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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0114000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF641, plant domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.8 (0.0453) R2 : 0.767
β1 : -4.23 (0.166) R2dD : 0.347 R2D : 0.258
β2 : 0.612 (0.161) R2dC : 0.0152 R2C : -0.11
β3 : 2.59 (0.119) R2dE : 0.484 R2E : 0.353
β4 : 6.3 (0.486) R2dD*C : 0.0868 R2D*C : 0.0664
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.558 (0.0962) R2dN8 : 0.0269 R2N8 : -0.00324
σ : 0.843
deviance : 327.44
__
_____
C
peak time of C : 8.17
E
wheather : radiation
threshold : 53.85
memory length : 64
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15.3
open length of G : 13.8

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
329.21 0.852 4.82 -4.23 0.558 2.57 5.3 -0.929 -0.612 8.04 46.07 76 15 14
327.44 0.843 4.8 -4.23 0.612 2.59 6.3 -- -0.558 8.17 53.85 64 15.3 13.8
360.38 0.884 4.85 -4.16 0.692 2.25 -- -3.83 -0.678 4.96 63.88 76 14.9 13.9
444.94 0.982 4.82 -4.06 0.575 2.45 -- -- -0.614 6.35 49.36 55 15.4 13.8
373.91 0.901 4.83 -4.07 -- 2.3 -- -3.56 -0.569 -- 35.92 61 15.2 14
440.76 0.984 4.92 -4.17 2.74 -- -4.35 -- -0.708 23.3 -- -- -- --
516.66 1.06 4.91 -4 2.77 -- -- -- -0.699 23.7 -- -- -- --
452.8 0.991 4.82 -4.06 -- 2.32 -- -- -0.607 -- 32.42 51 15.5 13.8
877.82 1.38 4.73 -- 0.445 2.29 -- -- -0.188 5.81 34.51 47 15.4 13.8
998.15 1.48 4.85 -3.92 -- -- -- -- -0.666 -- -- -- -- --
938.69 1.43 4.81 -- 2.72 -- -- -- -0.254 23.6 -- -- -- --
883.16 1.38 4.73 -- -- 2.25 -- -- -0.169 -- 25.78 52 15.4 13.9
1403.95 1.75 4.75 -- -- -- -- -- -0.231 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 333.83 radiation 40.0 90 < th dose dependent rect. 15 14
2 335.32 wind 9.0 90 < th dose dependent rect. 16 13
6 339.79 temperature 30.0 720 < th dose independent rect. 18 14
8 340.35 humidity 70.0 720 > th dose independent rect. 19 11
12 343.40 humidity 70.0 720 > th dose independent rect. 18 13
15 344.39 temperature 15.0 720 > th dose dependent rect. 16 6
16 344.45 temperature 15.0 720 > th dose dependent rect. 17 4
17 344.49 temperature 10.0 720 > th dose dependent rect. 17 2
24 345.83 radiation 20.0 90 < th dose independent rect. 15 14
26 346.16 temperature 15.0 90 > th dose dependent rect. 23 6
27 346.25 atmosphere 995.0 90 > th dose independent rect. 15 14
34 347.11 temperature 20.0 90 > th dose dependent rect. 3 2
39 348.02 precipitation 0.1 90 < th dose independent rect. 15 14
40 348.02 precipitation 0.1 90 < th dose dependent rect. 15 14
43 348.54 precipitation 0.1 90 < th dose independent rect. 5 10
44 348.54 precipitation 0.1 90 < th dose dependent rect. 5 10
46 348.61 temperature 10.0 90 > th dose independent rect. 5 10
47 348.61 atmosphere 1015.0 90 < th dose independent rect. 5 10
48 348.61 temperature 10.0 90 > th dose independent rect. 15 14
49 348.64 temperature 20.0 90 > th dose independent rect. 3 2
58 349.27 humidity 50.0 90 > th dose independent rect. 5 10
65 350.15 atmosphere 995.0 90 > th dose independent rect. 5 10
71 350.43 wind 9.0 90 < th dose independent rect. 5 10
74 350.62 wind 9.0 90 < th dose independent rect. 15 14
76 350.67 wind 5.0 90 < th dose independent rect. 16 13
91 351.61 wind 7.0 90 < th dose dependent rect. 23 6
133 354.18 temperature 30.0 720 < th dose independent rect. 18 7
144 355.14 wind 5.0 90 < th dose dependent rect. 2 3
159 355.95 wind 5.0 90 < th dose independent rect. 23 6
