FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0389800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to ATP-dependent helicase DHX8 (RNA helicase HRH1) (DEAH-box protein 8).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.12 (0.0174) R2 : 8.76e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00733 (0.0367) R2dN8 : 0.000113 R2N8 : 8.76e-05
σ : 0.328
deviance : 49.37
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
47.17 0.323 3.03 0.931 0.0564 -0.625 -0.0912 4.72 0.0652 6.49 28.81 1715 -- --
47.91 0.322 3.12 0.159 0.0785 -0.124 -0.102 -- -0.0166 6.34 33.9 1957 -- --
47.17 0.32 3.03 0.934 0.0495 -0.644 -- 4.85 0.0714 6.73 28.71 1831 -- --
47.89 0.322 3.12 0.155 0.0839 -0.12 -- -- -0.016 5.89 31.8 1091 -- --
47.28 0.32 3.03 0.967 -- -0.674 -- 5.05 0.077 -- 28.7 1860 -- --
48.56 0.327 3.12 0.13 0.0805 -- -0.107 -- 0.00518 6.49 -- -- -- --
48.59 0.326 3.12 0.129 0.0801 -- -- -- 0.00556 6.63 -- -- -- --
48.16 0.323 3.11 0.235 -- -0.214 -- -- 0.0575 -- 7.52 6380 -- --
48.52 0.324 3.13 -- 0.085 -0.102 -- -- -0.0285 5.83 32 1096 -- --
48.92 0.327 3.12 0.131 -- -- -- -- 0.00717 -- -- -- -- --
49.03 0.328 3.12 -- 0.0817 -- -- -- -0.00879 6.54 -- -- -- --
48.89 0.326 3.13 -- -- -0.1 -- -- -0.027 -- 31.7 1069 -- --
49.37 0.328 3.12 -- -- -- -- -- -0.00733 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 43.80 atmosphere 1005.0 30 > th dose dependent rect. 2 1
2 43.86 temperature 20.0 30 > th dose dependent rect. 2 1
3 43.87 temperature 20.0 30 > th dose independent rect. 2 1
5 43.89 temperature 25.0 30 < th dose independent rect. 2 1
8 43.92 atmosphere 1000.0 30 > th dose independent rect. 2 1
11 43.96 wind 3.0 30 < th dose dependent rect. 2 1
15 43.99 wind 3.0 30 < th dose independent rect. 2 1
19 44.01 temperature 10.0 30 > th dose independent rect. 2 1
22 44.01 humidity 50.0 30 > th dose independent rect. 2 1
27 44.01 atmosphere 1010.0 30 < th dose independent rect. 2 1
29 44.01 radiation 1.0 30 < th dose independent rect. 2 1
34 44.01 precipitation 0.1 30 < th dose independent rect. 2 1
35 44.01 temperature 10.0 30 > th dose independent rect. 3 23
36 44.01 radiation 1.0 30 < th dose dependent rect. 2 1
41 44.01 precipitation 0.1 30 < th dose dependent rect. 2 1
42 44.02 humidity 50.0 30 > th dose dependent rect. 2 1
47 44.08 radiation 1.0 43200 < th dose dependent rect. 3 1
49 44.24 atmosphere 1015.0 30 < th dose dependent rect. 2 1
50 44.27 temperature 30.0 30 < th dose dependent rect. 2 1
62 44.41 wind 9.0 1440 < th dose independent rect. 3 1
63 44.41 temperature 10.0 1440 > th dose independent rect. 3 1
66 44.41 temperature 30.0 1440 < th dose independent rect. 3 1
70 44.41 humidity 50.0 1440 > th dose independent rect. 3 1
79 44.41 atmosphere 995.0 1440 > th dose independent rect. 3 1
80 44.41 radiation 1.0 1440 < th dose independent rect. 3 1
100 44.41 temperature 10.0 1440 > th dose independent rect. 4 23
103 44.41 radiation 1.0 1440 < th dose dependent rect. 3 1
113 44.45 temperature 25.0 90 > th dose independent rect. 1 3
115 44.48 wind 1.0 30 > th dose independent rect. 2 1
118 44.54 wind 9.0 30 < th dose independent rect. 3 23
