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Os06g0192500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : ATP-dependent helicase, DEAH-box family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.77 (0.0146) R2 : 0.418
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.665 (0.0367) R2dC : 0.419 R2C : 0.417
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0261 (0.0308) R2dN8 : 0.00118 R2N8 : -0.000178
σ : 0.276
deviance : 34.81
__
_____
C
peak time of C : 15.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
29.16 0.254 8.77 -0.0085 0.502 0.374 -0.222 0.322 0.022 16.9 20.52 19 -- --
29.61 0.253 8.77 -0.00136 0.502 0.375 -0.113 -- 0.0206 16.9 20.55 17 -- --
29.27 0.252 8.77 -0.00928 0.503 0.37 -- 0.282 0.021 16.8 20.55 17 -- --
29.64 0.254 8.77 -0.000428 0.501 0.374 -- -- 0.0199 16.8 20.51 17 -- --
42.02 0.302 8.77 -0.015 -- 0.447 -- 0.375 0.000631 -- 17.65 19 -- --
34.71 0.276 8.77 0.034 0.665 -- 0.151 -- 0.0292 15.3 -- -- -- --
34.78 0.276 8.77 0.0369 0.666 -- -- -- 0.0302 15.3 -- -- -- --
37.64 0.286 8.78 -0.0341 -- 0.545 -- -- -0.00251 -- 10 203 -- --
29.64 0.254 8.77 -- 0.502 0.373 -- -- 0.0198 16.8 20.52 17 -- --
59.85 0.361 8.77 0.00869 -- -- -- -- 0.0126 -- -- -- -- --
34.81 0.276 8.77 -- 0.665 -- -- -- 0.0261 15.3 -- -- -- --
37.66 0.286 8.77 -- -- 0.534 -- -- -0.00528 -- 10.01 205 -- --
59.85 0.361 8.77 -- -- -- -- -- 0.0117 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 21.77 wind 9.0 270 < th dose dependent rect. 6 8
3 22.44 temperature 10.0 270 > th dose dependent rect. 6 7
4 22.64 wind 5.0 270 < th dose independent rect. 6 7
8 22.73 wind 9.0 90 < th dose dependent rect. 8 7
12 22.81 wind 7.0 90 < th dose independent rect. 8 19
24 23.09 wind 7.0 90 < th dose independent rect. 8 7
25 23.09 temperature 15.0 270 > th dose independent rect. 6 8
26 23.09 wind 7.0 10 < th dose independent rect. 9 18
34 23.32 humidity 90.0 90 < th dose independent rect. 8 7
35 23.33 temperature 15.0 10 > th dose dependent rect. 8 7
36 23.35 temperature 15.0 270 > th dose dependent rect. 7 4
37 23.35 wind 9.0 90 < th dose dependent rect. 8 19
43 23.47 temperature 15.0 10 > th dose dependent rect. 9 5
56 23.60 temperature 15.0 90 > th dose independent rect. 8 7
89 23.86 wind 7.0 270 < th dose dependent rect. 7 4
90 23.89 wind 5.0 270 < th dose independent rect. 7 4
96 23.93 wind 7.0 270 < th dose independent rect. 6 19
98 23.93 temperature 15.0 270 > th dose dependent rect. 9 1
104 23.96 radiation 1.0 270 > th dose independent rect. 6 7
132 24.23 wind 7.0 10 < th dose independent rect. 8 7
160 24.31 humidity 90.0 10 < th dose independent rect. 8 7
187 24.45 radiation 1.0 270 > th dose independent sin 4 NA
191 24.46 wind 9.0 270 < th dose independent rect. 5 22
193 24.48 radiation 1.0 270 < th dose independent sin 4 NA
196 24.49 temperature 15.0 90 > th dose independent rect. 8 19
226 24.62 precipitation 0.1 270 < th dose independent rect. 6 7
230 24.62 precipitation 0.1 270 < th dose dependent rect. 6 7
233 24.64 radiation 1.0 270 < th dose independent rect. 2 10
242 24.67 precipitation 0.1 270 < th dose independent rect. 13 17
247 24.67 precipitation 0.1 270 < th dose dependent rect. 13 17
255 24.71 atmosphere 995.0 270 > th dose independent rect. 6 7
