BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0303600 Os01g0303600|AK099496
(220 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0303600 RINGv domain containing protein 387 e-108
Os05g0355300 Zinc finger, RING-type domain containing protein 196 7e-51
Os01g0121200 RINGv domain containing protein 128 3e-30
Os08g0436200 RINGv domain containing protein 119 1e-27
Os05g0552400 RINGv domain containing protein 118 3e-27
Os02g0577100 RINGv domain containing protein 114 8e-26
Os11g0600700 Similar to RING domain protein 109 2e-24
Os01g0894600 RINGv domain containing protein 105 4e-23
>Os01g0303600 RINGv domain containing protein
Length = 220
Score = 387 bits (995), Expect = e-108, Method: Compositional matrix adjust.
Identities = 191/220 (86%), Positives = 191/220 (86%)
Query: 1 MERDEVCCSCAMRQCRICHEEEEEGCTAMESPCGCSGSLKYAHRGCVQRWCDEKGSTLCE 60
MERDEVCCSCAMRQCRICHEEEEEGCTAMESPCGCSGSLKYAHRGCVQRWCDEKGSTLCE
Sbjct: 1 MERDEVCCSCAMRQCRICHEEEEEGCTAMESPCGCSGSLKYAHRGCVQRWCDEKGSTLCE 60
Query: 61 ICLQNFEPGYTAPPKKAQPAHVAVTIRESLEVPRPSYEPEDTPLIGEQDYAECAGAAGRS 120
ICLQNFEPGYTAPPKKAQPAHVAVTIRESLEVPRPSYEPEDTPLIGEQDYAECAGAAGRS
Sbjct: 61 ICLQNFEPGYTAPPKKAQPAHVAVTIRESLEVPRPSYEPEDTPLIGEQDYAECAGAAGRS 120
Query: 121 ATWCRSVAVTFXXXXXXXXXXXXXXXGAAHQYAFSLLTIYLLRASGILLPFYVVMRLIST 180
ATWCRSVAVTF GAAHQYAFSLLTIYLLRASGILLPFYVVMRLIST
Sbjct: 121 ATWCRSVAVTFTAVLLLRHLVAVVTVGAAHQYAFSLLTIYLLRASGILLPFYVVMRLIST 180
Query: 181 VQKGXXXXXXXXXXXXXXNAARMHRLHGQEEQNQHAILVR 220
VQKG NAARMHRLHGQEEQNQHAILVR
Sbjct: 181 VQKGQRQYQLQLLQEQRRNAARMHRLHGQEEQNQHAILVR 220
>Os05g0355300 Zinc finger, RING-type domain containing protein
Length = 213
Score = 196 bits (499), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 102/206 (49%), Positives = 125/206 (60%), Gaps = 4/206 (1%)
Query: 17 ICHEEEEEGCTAMESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQNFEPGYTAPPKK 76
ICHEEE+E C A+ESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQNFE YT PPKK
Sbjct: 8 ICHEEEDEWCAAIESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQNFESDYTIPPKK 67
Query: 77 AQPAHVAVTIRESLEVPRPSYEPEDTPLIGEQDYA--ECAGAAGRSATWCRSVAVTFXXX 134
Q AVT+R + PE+ ++ YA E G ++WCRS+ +TF
Sbjct: 68 VQVVETAVTVR-AFFCRDEEMLPEELSQEDQEQYAGSEAQTGNGDCSSWCRSLTITFTIM 126
Query: 135 XXXXXXXXXXXXGAAHQYAFSLLTIYLLRASGILLPFYVVMRLISTVQKGX-XXXXXXXX 193
AA AFSL+TI+LLRA+GILLPFY +MR++ +Q+G
Sbjct: 127 LLVWHLIAVVTIEAADHCAFSLVTIFLLRAAGILLPFYAIMRMVRMIQQGQRQFRLQLLQ 186
Query: 194 XXXXXNAARMHRLHGQEEQNQHAILV 219
NA+ +H + GQE+ Q I V
Sbjct: 187 DQRRRNASNLHSMSGQEQHQQLVINV 212
