BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0203800 Os01g0203800|AK100265
(520 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0203800 Protein of unknown function DUF641, plant doma... 754 0.0
Os05g0206600 Protein of unknown function DUF641, plant doma... 359 2e-99
Os10g0378400 Protein of unknown function DUF641, plant doma... 163 2e-40
Os10g0508100 Protein of unknown function DUF641, plant doma... 120 2e-27
Os11g0250700 112 8e-25
Os01g0823700 Protein of unknown function DUF641, plant doma... 103 2e-22
Os12g0113900 Conserved hypothetical protein 74 4e-13
Os03g0825600 Conserved hypothetical protein 70 3e-12
Os11g0114000 Protein of unknown function DUF641, plant doma... 67 2e-11
>Os01g0203800 Protein of unknown function DUF641, plant domain containing protein
Length = 520
Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/499 (77%), Positives = 389/499 (77%)
Query: 22 NLARTFTKLLRRKRXXXXXXXXXXGEPGVPDAAAASVVGDEYECSVEAAAAGVPXXXXXX 81
NLARTFTKLLRRKR GEPGVPDAAAASVVGDEYECSVEAAAAGVP
Sbjct: 22 NLARTFTKLLRRKRADAVAAATAVGEPGVPDAAAASVVGDEYECSVEAAAAGVPSLSKLK 81
Query: 82 XXGNLGAAYSLDAFFRNXXXXXXXXXXXXXXXQTSPQVAPDVAKDSLLANLFAGVSAVKA 141
GNLGAAYSLDAFFRN QTSPQVAPDVAKDSLLANLFAGVSAVKA
Sbjct: 82 LSGNLGAAYSLDAFFRNAAEKKAAGVAGVAVAQTSPQVAPDVAKDSLLANLFAGVSAVKA 141
Query: 142 AYAQLQLAQFPYDXXXXXXXXXXXXXELTRLSDTKRRYLRDPXXXXXXXXXXXXXXXXXX 201
AYAQLQLAQFPYD ELTRLSDTKRRYLRDP
Sbjct: 142 AYAQLQLAQFPYDAEAIQAADAALVAELTRLSDTKRRYLRDPAAAAKNAAAAGHTALYAH 201
Query: 202 XEEQRHLLKTYQITARKLEGELRAKEAEADRARSSXXXXXXXXXXXXXXXHPGRTLASLD 261
EEQRHLLKTYQITARKLEGELRAKEAEADRARSS HPGRTLASLD
Sbjct: 202 AEEQRHLLKTYQITARKLEGELRAKEAEADRARSSLTAELRAERAMEARLHPGRTLASLD 261
Query: 262 ELHLSGLNPTHFLTALRHTVKSIRSFSKSMLNSMQSAGWDLXXXXXXVHPGVQLRRAGDT 321
ELHLSGLNPTHFLTALRHTVKSIRSFSKSMLNSMQSAGWDL VHPGVQLRRAGDT
Sbjct: 262 ELHLSGLNPTHFLTALRHTVKSIRSFSKSMLNSMQSAGWDLAAAAAAVHPGVQLRRAGDT 321
Query: 322 KFVFESYVAMKMFANFHRRDFNLSFLXXXXXXXXXXXXXXXTELKAAPASAFLDARNARW 381
KFVFESYVAMKMFANFHRRDFNLSFL TELKAAPASAFLDARNARW
Sbjct: 322 KFVFESYVAMKMFANFHRRDFNLSFLDEREFYDRRRFFEEFTELKAAPASAFLDARNARW 381
Query: 382 GGFGKFLRAKYLSLVHARMETAFFGRLEQRGIVSAGPGFPESSWFADFAEMARRVWLLHC 441
GGFGKFLRAKYLSLVHARMETAFFGRLEQRGIVSAGPGFPESSWFADFAEMARRVWLLHC
Sbjct: 382 GGFGKFLRAKYLSLVHARMETAFFGRLEQRGIVSAGPGFPESSWFADFAEMARRVWLLHC 441
Query: 442 LFYAFDGGAEEDGASIFQVRTGARFSEVYMESVSDGRSDXXXXXXXXXRVVGFTVVPGFR 501