175 356.59 atmosphere 995.0 720 > th dose independent rect. 18 14
182 357.00 wind 3.0 90 < th dose independent rect. 3 2
183 357.00 temperature 10.0 720 > th dose dependent sin 16 NA
192 357.18 humidity 50.0 90 > th dose independent rect. 16 13
211 357.76 humidity 50.0 90 > th dose dependent rect. 23 6
216 357.91 wind 9.0 720 < th dose independent rect. 17 1
224 358.15 humidity 70.0 90 > th dose dependent rect. 3 2
239 358.53 humidity 80.0 90 > th dose independent rect. 3 2
240 358.53 temperature 20.0 90 > th dose independent rect. 23 6
248 358.73 humidity 50.0 90 > th dose dependent rect. 16 13
254 358.96 temperature 15.0 90 > th dose independent rect. 5 22
255 359.03 atmosphere 1015.0 90 < th dose independent rect. 15 14
262 359.27 precipitation 0.1 90 < th dose independent rect. 3 2
263 359.27 precipitation 0.1 90 < th dose dependent rect. 3 2
268 359.41 temperature 30.0 720 < th dose independent rect. 18 5
277 359.68 radiation 1.0 90 < th dose dependent rect. 3 2
288 360.01 wind 7.0 720 < th dose independent rect. 17 18
290 360.06 precipitation 0.1 90 < th dose independent rect. 23 6
291 360.06 precipitation 0.1 90 < th dose dependent rect. 23 6
292 360.15 wind 9.0 90 < th dose independent rect. 5 22
296 360.25 precipitation 0.1 720 < th dose independent rect. 21 7
297 360.25 precipitation 0.1 720 < th dose dependent rect. 21 7
299 360.28 radiation 1.0 90 < th dose independent rect. 3 2
306 360.41 temperature 10.0 720 > th dose independent rect. 8 10
307 360.41 atmosphere 1015.0 720 < th dose independent rect. 8 10
308 360.41 temperature 10.0 720 > th dose independent rect. 18 14
311 360.42 temperature 10.0 90 > th dose independent rect. 3 2
313 360.42 temperature 30.0 90 < th dose independent rect. 3 2
314 360.42 humidity 50.0 90 > th dose independent rect. 3 2
317 360.42 atmosphere 995.0 90 > th dose independent rect. 3 2
318 360.42 atmosphere 1010.0 90 < th dose independent rect. 3 2
327 360.56 temperature 20.0 720 > th dose independent rect. 17 2
329 360.58 temperature 15.0 90 > th dose independent rect. 5 18
338 360.84 radiation 40.0 720 < th dose independent rect. 18 14
340 360.85 radiation 20.0 720 < th dose independent rect. 17 1
341 360.85 wind 9.0 90 < th dose independent rect. 5 18
342 360.86 temperature 10.0 720 > th dose independent rect. 17 1
343 360.86 atmosphere 1015.0 720 < th dose independent rect. 17 1
346 360.86 temperature 10.0 720 > th dose independent rect. 18 23
347 360.86 radiation 1.0 90 < th dose dependent rect. 23 6
349 360.88 radiation 1.0 90 < th dose independent rect. 23 6
353 361.02 temperature 10.0 720 > th dose independent rect. 20 10
354 361.02 temperature 30.0 720 < th dose independent rect. 20 10
355 361.02 humidity 50.0 720 > th dose independent rect. 20 10
358 361.02 atmosphere 995.0 720 > th dose independent rect. 20 10
359 361.02 radiation 20.0 720 < th dose independent rect. 20 10
362 361.02 temperature 10.0 720 > th dose independent rect. 6 14
363 361.02 atmosphere 1015.0 720 < th dose independent rect. 6 14
364 361.02 precipitation 0.1 720 < th dose independent rect. 17 18
365 361.02 humidity 50.0 720 > th dose dependent rect. 5 1
366 361.02 precipitation 0.1 720 < th dose dependent rect. 17 18
373 361.14 temperature 10.0 90 > th dose independent rect. 23 6
374 361.14 temperature 30.0 90 < th dose independent rect. 23 6
375 361.14 humidity 50.0 90 > th dose independent rect. 23 6
378 361.14 atmosphere 995.0 90 > th dose independent rect. 23 6
