > th dose independent rect. 19 10
954 25.73 wind 9 43200 < th dose dependent sin 5 NA
993 25.74 humidity 80 720 > th dose independent rect. 23 23
996 25.74 humidity 80 43200 < th dose dependent rect. 22 1
998 25.74 radiation 30 14400 < th dose dependent rect. 18 2