LFYAFDGGAEEDGASIFQVRTGARFSEVYMESVSDGRSD RVVGFTVVPGFR
Sbjct: 442 LFYAFDGGAEEDGASIFQVRTGARFSEVYMESVSDGRSDEAAAAAAEERVVGFTVVPGFR 501
Query: 502 VGRTMIQCRVYLSRPGRRP 520
VGRTMIQCRVYLSRPGRRP
Sbjct: 502 VGRTMIQCRVYLSRPGRRP 520
>Os05g0206600 Protein of unknown function DUF641, plant domain containing protein
Length = 485
Score = 359 bits (922), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 224/399 (56%), Positives = 256/399 (64%), Gaps = 13/399 (3%)
Query: 131 NLFAGVSAVKAAYAQLQLAQFPYDXXXXXXXXXXXXXELTRLSDTKRRYLRDPXXXXXXX 190
+LFAGVSAVKAAYAQLQ AQ PYD ELT+LSD KRR+ RDP
Sbjct: 91 SLFAGVSAVKAAYAQLQQAQHPYDSEAIQSADAAMVAELTKLSDHKRRFARDPAAAAKSA 150
Query: 191 XXXXXXXXXXXXEEQRHLLKTYQITARKLEGELRAKEAEADRARSSXXXXXXXXXXXXXX 250
+EQRHLL+TY+ITA KL ELRA++AEA+RAR++
Sbjct: 151 AAGPAALAAHA-DEQRHLLRTYEITAGKLGRELRARDAEAERARAALADDLRAARALEER 209
Query: 251 XHPGRTLASLDELHLSGLNPTHFLTALRHTVKSIRSFSKSMLNSMQSAGWDLXXXXXXVH 310
HPGRTLA+LD LHLSGLN THFLTALRH +S+RSF+KSML M+ AGWD H
Sbjct: 210 AHPGRTLAALDGLHLSGLNATHFLTALRHAARSVRSFAKSMLGEMRRAGWDPVAAAAAAH 269
Query: 311 PGVQLRRAGDTKFVFESYVAMKMFANFHRRDFNLSFLXXXXXXXXXXXXXXXTELKAAPA 370
PGV LR GD KF ES+VA+KMF FHRRDF LS L ELKAAPA
Sbjct: 270 PGVPLRHPGDAKFALESFVALKMFDGFHRRDFGLSALHDRSSYDRRRLFDEFAELKAAPA 329
Query: 371 SAFLDARNARWGGFGKFLRAKYLSLVHARMETAFFGRLEQR-GIVSAGPGFPESSWFADF 429
+ FLDAR++RWG G+FLR +YLS+VH RME AFFG QR SAG P + WFA+F
Sbjct: 330 AEFLDARSSRWGALGEFLRDRYLSVVHERMEAAFFGSTAQRGAAASAGAALPGTPWFAEF 389
Query: 430 AEMARRVWLLHCLFYAFDGGAEEDGASIFQVRTGARFSEVYMESVSDGRSDXXXXXXXXX 489
AEMARRVWLLHCLF AFD G ++IFQV GARFSEVYMESV DG D
Sbjct: 390 AEMARRVWLLHCLFLAFDDGG---ASTIFQVAAGARFSEVYMESVGDGDGDGDDGGAGTA 446
Query: 490 --------RVVGFTVVPGFRVGRTMIQCRVYLSRPGRRP 520
RVVGFTVVPGF+VGRT++QCRVYLSRP R+P
Sbjct: 447 VAAAAAGDRVVGFTVVPGFKVGRTVMQCRVYLSRPARQP 485
>Os10g0378400 Protein of unknown function DUF641, plant domain containing protein
Length = 338
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/317 (31%), Positives = 153/317 (48%), Gaps = 22/317 (6%)
Query: 206 RHLLKTYQITARKLEGELRAKEAEA-------DRARSSXXXXXXXXXXXXXXXHPGRTLA 258
++LLKTY++ +K + +++ ++ E D A+
Sbjct: 30 QNLLKTYEVMVKKFQSQIQTRDTEITHLQQQIDEAKLRKSKLEKKLKQRGLLNKESEESD 89
Query: 259 SLDELHLSGLNPTHFLTALRHTVKSIRSFSKSMLNSMQSAGWDLXXXXXXVHPGVQLRRA 318
D L P+ F +A+ + +SI FSK ++N M++AGWDL + P V R
Sbjct: 90 DEDNYFSIELTPSLFTSAVDNAYQSIHDFSKPLINMMKAAGWDLDAAANAIEPAVVYTRR 149