256 24.71 atmosphere 1015.0 270 < th dose independent rect. 6 7
259 24.71 temperature 10.0 270 > th dose independent rect. 13 17
298 24.85 temperature 15.0 270 > th dose independent rect. 7 16
305 24.86 radiation 1.0 270 < th dose dependent rect. 2 10
307 24.87 humidity 50.0 270 > th dose independent rect. 6 7
331 24.92 radiation 1.0 270 < th dose dependent sin 4 NA
342 24.97 temperature 20.0 10 > th dose independent rect. 8 7
353 24.99 precipitation 0.1 10 < th dose independent rect. 3 6
355 24.99 humidity 50.0 270 > th dose independent rect. 17 9
356 24.99 precipitation 0.1 10 < th dose dependent rect. 3 6
361 25.01 wind 5.0 90 < th dose independent rect. 3 5
362 25.01 precipitation 0.1 90 < th dose independent rect. 3 5
363 25.01 precipitation 0.1 90 < th dose independent rect. 8 7
365 25.01 precipitation 0.1 90 < th dose dependent rect. 3 5
366 25.01 wind 9.0 10 < th dose dependent rect. 3 6
368 25.01 precipitation 0.1 90 < th dose dependent rect. 8 7
375 25.04 wind 9.0 270 < th dose independent rect. 13 17
376 25.04 temperature 15.0 270 > th dose independent rect. 6 19
383 25.06 temperature 20.0 270 > th dose independent rect. 7 4
389 25.07 wind 7.0 10 < th dose independent rect. 3 6
392 25.07 radiation 20.0 270 < th dose dependent rect. 17 9
400 25.10 precipitation 0.1 270 < th dose independent rect. 1 5
403 25.10 precipitation 0.1 270 < th dose dependent rect. 1 5
408 25.11 atmosphere 1015.0 90 < th dose independent rect. 8 7
409 25.11 radiation 10.0 270 < th dose independent rect. 17 9
414 25.12 radiation 1.0 90 > th dose independent rect. 8 7
419 25.13 atmosphere 995.0 90 > th dose independent rect. 8 7
420 25.13 wind 9.0 270 < th dose independent rect. 17 9
421 25.13 precipitation 0.1 90 < th dose independent rect. 8 19
422 25.13 precipitation 0.1 90 < th dose dependent rect. 8 19
442 25.16 temperature 10.0 90 > th dose independent rect. 3 5
444 25.16 temperature 30.0 90 < th dose independent rect. 3 5
445 25.16 humidity 50.0 90 > th dose independent rect. 3 5
447 25.16 atmosphere 995.0 90 > th dose independent rect. 3 5
448 25.16 atmosphere 1015.0 90 < th dose independent rect. 3 5
449 25.16 precipitation 0.1 270 < th dose independent rect. 24 7
450 25.16 atmosphere 995.0 270 > th dose independent rect. 13 17
454 25.16 precipitation 0.1 270 < th dose dependent rect. 24 7
456 25.17 temperature 30.0 270 < th dose independent rect. 17 9
458 25.17 radiation 40.0 90 < th dose independent rect. 15 17
466 25.19 precipitation 0.1 270 < th dose independent rect. 3 2
469 25.19 precipitation 0.1 270 < th dose dependent rect. 3 2
478 25.21 precipitation 0.1 270 < th dose independent rect. 2 15
482 25.21 precipitation 0.1 270 < th dose dependent rect. 2 15
484 25.22 radiation 40.0 90 < th dose independent rect. 3 5
486 25.22 temperature 10.0 270 > th dose independent rect. 17 9
491 25.22 temperature 10.0 270 > th dose independent rect. 2 15
492 25.22 atmosphere 1015.0 270 < th dose independent rect. 2 15
494 25.22 radiation 20.0 270 < th dose dependent rect. 1 6
498 25.23 wind 9.0 270 < th dose dependent rect. 9 1
503 25.24 temperature 10.0 10 > th dose independent rect. 3 6
505 25.24 temperature 30.0 10 < th dose independent rect. 3 6
506 25.24 humidity 50.0 10 > th dose independent rect. 3 6