383 361.14 temperature 20.0 270 > th dose dependent rect. 1 1
391 361.41 wind 1.0 720 > th dose independent rect. 17 1
393 361.46 atmosphere 1015.0 90 < th dose independent rect. 23 6
414 362.01 radiation 1.0 90 < th dose dependent sin 7 NA
418 362.06 temperature 20.0 720 > th dose independent rect. 11 5
419 362.06 humidity 50.0 270 > th dose independent rect. 3 11
421 362.07 wind 9.0 720 < th dose independent rect. 8 10
423 362.11 wind 7.0 720 < th dose independent rect. 5 1
425 362.11 temperature 10.0 720 > th dose independent rect. 5 1
426 362.11 temperature 30.0 720 < th dose independent rect. 5 1
427 362.11 humidity 50.0 720 > th dose independent rect. 5 1
430 362.11 atmosphere 995.0 720 > th dose independent rect. 5 1
431 362.11 atmosphere 1015.0 720 < th dose independent rect. 5 1
432 362.11 radiation 20.0 720 < th dose independent rect. 5 1
435 362.11 temperature 10.0 720 > th dose independent rect. 6 23
436 362.13 precipitation 0.1 720 < th dose independent rect. 6 14
440 362.13 precipitation 0.1 720 < th dose dependent rect. 6 14
446 362.21 precipitation 0.1 720 < th dose independent rect. 8 10
447 362.21 precipitation 0.1 720 < th dose dependent rect. 8 10
454 362.33 wind 7.0 90 < th dose dependent rect. 21 8
457 362.38 atmosphere 1005.0 90 > th dose independent rect. 3 2
460 362.41 wind 1.0 10 > th dose independent rect. 5 11
461 362.42 radiation 20.0 14400 < th dose independent rect. 3 3
465 362.51 radiation 1.0 30 < th dose dependent sin 4 NA
466 362.53 wind 9.0 720 < th dose independent rect. 6 14
470 362.60 precipitation 0.1 720 < th dose independent rect. 5 1
471 362.60 precipitation 0.1 720 < th dose dependent rect. 5 1
473 362.62 radiation 40.0 720 < th dose dependent rect. 20 10
474 362.63 precipitation 0.1 720 < th dose independent rect. 17 1
475 362.63 precipitation 0.1 720 < th dose dependent rect. 17 1
482 362.85 wind 9.0 720 < th dose independent rect. 20 10
484 362.92 wind 9.0 270 < th dose independent rect. 3 11
488 363.02 wind 9.0 720 < th dose independent rect. 18 14
489 363.03 atmosphere 995.0 720 > th dose independent rect. 19 21
505 363.24 temperature 10.0 270 > th dose independent rect. 3 11
506 363.24 atmosphere 995.0 270 > th dose independent rect. 3 11
507 363.24 atmosphere 1015.0 270 < th dose independent rect. 3 11
514 363.30 temperature 10.0 1440 > th dose independent rect. 6 10
517 363.30 temperature 10.0 1440 > th dose independent rect. 16 14
536 363.54 wind 7.0 720 < th dose independent rect. 23 6
538 363.56 atmosphere 1015.0 90 < th dose independent rect. 5 18
562 363.89 precipitation 0.1 90 < th dose independent rect. 5 18
563 363.89 precipitation 0.1 90 < th dose dependent rect. 5 18
568 363.98 temperature 10.0 90 > th dose dependent rect. 19 10
570 364.00 radiation 40.0 720 < th dose dependent rect. 5 1
574 364.03 wind 7.0 720 < th dose independent rect. 21 7
577 364.07 humidity 70.0 720 > th dose independent rect. 19 4
580 364.13 wind 9.0 720 < th dose independent rect. 7 22
592 364.32 precipitation 0.1 720 < th dose independent rect. 23 6
594 364.32 precipitation 0.1 720 < th dose dependent rect. 23 6
618 364.55 radiation 1.0 720 < th dose dependent rect. 23 6
620 364.58 precipitation 0.1 720 < th dose independent rect. 9 7
621 364.58 precipitation 0.1 720 < th dose dependent rect. 9 7
622 364.59 atmosphere 995.0 720 > th dose independent rect. 11 5
631 364.63 precipitation 0.1 270 < th dose independent rect. 3 11