Query: 319 GDTKFVFESYVAMKMFANFHRRDFNLSFLXXXXXXXXXXXXXXXTELKAAPASAFLDARN 378
K+ FESY+ +MF F F++ + A A LD +
Sbjct: 150 AHKKYAFESYICQRMFGGFQEESFSVK-----AANITVSNEAFFHQFLAVRAMDPLDVLS 204
Query: 379 ARWGG-FGKFLRAKYLSLVHARMETAFFGRLEQRGIVSAGPGFPESSWFADFAEMARRVW 437
FGKF R+KYL LVH +ME +FFG ++QR V +G G P + ++ F ++A+ +W
Sbjct: 205 QNPDSVFGKFCRSKYLLLVHPKMEGSFFGNMDQRNYVMSG-GHPRTPFYQAFLKLAKSIW 263
Query: 438 LLHCLFYAFDGGAEEDGASIFQVRTGARFSEVYMESVSDGRSDXXXXXXXXXRVVGFTVV 497
LLH L Y+FD + +FQV+ G+ FSE++MESV + VG V+
Sbjct: 264 LLHRLAYSFDPKVK-----VFQVKKGSDFSEIHMESVV---KNIILDEGAERPKVGLMVM 315
Query: 498 PGFRVGRTMIQCRVYLS 514
PGF +G ++IQ RVYLS
Sbjct: 316 PGFLIGTSVIQSRVYLS 332
>Os10g0508100 Protein of unknown function DUF641, plant domain containing protein
Length = 470
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 109/395 (27%), Positives = 157/395 (39%), Gaps = 33/395 (8%)
Query: 133 FAGVSAVKAAYAQLQLAQFPYDXXXXXXXXXXXXXELTRLSDTKRRYLRDPXXXXXXXXX 192
A S+ +AAY LQ A P+ L RLS+ KR RDP
Sbjct: 84 LATASSFQAAYLHLQAAHAPFLPDAAAAADAAAVSHLRRLSEVKR-LARDPGVGGGALTA 142
Query: 193 XXXXXXXXXXEEQRHLLKTYQITARKLEGELRAKEAEADRAR------SSXXXXXXXXXX 246
E + LL+++ +L+ L K+A A R +
Sbjct: 143 HLEAQV----RENQALLRSFDAVVNRLQAALDGKDAAAASLRRDHAELADGNARLGARLD 198
Query: 247 XXXXXHPGRTLASLDELHLSGLNPTHFLTALRHTVKSIRSFSKSMLNSMQSAGWDLXXXX 306
PG A D+ + L+ F + LR ++ F++S+ + ++ AGWDL
Sbjct: 199 RALAPPPG---AGGDDALGAMLSAGVFDSVLRDALRVAHRFTRSLADLLRCAGWDLAAAA 255
Query: 307 XXVHPGVQLRRAGDTKFVFESYVAMKMFANFHRRDFNLSFLXXXXXXXXXXXXXXXT--- 363
V+PGV R G ++ S V + MF F F S +
Sbjct: 256 AAVYPGVAYSRPGHCRYALLSRVCLSMFDGFDSYQFGGSTDATTLEGIDLAIRRNESLQQ 315
Query: 364 ---ELKAAPASAFLDARNARWGGFGKFLRAKYLSLVHARMETAFFGRLEQRGIVSAGPGF 420
A P + + F +F KY L+H +E++ FG + + G
Sbjct: 316 FIEHSDADPMELINSSPDCE---FAQFCDRKYKQLIHPGIESSLFGNSDCGKLPVLGVAG 372
Query: 421 PESSWFADFAEMARRVWLLHCLFYAFDGGAEEDGASIFQVRTGARFSEVYMESV--SDGR 478
P + F MA +W LH L +A+D IFQ+ GA +S VYME++ S G
Sbjct: 373 P---LYELFVAMASSIWTLHRLAWAYD-----PAVGIFQIGQGAEYSVVYMENIVRSKGF 424
Query: 479 SDXXXXXXXXXRVVGFTVVPGFRVGRTMIQCRVYL 513
S VGFTVVPGFR+G T+IQCRVYL
Sbjct: 425 SGSKELGKMMRPKVGFTVVPGFRLGGTVIQCRVYL 459
>Os11g0250700
Length = 151
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 73/128 (57%), Gaps = 6/128 (4%)
Query: 295 MQSAGWDLXXXXXXVHPGVQLRRAGDTKFVFESYVAMKMFANFHRRDFNLSFLXXXXXXX 354
M+ AGWDL VHPGV L AGD KF ES++ + MF FH+ DF LS L
Sbjct: 1 MRQAGWDLI-----VHPGVPLCHAGDAKFTLESFITLNMFVGFHQWDFGLSALHDRSSYD 55
