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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0113900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.7 (0.0456) R2 : 0.51
β1 : -1.86 (0.188) R2dD : 0.149 R2D : 0.154
β2 : 0.675 (0.152) R2dC : 0.0437 R2C : 0.115
β3 : 0.726 (0.156) R2dE : 0.05 R2E : 0.106
β4 : -7.1 (0.651) R2dD*C : 0.315 R2D*C : 0.0251
β5 : 4.95 (0.939) R2dD*E : 0.0908 R2D*E : -0.0566
γ1 : -0.324 (0.0965) R2dN8 : 0.0173 R2N8 : 0.00111
σ : 0.826
deviance : 309.26
__
_____
C
peak time of C : 22
E
wheather : temperature
threshold : 14.64
memory length : 694
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.5
open length of G : 1.13

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
309.26 0.826 3.7 -1.86 0.675 0.726 -7.1 4.95 -0.324 22 14.64 694 17.5 1.13
334.94 0.852 3.64 -2.32 0.731 0.804 -5.36 -- -0.258 21.6 18.92 641 18.5 0.883
399.39 0.931 3.66 -1.21 1.26 0.713 -- 4.87 -0.287 22 13.58 2601 18.1 1.57
405.66 0.938 3.69 -2.1 0.79 0.773 -- -- -0.382 22 19.4 685 18.3 0.25
493.22 1.03 3.63 -1.32 -- 0.726 -- 4.15 -0.231 -- 13.05 2543 17.7 0.917
352.34 0.88 3.77 -2.21 1.24 -- -4.21 -- -0.416 22.2 -- -- -- --
418.46 0.958 3.76 -2.06 1.28 -- -- -- -0.414 23.1 -- -- -- --
416.86 0.951 3.73 -2.37 -- 1.34 -- -- -0.407 -- 14.51 708 17.7 0.511
521.81 1.06 3.7 -- 0.989 0.491 -- -- -0.194 22.6 20.4 649 18.7 0.0167
519.99 1.07 3.73 -2.03 -- -- -- -- -0.403 -- -- -- -- --
529.99 1.08 3.71 -- 1.26 -- -- -- -0.185 23 -- -- -- --
536.59 1.08 3.76 -- -- 1 -- -- -0.268 -- 7.739 700 17.8 0.283
628.4 1.17 3.68 -- -- -- -- -- -0.178 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 311.58 temperature 15.0 720 > th dose dependent rect. 17 2
35 318.82 temperature 20.0 720 > th dose dependent rect. 16 9
40 318.94 temperature 20.0 720 > th dose dependent rect. 16 12
45 319.28 wind 3.0 30 < th dose dependent rect. 3 2
71 320.51 humidity 70.0 720 < th dose independent rect. 17 14
81 320.65 humidity 70.0 720 < th dose independent rect. 17 3
96 320.75 temperature 15.0 720 > th dose dependent sin 16 NA
100 321.01 temperature 15.0 30 > th dose independent rect. 5 23
116 321.35 temperature 20.0 90 > th dose dependent rect. 3 2
119 321.51 temperature 30.0 720 > th dose independent rect. 17 2
133 321.53 temperature 25.0 30 < th dose independent rect. 4 1
138 321.72 humidity 80.0 720 < th dose independent rect. 11 2
139 321.74 humidity 90.0 30 > th dose dependent rect. 4 1
142 321.80 temperature 15.0 720 > th dose dependent rect. 13 15
147 322.03 temperature 20.0 90 > th dose independent rect. 3 2
149 322.06 humidity 80.0 720 < th dose dependent rect. 17 4
172 322.30 atmosphere 1015.0 720 < th dose dependent rect. 17 1
176 322.41 humidity 90.0 30 > th dose independent rect. 4 1
182 322.53 temperature 10.0 720 > th dose dependent rect. 11 17
198 322.87 atmosphere 1010.0 30 < th dose dependent rect. 4 1
203 322.91 radiation 1.0 10 < th dose independent rect. 4 3
244 323.52 temperature 15.0 90 > th dose dependent rect. 19 10
245 323.53 atmosphere 1005.0 720 < th dose independent rect. 17 1
252 323.66 wind 7.0 720 < th dose independent rect. 17 18
254 323.69 wind 3.0 90 < th dose independent rect. 3 2
269 323.87 temperature 30.0 720 < th dose independent rect. 17 15
273 323.96 temperature 25.0 720 > th dose dependent rect. 21 1
280 324.03 humidity 80.0 720 < th dose dependent rect. 19 2
297 324.25 humidity 70.0 90 > th dose dependent rect. 8 21
322 324.35 wind 9.0 90 < th dose dependent rect. 16 13
346 324.57 temperature 30.0 720 < th dose independent rect. 18 8
352 324.64 radiation 1.0 30 < th dose dependent rect. 4 3
353 324.65 temperature 30.0 720 < th dose independent rect. 15 15
354 324.65 wind 9.0 720 < th dose independent rect. 6 23
358 324.66 precipitation 0.1 720 < th dose independent rect. 17 1
359 324.66 precipitation 0.1 720 < th dose dependent rect. 17 1