>Os01g0121200 RINGv domain containing protein
Length = 269
Score = 128 bits (322), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 101/176 (57%), Gaps = 10/176 (5%)
Query: 12 MRQCRICHEEEEEGCTAMESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQNFEPGYT 71
M +CRIC EE+ + T+ME+PC C GSLKYAHR C+QRWC+EKG T+CEICLQ F+PGYT
Sbjct: 52 MVECRICQEEDWD--TSMEAPCACCGSLKYAHRKCIQRWCNEKGDTVCEICLQQFKPGYT 109
Query: 72 APPKKAQPAHVAVTIRESLEVPRPSYEPED--TPLIGEQD----YAECAGAAGRSATW-C 124
AP + + + R + E+ R T + E+D Y + RS+T C
Sbjct: 110 APQQLFHYGSIPMNFRGNWEIARQDLHDSQIITMVPSERDFMDGYEDYLPIRTRSSTLCC 169
Query: 125 RSVAVTFXXXXXXXXXXXXXXXGAAHQYAFSLLTIYLLRASGILLPFYVVMRLIST 180
R+VA+ F G +Y+ +L ++ +LR +GIL P V++R ++T
Sbjct: 170 RTVAIIFMSLLVLRHTLPLMIGGDG-EYSLALFSLLVLRTAGILFPILVMVRALAT 224
>Os08g0436200 RINGv domain containing protein
Length = 276
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 93/176 (52%), Gaps = 12/176 (6%)
Query: 14 QCRICHEEEEEGCTAMESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQNFEPGYTAP 73
+CRIC +EE+ + +ESPC C+GSLKYAHR CVQRWCDEKG CEIC + ++ GYTA
Sbjct: 60 ECRIC--QEEDNISNLESPCACTGSLKYAHRACVQRWCDEKGDLTCEICHEPYKHGYTAL 117
Query: 74 PKKAQPAHVAVTIRESLEVPRPSYEPEDTPLIG-------EQDYAECAGAAGRSATWCRS 126
P +A P + I + +++ D +I E DY + + SA +CRS
Sbjct: 118 P-RAHPDETTIDISGGWTITGTAFDLHDPRIIAMAQNHIMEADYDDYSVTNASSAAFCRS 176
Query: 127 VAVTFXXXXXXXXXXXXXXXGAAHQYAFSLLTIYLLRASGILLPFYVVMRLISTVQ 182
A+ A S+ ++LLR +G LLPFY++ I+ +Q
Sbjct: 177 AALILMALLVLRHVLVLTDED--EDDASSMFLLFLLRVTGFLLPFYIMAWAINILQ 230
>Os05g0552400 RINGv domain containing protein
Length = 252
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 92/174 (52%), Gaps = 6/174 (3%)
Query: 3 RDEVCCSCAMRQCRICHEEEEEGCTAMESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEIC 62
+DE S + +CRIC EE+++ T ME+PC C GSLKYAHR C+QRWCDEKG T+CEIC
Sbjct: 43 QDEREKSGVLVECRICQEEDDQ--TYMETPCSCRGSLKYAHRKCIQRWCDEKGDTICEIC 100
Query: 63 LQNFEPGYTAPPKKAQPAHVAVTIRESLEVPRPSYEPEDTPLIGEQDYA-ECAGAAGRSA 121
LQ + P YTAP K Q ++ R + + D Y E G
Sbjct: 101 LQQYTPNYTAPAKLFQHGRNSIFFRTPGYIQAQVMQNTDRSAAASTSYDPELPNPKG--V 158
Query: 122 TWCRSVAVTFXXXXXXXXXXXXXXXGAAHQYAFSLLTIYLLRASGILLPFYVVM 175
+CR VA+T G Y +++T+ +LR +GI++P Y+++
Sbjct: 159 IYCRIVALT-LMVLLLLHDAISVFLGDHDAYTVAMITLLMLRTAGIVIPVYIIL 211
>Os02g0577100 RINGv domain containing protein
Length = 250
Score = 114 bits (284), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 93/185 (50%), Gaps = 18/185 (9%)
Query: 11 AMRQCRICHEEEEEGCTAMESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQNFEPGY 70
