BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0113900 Os12g0113900|AK121827
(423 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G45260.1 | chr2:18664661-18665938 REVERSE LENGTH=426 138 5e-33
AT1G29300.1 | chr1:10248120-10249499 REVERSE LENGTH=460 97 2e-20
AT2G30380.1 | chr2:12948284-12950573 FORWARD LENGTH=520 95 7e-20
AT3G14870.1 | chr3:5004159-5005586 FORWARD LENGTH=476 89 4e-18
AT1G53380.1 | chr1:19913341-19914702 REVERSE LENGTH=454 87 1e-17
AT4G34080.1 | chr4:16326985-16327797 FORWARD LENGTH=271 83 3e-16
AT4G33320.1 | chr4:16057038-16057916 REVERSE LENGTH=293 73 2e-13
AT5G58960.1 | chr5:23805799-23808360 FORWARD LENGTH=560 60 3e-09
AT4G36100.1 | chr4:17082579-17083343 FORWARD LENGTH=237 49 7e-06
>AT2G45260.1 | chr2:18664661-18665938 REVERSE LENGTH=426
Length = 425
Score = 138 bits (348), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 100/390 (25%), Positives = 178/390 (45%), Gaps = 49/390 (12%)
Query: 58 VITRLFEEIGALKSTYIKLQKAHIPYNRPKIAFADEIITYELDSVTALQSLCSWNGS--- 114
+I+ LF I +LKS YI+LQ AH PY+ KI AD+++ EL +++ ++ N
Sbjct: 39 LISNLFGNISSLKSAYIELQSAHTPYDPEKIQAADKVVISELKNLSEMKHFYRENNPKPV 98
Query: 115 --------VGSLINDRWSL-------VQELEAETRKKDSDIMLLRRELDGLKSANSRLNK 159
+ + I ++ SL V++ ++E + KDS+I + ++++ +L K
Sbjct: 99 CVSPQDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEITQMLQKIEEANQKRLKLEK 158
Query: 160 QISSSKPSVNH--HKDYSIVLKKLTTPSAVLELFKVASTSVHDFAELIFSLI-------- 209
+ S N + D ++ LTT + ++ A+ +VHDF++ + +++
Sbjct: 159 NLKLRGMSTNEGSNGDGNMQFPDLTT-ELYVSTYEAAAKAVHDFSKPLINMMKAAGWDLD 217
Query: 210 SSPDHRCPNNADEHSPYKRYSLEAYLSRTMLAVHXXXXXXXXXXXXXXXX---------- 259
S+ + P+ P+K+Y+ E+Y+ + M +
Sbjct: 218 SAANSIEPDVVYAKRPHKKYAFESYICQRMFSGFQQKNFSVNSESAAVMANDDTDTFFRQ 277
Query: 260 --IMRCCDPLDALMEHPNSSFARFCRTKYLAAVSSEMEAAMFRNNLDVRAFVSRGGHPRT 317
++ DPLDAL +P+S+F FCR+KYL V +MEA+ F NLD R +V+ GGHPRT
Sbjct: 278 FLALKDMDPLDALGTNPDSNFGIFCRSKYLLLVHPKMEASFF-GNLDQRDYVTGGGHPRT 336
Query: 318 WFYRAFATMARSAWALRVAVTARRRCCGRGSVRMLYARRGSRYXXXXXXXXXXXXXXXXX 377
FY+AF +A+S W L R + ++ ++GS +
Sbjct: 337 AFYQAFLKLAKSIWILH-----RLAYSFDPAAKIFQVKKGSEF--SDSYMESVVKNIVVD 389
Query: 378 XXXXXXXXXFTVTPGMKVGETMVACRVLLC 407
V PG +G +++ RV +
Sbjct: 390 EKEENPRVGLMVMPGFWIGGSVIQSRVYVS 419
>AT1G29300.1 | chr1:10248120-10249499 REVERSE LENGTH=460
Length = 459
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/390 (23%), Positives = 158/390 (40%), Gaps = 67/390 (17%)
Query: 58 VITRLFEEIGALKSTYIKLQKAHIPYNRPKIAFADEIITYELDSVTALQ--------SLC 109
V+ ++F ++K+ Y +LQ A PY+ I AD + EL +++ L+ +L
Sbjct: 88 VVAKIFASTTSIKAAYAELQMAQRPYDNDAIQAADTAVVEELRALSELKRSFLRKELNLS 147
Query: 110 SWNGSVGSLINDRWSLVQELEAETRKKDSDIMLLRRELDGLKSA-------NSRLNKQIS 162
+ + I ++ SL++ E +K + ++ + ++D LK + N L K++S
Sbjct: 148 PQVAIMLAEIQEQQSLMRTYEITIKKLEFEVTEKQLKIDELKMSFEESLVVNKSLEKKLS 207