508 25.24 atmosphere 995.0 10 > th dose independent rect. 3 6
509 25.24 atmosphere 1015.0 10 < th dose independent rect. 3 6
510 25.24 temperature 10.0 10 > th dose independent rect. 9 18
511 25.24 humidity 50.0 270 > th dose independent rect. 6 19
516 25.26 atmosphere 1010.0 270 < th dose independent rect. 1 5
518 25.26 wind 7.0 270 < th dose independent rect. 24 7
523 25.26 temperature 10.0 10 > th dose dependent rect. 9 18
530 25.27 precipitation 0.1 10 < th dose independent rect. 9 18
533 25.27 precipitation 0.1 10 < th dose dependent rect. 9 18
541 25.29 temperature 10.0 270 > th dose independent rect. 1 5
543 25.29 temperature 30.0 270 < th dose independent rect. 1 5
544 25.29 humidity 50.0 270 > th dose independent rect. 1 5
547 25.29 atmosphere 995.0 270 > th dose independent rect. 1 5
549 25.29 radiation 20.0 270 < th dose independent rect. 1 5
582 25.33 precipitation 0.1 270 < th dose independent rect. 6 19
589 25.33 precipitation 0.1 270 < th dose dependent rect. 6 19
609 25.35 precipitation 0.1 270 < th dose independent rect. 17 9
614 25.35 precipitation 0.1 270 < th dose dependent rect. 17 9
623 25.37 radiation 1.0 270 > th dose independent rect. 7 4
626 25.37 temperature 10.0 270 > th dose independent rect. 24 7
628 25.37 temperature 30.0 270 < th dose independent rect. 24 7
629 25.37 humidity 50.0 270 > th dose independent rect. 24 7
632 25.37 atmosphere 995.0 270 > th dose independent rect. 24 7
633 25.37 atmosphere 1015.0 270 < th dose independent rect. 24 7
635 25.37 radiation 30.0 270 < th dose independent rect. 24 7
639 25.37 wind 1.0 270 > th dose independent rect. 13 17
643 25.38 wind 7.0 270 < th dose independent rect. 3 2
661 25.39 radiation 1.0 270 < th dose dependent rect. 3 2
663 25.40 wind 7.0 270 < th dose independent rect. 19 16
683 25.44 temperature 15.0 270 > th dose independent rect. 9 1
685 25.44 temperature 10.0 270 > th dose independent rect. 3 2
687 25.44 temperature 30.0 270 < th dose independent rect. 3 2
688 25.44 humidity 50.0 270 > th dose independent rect. 3 2
691 25.44 atmosphere 995.0 270 > th dose independent rect. 3 2
692 25.44 atmosphere 1010.0 270 < th dose independent rect. 3 2
694 25.44 radiation 20.0 270 < th dose independent rect. 3 2
700 25.44 temperature 10.0 270 > th dose independent rect. 5 22
709 25.45 radiation 20.0 270 < th dose dependent rect. 3 2
728 25.47 radiation 1.0 270 < th dose independent rect. 3 2
750 25.48 wind 1.0 270 > th dose independent rect. 2 16
759 25.49 atmosphere 995.0 270 > th dose independent rect. 17 9
768 25.50 atmosphere 1015.0 270 < th dose independent rect. 13 17
811 25.56 radiation 1.0 270 > th dose independent rect. 9 1
827 25.58 wind 1.0 270 > th dose independent rect. 11 8
856 25.60 wind 1.0 270 > th dose independent rect. 1 5
859 25.60 atmosphere 995.0 90 > th dose independent rect. 8 19
861 25.60 temperature 15.0 10 > th dose dependent rect. 9 3
897 25.63 atmosphere 995.0 270 > th dose independent rect. 2 15
912 25.64 atmosphere 995.0 10 > th dose independent rect. 9 18
913 25.64 precipitation 0.1 270 < th dose independent rect. 5 22
919 25.64 precipitation 0.1 270 < th dose dependent rect. 5 22
929 25.66 atmosphere 1015.0 90 < th dose independent rect. 15 17