Os01g0203800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF641, plant domain containing protein.
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Os01g0203800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF641, plant domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.6 | 0.341 | 12.8 | 0.606 | 1.78 | -0.997 | -0.0231 | 0.203 | -0.0145 | 6.94 | 1.165 | 1455 | -- | -- |
| 52.61 | 0.338 | 12.8 | 0.615 | 1.77 | -1.04 | -0.0199 | -- | -0.00973 | 6.92 | 1 | 1459 | -- | -- |
| 52.56 | 0.338 | 12.8 | 0.606 | 1.77 | -1.02 | -- | 0.212 | -0.0137 | 6.86 | 1.17 | 1468 | -- | -- |
| 52.57 | 0.338 | 12.8 | 0.621 | 1.77 | -1.07 | -- | -- | -0.0126 | 6.85 | 0.9902 | 1471 | -- | -- |
| 209.72 | 0.678 | 12.8 | 0.882 | -- | -0.477 | -- | 0.201 | 0.146 | -- | 1.17 | 1468 | -- | -- |
| 64.07 | 0.375 | 12.7 | 0.864 | 1.8 | -- | -0.0362 | -- | 0.119 | 7.02 | -- | -- | -- | -- |
| 64.08 | 0.375 | 12.7 | 0.864 | 1.8 | -- | -- | -- | 0.119 | 7.02 | -- | -- | -- | -- |
| 131.18 | 0.533 | 12.7 | 1.34 | -- | 2.29 | -- | -- | 0.281 | -- | 2.621 | 2281 | -- | -- |
| 61.62 | 0.366 | 12.8 | -- | 1.77 | -1.31 | -- | -- | -0.0129 | 6.8 | 0.2481 | 1472 | -- | -- |
| 234.64 | 0.716 | 12.8 | 0.9 | -- | -- | -- | -- | 0.152 | -- | -- | -- | -- | -- |
| 83.74 | 0.428 | 12.8 | -- | 1.81 | -- | -- | -- | 0.0232 | 6.99 | -- | -- | -- | -- |
| 157.57 | 0.585 | 12.8 | -- | -- | 2.15 | -- | -- | 0.256 | -- | 5.314 | 2268 | -- | -- |
| 255.99 | 0.747 | 12.8 | -- | -- | -- | -- | -- | 0.0525 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.26 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 20 |
| 4 | 51.31 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 14 | 51.47 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 20 |
| 27 | 51.51 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 31 | 51.51 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 16 |
| 43 | 51.53 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 56 | 51.56 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 58 | 51.60 | radiation | 1 | 1440 | < th | dose dependent | sin | 22 | NA |
| 66 | 51.70 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 19 |
| 105 | 51.75 | radiation | 1 | 1440 | < th | dose independent | sin | 22 | NA |
| 110 | 51.78 | radiation | 1 | 1440 | > th | dose independent | sin | 22 | NA |
| 129 | 51.86 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 147 | 51.94 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 18 |
| 198 | 52.12 | humidity | 80 | 720 | > th | dose independent | rect. | 7 | 14 |
| 241 | 52.21 | humidity | 70 | 90 | > th | dose dependent | rect. | 9 | 18 |
| 254 | 52.22 | humidity | 70 | 10 | > th | dose dependent | rect. | 6 | 22 |
| 292 | 52.36 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 298 | 52.39 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 306 | 52.40 | humidity | 70 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 307 | 52.42 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 327 | 52.46 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 22 |
| 352 | 52.52 | humidity | 80 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 375 | 52.63 | humidity | 80 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 412 | 52.72 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 420 | 52.73 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 423 | 52.73 | radiation | 1 | 1440 | < th | dose dependent | rect. | 1 | 18 |
| 426 | 52.73 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 20 |
| 430 | 52.73 | radiation | 1 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 465 | 52.75 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 16 |
| 484 | 52.76 | humidity | 50 | 720 | > th | dose dependent | rect. | 5 | 22 |
| 507 | 52.78 | humidity | 50 | 720 | > th | dose dependent | rect. | 6 | 15 |
| 524 | 52.79 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 535 | 52.83 | humidity | 80 | 720 | < th | dose independent | rect. | 7 | 14 |
| 547 | 52.85 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 590 | 52.93 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 600 | 52.94 | temperature | 15 | 720 | > th | dose dependent | sin | 3 | NA |
| 613 | 52.95 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 650 | 52.98 | humidity | 50 | 720 | > th | dose dependent | rect. | 6 | 17 |
| 673 | 53.01 | radiation | 1 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 679 | 53.02 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 697 | 53.02 | radiation | 1 | 1440 | < th | dose independent | rect. | 1 | 18 |
| 713 | 53.02 | radiation | 1 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 718 | 53.02 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 6 |
| 724 | 53.03 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 726 | 53.03 | radiation | 1 | 1440 | < th | dose independent | rect. | 3 | 16 |
| 743 | 53.03 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 5 |
| 758 | 53.05 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 825 | 53.07 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 840 | 53.10 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 859 | 53.13 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 866 | 53.14 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 871 | 53.14 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 930 | 53.22 | humidity | 80 | 720 | > th | dose independent | rect. | 7 | 20 |
| 938 | 53.23 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 973 | 53.27 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 980 | 53.28 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 3 |