Query: 355 XXXXXXXXTELKAAPASAFLDARNARWGGFGKFLRAKYLSLVHARMETAFFGRLEQRGIV 414
ELKAAPA+ FLDAR++RWG +F YLS+VH RME FFG QRG V
Sbjct: 56 RRRFFDEFAELKAAPAAEFLDARSSRWGALDEFPCDGYLSVVHKRMEAVFFGSTAQRGAV 115
Query: 415 -SAGPGFP 421
SAG P
Sbjct: 116 ASAGARSP 123
>Os01g0823700 Protein of unknown function DUF641, plant domain containing protein
Length = 437
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/401 (23%), Positives = 150/401 (37%), Gaps = 48/401 (11%)
Query: 124 AKDSLLANLFAGVSAVKAAYAQLQLAQFPYDXXXXXXXXXXXXXELTRLSDTKRRYL--- 180
+++ + L +S +K +Y LQ A PYD EL + K Y+
Sbjct: 78 CEEAFVERLLDAISGLKLSYVNLQQALVPYDPEEITIADERFTSELQETAGLKDLYVNMN 137
Query: 181 --RDPXXXXXXXXXXXXXXXXXXXEEQRHLLKTYQITARKLEGELRAKEAEADRARSSXX 238
R+P +EQ+ L Q K + E+ AE D
Sbjct: 138 KWRNPMYQCYVGSRI---------QEQQKLAVELQAGMCKRDSEIVCLRAELDELERKNM 188
Query: 239 XXXXXXXXXXXXXHPGRTLASLDELHLSGLNPTHFLTALRHTVKSIRSFSKSMLNSMQSA 298
+ G++ F+ + KSI F+K ++ M+ +
Sbjct: 189 ELEEKIGQSALQKEGSFAIGM-------GVSTDMFMELFELSTKSIHDFAKLVVRWMKLS 241
Query: 299 GWDLXXXXXXVHPGVQLRRAGDTKFVFESYVAMKMFANFHRRDFNLSFLXXXXXXXXXXX 358
W+L + V + + E+Y A M +L
Sbjct: 242 RWNLGNLTSPIDNSVVYDKRSHKNYAVEAYFACMMLMGHKEEYLSLDVFDYVMSF----- 296
Query: 359 XXXXTELKAAPASAFLDARNARWGGFGKFLRAKYLSLVHARMETAFFGRLEQRGIVSAGP 418
+ P A + A ++ FG+F R KYL+++ ME +FFG L+ R V G
Sbjct: 297 --------SDPFDALMKAPDS---CFGRFCREKYLAILPPSMEDSFFGNLDHRSFVENG- 344
Query: 419 GFPESSWFADFAEMARRVWLLHCLFYAFDGGAEEDGASIFQVRTGARFSEVYMESVSDGR 478
G P + ++ F M+R VW + + + AE +F V+ G F +ME V
Sbjct: 345 GHPRTPFYQAFVTMSRYVWASLTVARSLNPRAE-----MFYVKGGTEFRSKHMECVPSKI 399
Query: 479 SDXXXXXXXXXRVVGFTVVPGFRVGRTMIQCRVYLSRPGRR 519
+ VGFTV+PGF++G T+I+CRVYLS R
Sbjct: 400 TKEGDKVS-----VGFTVMPGFKIGCTVIRCRVYLSMVNER 435
>Os12g0113900 Conserved hypothetical protein
Length = 423
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 70/154 (45%), Gaps = 20/154 (12%)
Query: 369 PASAFLDARNARWGGFGKFLRAKYLSLVHARMETAFF-GRLEQRGIVSAGPGFPESSWFA 427
P A ++ N+ F +F R KYL+ V + ME A F L+ R VS G G P + ++
Sbjct: 266 PLDALMEHPNS---SFARFCRTKYLAAVSSEMEAAMFRNNLDVRAFVSRG-GHPRTWFYR 321
Query: 428 DFAEMARRVWLLHCLFYAFDGGAEEDGASIFQVRTGARFSEVYMESV-------SDGRSD 480
FA MAR W L A + R G+R++ YM+SV GR +
Sbjct: 322 AFATMARSAWALRVAVTARRRCCGRGSVRMLYARRGSRYAAEYMDSVVAAAAAADAGRGE 381
Query: 481 XXXXXXXXXRVVGFTVVPGFRVGRTMIQCRVYLS 514
V FTV PG +VG TM+ CRV L
Sbjct: 382 GDG--------VAFTVTPGMKVGETMVACRVLLC 407