632 364.63 precipitation 0.1 270 < th dose dependent rect. 3 11
633 364.65 temperature 15.0 270 > th dose independent rect. 11 12
673 364.92 temperature 15.0 720 > th dose independent rect. 5 18
682 365.05 precipitation 0.1 720 < th dose independent rect. 7 20
683 365.05 precipitation 0.1 720 < th dose dependent rect. 7 20
687 365.08 humidity 50.0 720 > th dose dependent rect. 3 4
689 365.09 temperature 30.0 720 < th dose independent sin 12 NA
700 365.18 atmosphere 995.0 720 > th dose independent rect. 9 7
714 365.24 wind 1.0 720 > th dose independent rect. 6 13
726 365.33 humidity 70.0 720 > th dose independent rect. 18 6
728 365.34 radiation 10.0 720 < th dose independent rect. 23 6
748 365.44 atmosphere 1015.0 90 < th dose dependent rect. 3 2
751 365.47 temperature 30.0 720 < th dose independent rect. 15 4
763 365.54 wind 9.0 270 < th dose dependent rect. 23 12
766 365.57 wind 1.0 720 > th dose independent rect. 7 11
770 365.65 temperature 30.0 720 < th dose independent rect. 13 6
784 365.79 temperature 10.0 720 > th dose independent rect. 23 6
785 365.79 temperature 30.0 720 < th dose independent rect. 23 6
786 365.79 humidity 50.0 720 > th dose independent rect. 23 6
789 365.79 atmosphere 995.0 720 > th dose independent rect. 23 6
798 365.86 atmosphere 995.0 720 > th dose independent rect. 1 15
801 365.87 temperature 15.0 270 > th dose dependent rect. 23 10
828 366.18 wind 7.0 270 < th dose independent rect. 23 12
830 366.21 atmosphere 1015.0 720 < th dose independent rect. 11 6
831 366.21 temperature 10.0 720 > th dose independent rect. 17 18
850 366.38 wind 5.0 270 < th dose dependent rect. 1 1
853 366.41 radiation 1.0 30 < th dose independent sin 6 NA
854 366.41 temperature 10.0 720 > th dose independent rect. 9 7
855 366.41 atmosphere 1015.0 720 < th dose independent rect. 9 7
871 366.59 precipitation 0.1 720 < th dose independent rect. 11 19
873 366.59 precipitation 0.1 720 < th dose dependent rect. 11 19
884 366.67 wind 9.0 720 < th dose independent rect. 16 9
893 366.74 precipitation 0.1 720 < th dose independent rect. 20 10
894 366.74 precipitation 0.1 720 < th dose dependent rect. 20 10
896 366.75 radiation 1.0 720 < th dose dependent rect. 21 7
899 366.77 temperature 10.0 720 > th dose independent rect. 21 7
900 366.77 temperature 30.0 720 < th dose independent rect. 21 7
901 366.77 humidity 50.0 720 > th dose independent rect. 21 7
904 366.77 atmosphere 995.0 720 > th dose independent rect. 21 7
905 366.77 radiation 1.0 720 < th dose independent rect. 21 7
910 366.77 precipitation 0.1 720 < th dose independent rect. 16 11
912 366.77 atmosphere 995.0 90 > th dose dependent rect. 3 2
917 366.77 precipitation 0.1 720 < th dose dependent rect. 16 11
919 366.79 wind 1.0 90 > th dose independent rect. 5 18
945 367.00 wind 9.0 1440 < th dose independent rect. 3 3
946 367.00 temperature 10.0 1440 > th dose independent rect. 3 3
949 367.00 temperature 30.0 1440 < th dose independent rect. 3 3
953 367.00 humidity 50.0 1440 > th dose independent rect. 3 3
962 367.00 atmosphere 995.0 1440 > th dose independent rect. 3 3
976 367.02 radiation 20.0 14400 < th dose independent rect. 24 6
982 367.08 precipitation 0.1 720 < th dose independent rect. 11 5
983 367.08 precipitation 0.1 720 < th dose dependent rect. 11 5
994 367.23 precipitation 0.1 270 < th dose independent rect. 23 12
995 367.23 precipitation 0.1 270 < th dose dependent rect. 23 12
998 367.26 wind 9.0 720 < th dose independent rect. 7 20