393 324.84 radiation 20.0 30 < th dose dependent rect. 13 16
432 325.25 temperature 30.0 30 < th dose dependent rect. 4 1
433 325.27 temperature 15.0 1440 > th dose independent rect. 6 12
441 325.36 temperature 20.0 90 > th dose dependent rect. 23 6
451 325.43 temperature 15.0 1440 > th dose independent rect. 6 18
480 325.67 humidity 80.0 720 < th dose independent rect. 9 5
484 325.69 temperature 10.0 720 > th dose dependent rect. 23 5
485 325.69 radiation 1.0 30 < th dose dependent rect. 11 18
490 325.72 radiation 1.0 720 > th dose independent rect. 11 6
505 325.76 radiation 1.0 30 < th dose dependent rect. 13 16
507 325.79 wind 9.0 720 < th dose independent rect. 17 1
516 325.83 radiation 1.0 30 < th dose dependent rect. 23 23
561 325.92 precipitation 0.1 30 < th dose independent rect. 4 1
563 325.92 precipitation 0.1 30 < th dose dependent rect. 4 1
576 325.97 temperature 10.0 30 > th dose independent rect. 4 1
579 325.97 humidity 50.0 30 > th dose independent rect. 4 1
582 325.97 atmosphere 995.0 30 > th dose independent rect. 4 1
583 325.97 atmosphere 1010.0 30 < th dose independent rect. 4 1
592 325.97 humidity 60.0 720 > th dose dependent rect. 5 1
598 325.98 radiation 1.0 30 < th dose dependent rect. 21 23
606 326.03 radiation 1.0 30 < th dose independent rect. 11 18
618 326.09 radiation 1.0 30 < th dose independent rect. 13 16
620 326.11 temperature 30.0 720 < th dose independent sin 12 NA
667 326.33 temperature 10.0 90 > th dose dependent sin 12 NA
668 326.33 atmosphere 1015.0 90 < th dose dependent rect. 17 12
694 326.49 temperature 20.0 720 > th dose dependent rect. 21 7
706 326.57 wind 9.0 30 < th dose independent rect. 5 23
708 326.57 humidity 90.0 90 > th dose dependent rect. 21 8
720 326.63 temperature 20.0 90 > th dose independent rect. 23 6
726 326.66 humidity 70.0 720 < th dose dependent rect. 19 12
731 326.69 temperature 20.0 270 > th dose independent rect. 16 13
760 326.79 humidity 80.0 10 > th dose independent rect. 12 1
764 326.80 temperature 25.0 720 < th dose independent rect. 5 1
765 326.80 radiation 20.0 720 < th dose independent rect. 17 1
767 326.81 radiation 1.0 30 < th dose independent rect. 23 23
792 326.87 temperature 20.0 720 > th dose independent rect. 11 6
800 326.93 temperature 20.0 720 > th dose dependent rect. 21 5
816 327.00 radiation 1.0 30 < th dose independent rect. 21 23
823 327.03 wind 3.0 90 < th dose dependent rect. 23 6
826 327.04 atmosphere 1015.0 30 < th dose independent rect. 16 13
846 327.07 temperature 30.0 720 < th dose independent rect. 13 6
854 327.11 atmosphere 995.0 30 > th dose dependent rect. 4 1
898 327.32 temperature 10.0 720 > th dose independent rect. 17 1
899 327.32 atmosphere 1015.0 720 < th dose independent rect. 17 1
902 327.32 temperature 10.0 720 > th dose independent rect. 18 23
914 327.37 wind 1.0 10 < th dose independent rect. 4 8
925 327.42 precipitation 0.1 720 < th dose independent rect. 5 1
927 327.42 precipitation 0.1 720 < th dose dependent rect. 5 1
928 327.42 temperature 15.0 90 > th dose dependent rect. 21 8
931 327.44 radiation 1.0 720 > th dose independent rect. 9 8
934 327.45 radiation 20.0 90 < th dose independent rect. 15 14
945 327.48 wind 9.0 720 < th dose dependent rect. 17 1
946 327.48 temperature 15.0 10 > th dose dependent rect. 20 10
962 327.54 temperature 20.0 720 > th dose dependent rect. 23 2
964 327.55 wind 7.0 720 < th dose independent rect. 5 1
966 327.55 temperature 10.0 720 > th dose independent rect. 5 1
968 327.55 humidity 50.0 720 > th dose independent rect. 5 1
971 327.55 atmosphere 995.0 720 > th dose independent rect. 5 1
972 327.55 atmosphere 1015.0 720 < th dose independent rect. 5 1
973 327.55 radiation 20.0 720 < th dose independent rect. 5 1
976 327.55 temperature 10.0 720 > th dose independent rect. 6 23
989 327.62 wind 1.0 720 > th dose independent rect. 17 1