132 44.81 atmosphere 1005.0 10 > th dose dependent rect. 2 3
170 45.04 atmosphere 1000.0 30 > th dose independent rect. 3 23
194 45.27 precipitation 0.1 30 < th dose independent rect. 3 23
196 45.27 precipitation 0.1 30 < th dose dependent rect. 3 23
249 45.87 wind 3.0 30 < th dose dependent rect. 2 3
261 46.00 humidity 50.0 30 > th dose independent rect. 3 23
265 46.04 temperature 30.0 10 > th dose independent rect. 10 1
273 46.09 atmosphere 1005.0 30 > th dose independent rect. 2 3
280 46.15 humidity 90.0 90 < th dose independent rect. 2 1
290 46.21 temperature 25.0 1440 < th dose independent rect. 1 2
300 46.26 temperature 10.0 30 > th dose dependent rect. 3 23
308 46.30 wind 3.0 30 < th dose independent rect. 2 3
317 46.38 wind 9.0 1440 < th dose independent rect. 3 3
318 46.38 temperature 10.0 1440 > th dose independent rect. 3 3
321 46.38 temperature 30.0 1440 < th dose independent rect. 3 3
325 46.38 humidity 50.0 1440 > th dose independent rect. 3 3
334 46.38 atmosphere 995.0 1440 > th dose independent rect. 3 3
335 46.38 radiation 20.0 1440 < th dose independent rect. 3 3
344 46.38 temperature 10.0 1440 > th dose independent rect. 6 21
349 46.40 temperature 30.0 30 < th dose independent rect. 2 12
351 46.41 wind 9.0 720 < th dose dependent rect. 2 1
363 46.46 temperature 10.0 30 > th dose dependent rect. 5 21
365 46.48 humidity 90.0 90 < th dose independent rect. 2 3
369 46.50 temperature 30.0 30 < th dose independent rect. 2 14
372 46.51 wind 3.0 30 < th dose dependent rect. 2 6
374 46.52 radiation 1.0 30 < th dose independent rect. 2 12
379 46.53 wind 9.0 30 < th dose independent rect. 5 21
382 46.53 radiation 1.0 30 < th dose dependent rect. 2 12
384 46.54 wind 5.0 14400 < th dose independent rect. 11 1
401 46.57 radiation 40.0 10 < th dose dependent rect. 14 12
402 46.58 radiation 1.0 30 < th dose independent rect. 2 6
410 46.58 radiation 1.0 30 < th dose dependent rect. 2 6
420 46.60 precipitation 0.1 30 < th dose independent rect. 2 3
425 46.60 precipitation 0.1 30 < th dose dependent rect. 2 3
428 46.61 temperature 10.0 30 > th dose independent rect. 2 3
430 46.61 temperature 30.0 30 < th dose independent rect. 2 3
431 46.61 humidity 50.0 30 > th dose independent rect. 2 3
434 46.61 atmosphere 995.0 30 > th dose independent rect. 2 3
435 46.61 atmosphere 1010.0 30 < th dose independent rect. 2 3
437 46.61 radiation 1.0 30 < th dose independent rect. 2 3
443 46.61 temperature 10.0 30 > th dose independent rect. 5 21
444 46.61 radiation 10.0 30 < th dose dependent rect. 2 3
469 46.66 atmosphere 1000.0 720 > th dose independent rect. 3 8
476 46.67 wind 5.0 14400 > th dose independent rect. 11 1
503 46.69 precipitation 0.1 30 < th dose independent rect. 5 21
511 46.69 humidity 80.0 14400 < th dose dependent rect. 1 8
512 46.69 precipitation 0.1 30 < th dose dependent rect. 5 21
530 46.72 humidity 50.0 30 > th dose independent rect. 5 21
551 46.74 radiation 40.0 30 < th dose independent rect. 14 12
553 46.74 temperature 30.0 720 < th dose independent rect. 15 22
556 46.74 temperature 25.0 720 > th dose dependent rect. 6 2