M +CRIC +EE+ +ESPC CSGSLKYAHR CVQRWC+EKG +CEIC +++PGY
Sbjct: 28 GMVECRIC--QEEDLAKNLESPCACSGSLKYAHRECVQRWCNEKGDIICEICHVSYKPGY 85
Query: 71 TAPPKKAQPAHVAVTI------------RESLEVPRPSYEPEDTPLIGEQDYAECAGAAG 118
TAPP Q H TI R L PR + E +Y E
Sbjct: 86 TAPP---QVHHDETTIEISSGDWSISGNRLDLHDPRILAMAAAQHRLLEDEYDEYTATNN 142
Query: 119 RSATWCRSVAVTFXXXXXXXXXXXXXXXGAAHQYAFSLLTIYLLRASGILLPFYVVMRLI 178
+A +CRS+ A ++ +++LLRA+G LLP Y++ I
Sbjct: 143 NAAAFCRSI-FLILMALLLLRHTLTITSSDDEDDASAIFSLFLLRAAGFLLPCYIMAWAI 201
Query: 179 STVQK 183
S +Q+
Sbjct: 202 SIMQR 206
>Os11g0600700 Similar to RING domain protein
Length = 278
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 90/171 (52%), Gaps = 5/171 (2%)
Query: 14 QCRICHEEEEEGCTAMESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQNFEPGYTAP 73
+CRIC +EE+ +E PC CSGSLKYAHR CVQRWC+EKG CEIC + ++ GYTAP
Sbjct: 58 ECRIC--QEEDSIKNLEKPCACSGSLKYAHRACVQRWCNEKGDITCEICHEQYKHGYTAP 115
Query: 74 PKKAQPAHVAVTI-RESLEVPRPSYEPEDTPLIGEQDYAECAGAAGRSATWCRSVAVTFX 132
P + +P + I + PR + E +Y E AG A +CRS A+
Sbjct: 116 P-RVEPDDTIIDIGGDWARDPRIIAVAAAQRRLLETEYDEYAGTDASGAAFCRSAALI-L 173
Query: 133 XXXXXXXXXXXXXXGAAHQYAFSLLTIYLLRASGILLPFYVVMRLISTVQK 183
A ++ +++LLRA+G LLP Y++ + S + +
Sbjct: 174 MALLLLRHALSISDNEGDDDASTMFSLFLLRAAGFLLPCYIMAWIFSILHR 224
>Os01g0894600 RINGv domain containing protein
Length = 219
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 92/175 (52%), Gaps = 15/175 (8%)
Query: 11 AMRQCRICHEEEEEGCTAMESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQNFEPGY 70
M +CRIC EE +EG AM+SPC C+G+LK+AHR C+QRWCD+KG+ CEIC Q + P Y
Sbjct: 38 GMIECRICQEEGDEG--AMDSPCACTGTLKFAHRKCIQRWCDKKGNITCEICNQVYSPNY 95
Query: 71 TAPPKKAQPAHVAVTIRESLEVPRPSYEPEDTPL----IGEQ-----DYAECAGAAGRSA 121
PP K A + + +R+S V R +P D+ I EQ ++ +C + A
Sbjct: 96 VLPPTKCCSAEMDMDLRQSW-VGR--IDPHDSHFLAIAIAEQQLLQAEFDDCVSSNSSGA 152
Query: 122 TWCRSVAVTFXXXXXXXXXXXXXXXGAAHQYAFSLLTIYLLRASGILLPFYVVMR 176
T CR+V + + Q A L + L+ +G LP YV+ R
Sbjct: 153 TCCRTVVLILMLLLLVRHVVVFVRDVSMLQDATVLFSA-TLQFAGFFLPCYVIAR 206
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.134 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,051,611
Number of extensions: 273909
Number of successful extensions: 854
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 840
Number of HSP's successfully gapped: 8
Length of query: 220
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 123
Effective length of database: 11,971,043
Effective search space: 1472438289
Effective search space used: 1472438289
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)