>Os03g0825600 Conserved hypothetical protein
Length = 317
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 83/321 (25%), Positives = 122/321 (38%), Gaps = 39/321 (12%)
Query: 212 YQITARKLEGELRAKEAEADRARSSXXXXXXXXXXXXXXXHPGRTLASLDELHLSGLNPT 271
Y+ L +L+AK+AE D + HP + AS G PT
Sbjct: 24 YEAALDDLRRQLQAKQAEVDGLKEKLAVASNRRNSRH---HPSKHNASGG----GGGAPT 76
Query: 272 H--FLTALRHTVKSIRSFSKSMLNSMQSAGWDLXXXXXXVHPGVQLRRAGDTKFVFESYV 329
F +IR+F+ +L M++AG DL + + + K E++V
Sbjct: 77 AELFAACAEQARAAIRAFAGHLLQLMRAAGLDLAAATRSLT-KIPVSSPQLAKHALEAHV 135
Query: 330 AMKMFANFHRRDFNLSFLXXXXXXXXXXXXXXXTELKAAPASAFLDARNARWG------- 382
+ F F L T+ F D R
Sbjct: 136 TRVLLVGFEHESFYLDGSLSSLLDPAAFRRERYTQ--------FRDMRGMEPAELLGLLP 187
Query: 383 --GFGKFLRAKYLSLVHARMETAFFGRLEQRGIVSAGPGFPESSWFADFAEMARRVWLLH 440
FG++ +K+ +L+ R+E A G E R V G P + ++ +F A+ VW+LH
Sbjct: 188 TCPFGRYAASKFAALLPPRVEQAVLGDGEHRRAVEGG-AHPRTPFYGEFLRAAKAVWMLH 246
Query: 441 CLFYAFDGGAEEDGASIFQVRTGARFSEVYMESVSDGRSDXXXXXXXXXRVVGFTVVPGF 500
L +A E S F+ GA F YMESV+ GR F V PGF
Sbjct: 247 LLAFAL-----ETPPSHFEAGRGAEFHPDYMESVAGGRGGGAAGMVVG-----FAVAPGF 296
Query: 501 RVGR-TMIQCRVYLSRPGRRP 520
R+G +++ RVYL G RP
Sbjct: 297 RLGNGAVVRARVYLVPRGGRP 317
>Os11g0114000 Protein of unknown function DUF641, plant domain containing protein
Length = 422
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 62/134 (46%), Gaps = 4/134 (2%)
Query: 382 GGFGKFLRAKYLSLVHARMETAFF-GRLEQRGIVSAGPGFPESSWFADFAEMARRVWLLH 440
F +F R KYL+ V + ME A F L+ R VS G G + ++ FA MAR W L
Sbjct: 276 SSFARFCRTKYLAAVPSEMEAAMFRNNLDVRAFVSRG-GHLRTWFYRAFATMARSAWALQ 334
Query: 441 CLFYAFDGGAEEDGASIFQVRTGARFSEVYMESVSDGRSDXXXXXXXXXRVVGFTVVPGF 500
A + R G+R++ YM+SV + V FTV PG
Sbjct: 335 VAVTAHRRCCGRGSVRMLYARRGSRYAAEYMDSVVAAAA--ADAGRGGGDGVAFTVTPGM 392
Query: 501 RVGRTMIQCRVYLS 514
+VG TM+ CRV+L
Sbjct: 393 KVGETMVACRVFLC 406
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.135 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,302,596
Number of extensions: 399598
Number of successful extensions: 648
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 630
Number of HSP's successfully gapped: 10
Length of query: 520
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 415
Effective length of database: 11,553,331
Effective search space: 4794632365
Effective search space used: 4794632365
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)