565 46.75 atmosphere 995.0 30 > th dose independent rect. 5 21
573 46.76 wind 7.0 14400 < th dose dependent rect. 11 1
576 46.77 radiation 10.0 10 < th dose independent rect. 14 12
578 46.77 wind 3.0 14400 > th dose dependent rect. 11 1
584 46.78 radiation 10.0 10 < th dose independent rect. 16 10
604 46.81 radiation 10.0 10 < th dose independent rect. 11 15
616 46.83 wind 5.0 720 < th dose independent rect. 2 1
620 46.83 humidity 50.0 30 > th dose dependent rect. 2 3
623 46.84 temperature 30.0 720 < th dose independent rect. 17 10
624 46.84 humidity 60.0 10 > th dose independent rect. 14 12
640 46.86 wind 9.0 10 < th dose independent rect. 14 12
644 46.87 temperature 10.0 10 > th dose independent rect. 2 12
646 46.87 temperature 10.0 10 > th dose independent rect. 14 12
648 46.87 atmosphere 995.0 10 > th dose independent rect. 2 12
649 46.87 atmosphere 1015.0 10 < th dose independent rect. 2 12
673 46.89 atmosphere 1005.0 10 < th dose independent rect. 8 2
678 46.89 temperature 30.0 720 < th dose independent rect. 15 14
685 46.90 temperature 10.0 43200 > th dose independent rect. 10 1
709 46.91 temperature 30.0 10 < th dose independent rect. 14 12
715 46.92 humidity 70.0 14400 > th dose independent rect. 8 1
748 46.92 wind 5.0 14400 < th dose independent rect. 10 5
763 46.93 atmosphere 995.0 10 > th dose independent rect. 2 14
790 46.95 wind 9.0 10 < th dose independent rect. 16 10
800 46.96 temperature 10.0 720 > th dose independent rect. 14 1
801 46.96 atmosphere 1015.0 720 < th dose independent rect. 14 1
802 46.96 precipitation 0.1 720 < th dose independent rect. 14 1
803 46.96 wind 5.0 14400 > th dose independent rect. 10 5
805 46.96 humidity 60.0 10 > th dose independent rect. 16 10
807 46.96 temperature 10.0 720 > th dose independent rect. 15 23
809 46.96 precipitation 0.1 720 < th dose dependent rect. 14 1
813 46.97 humidity 90.0 720 > th dose independent rect. 3 1
814 46.97 radiation 20.0 30 > th dose independent rect. 9 1
829 46.98 humidity 70.0 14400 < th dose independent rect. 8 1
838 46.98 temperature 30.0 10 < th dose independent rect. 16 10
840 46.98 temperature 10.0 1440 > th dose independent rect. 3 12
843 46.98 temperature 10.0 1440 > th dose independent rect. 15 12
859 46.99 wind 9.0 14400 > th dose independent rect. 16 1
864 46.99 temperature 10.0 10 > th dose independent rect. 16 10
869 46.99 temperature 10.0 10 > th dose independent rect. 2 14
872 46.99 atmosphere 1015.0 10 < th dose independent rect. 2 14
916 47.01 precipitation 0.1 30 < th dose independent rect. 2 12
930 47.01 precipitation 0.1 30 < th dose dependent rect. 2 12
931 47.02 precipitation 0.1 720 < th dose independent rect. 2 1
960 47.02 precipitation 0.1 720 < th dose dependent rect. 2 1
963 47.02 temperature 25.0 10 > th dose dependent rect. 8 3
968 47.02 radiation 40.0 1440 < th dose dependent rect. 18 10
970 47.03 wind 9.0 720 < th dose independent rect. 14 1
981 47.03 wind 1.0 14400 < th dose dependent rect. 6 2
991 47.03 wind 3.0 30 < th dose dependent rect. 2 10
994 47.04 wind 1.0 720 > th dose independent rect. 14 1