Query: 163 SSKPSVNHHKDYSIVLKKLTTPSAVLELFKVASTSVHDFAELIF---------------- 206
+S SV+ + I + S+ +++ SV F +LI
Sbjct: 208 AS-GSVSVFDNIEI---RNLNLSSFVQVLGFTLRSVRSFVKLIVKEMESASWDLDAAASA 263
Query: 207 ----------SLISSPDHRCPNNADEHSPYKRYSLEAYLSRTMLAVHXXXXXXXXXXXXX 256
++ + P HRC ++ E+++ M
Sbjct: 264 AVSVNVKNASTVFARPSHRC------------FAFESFVCGKMFENFGAPDFSRREEFEK 311
Query: 257 XXXIMRCCDPLDALMEHPNSSFARFCRTKYLAAVSSEMEAAMFRNNLDVRAFVSRGGHPR 316
+R DP+ L +P SSFARF KYL+ V ++ME + F NL+ R V+ GG P
Sbjct: 312 ----LRSVDPIQYLTRNPGSSFARFVVHKYLSVVHAKMECSFF-GNLNQRKLVNSGGFPD 366
Query: 317 TWFYRAFATMARSAWALRVAVTARRRCCGRGSVRMLYARRGSRYXXXXXXXXXXXXXXXX 376
+ F+ F MA+ W L + G+V + +RG R+
Sbjct: 367 SGFFATFCEMAKRIWLLHCLAFSL-----SGNVTVFQLKRGCRFSQVYMESVKSGDESLF 421
Query: 377 XXXXXXXXXXFTVTPGMKVGETMVACRVLL 406
FTV PG K+GE ++ +V L
Sbjct: 422 SGDNSDIRVGFTVVPGFKIGENVIQSQVYL 451
>AT2G30380.1 | chr2:12948284-12950573 FORWARD LENGTH=520
Length = 519
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 149/342 (43%), Gaps = 72/342 (21%)
Query: 14 TCNVPGLVLGFSKLCKITKICAAPE--------FADTKTEFGDYCG------------GY 53
+ N+ ++ F+K+CK I P+ D K + + C +
Sbjct: 12 SSNISEVISKFAKVCKFRSIGVFPDQKSNSNEILVDDKAKETEICDFNHKPSSMIQTFSW 71
Query: 54 DQRLVITRLFEEIGALKSTYIKLQKAHIPYNRPKIAFADEIITYELDSVTALQ------- 106
D I++LF+ + +LK Y++ Q+AH+PY+ KI AD ++ +L+++ ++
Sbjct: 72 DDG-EISKLFDIVSSLKLAYLEFQQAHLPYDPDKIIEADNLVVSQLEALRRIKRLYLKTI 130
Query: 107 SLCSWNGSVGSLINDRWSL--------VQELEAETRKKDSDIMLLRRELDGLKSANSRLN 158
L + + + DR +++L+A+ R K+S+I L ++ + L + N +L
Sbjct: 131 QLNAKKTEIAASCLDRLRYEIEVNEKHLEKLKAQVRAKESEIHSLIKKQECLVAENRKLE 190
Query: 159 KQISSSKPSVNHHKDYSIVLKKLTTPSAVLELFKVASTSVHDFAELIFSLISSPDHRCPN 218
+I S S+ F+ AS SVHDFA+ + +L+ + D
Sbjct: 191 NRIVSV--------------------SSFEFAFRAASKSVHDFAKPLITLMKATDWNLEK 230
Query: 219 NADE--------HSPYKRYSLEAYLSRTMLAVHXXXXXXXXXXXXXXXXIMRCCDPLDAL 270
+ + K+Y+ E+Y+ R M +M DPLDAL
Sbjct: 231 AVESIVGNVTFAKTSDKKYAFESYIVRRMF-------HGIKLNPCDVTELMSFDDPLDAL 283
Query: 271 MEHPNSSFARFCRTKYLAAVSSEMEAAMFRNNLDVRAFVSRG 312
+S+F+RFC KYL V MEA+ F NLD+R V G
Sbjct: 284 TAFSDSAFSRFCGQKYLLVVHPSMEASFF-GNLDMRGLVLLG 324
>AT3G14870.1 | chr3:5004159-5005586 FORWARD LENGTH=476
Length = 475
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 96/419 (22%), Positives = 160/419 (38%), Gaps = 71/419 (16%)
Query: 40 ADTKTEFGDYCGGYDQRL----VITRLFEEIGALKSTYIKLQKAHIPYNRPKIAFADEII 95
A+ F Y++RL ++ +LF I ++KS Y +LQ A PY+ I AD ++
Sbjct: 66 ANLSESFDKLEEEYEKRLAMEALLAKLFATISSIKSGYAQLQYAQSPYDPNGIQKADNLV 125
Query: 96 TYELDSVTALQS---------------LCSWNGSVGSLINDRWSLVQELEAETRKKDSDI 140
EL +++ L+ + + + S++ + ++LE + + KDS+I
Sbjct: 126 VAELKTLSELKQSFLKKQLDPNPDRTLVLAEIQELRSVLKTYEIMGKKLECQLKLKDSEI 185
Query: 141 MLLRRELDGLKSANSRLNKQISSSKPSVNHHKDYSIVLKKLTTPSAV------------- 187
+ L+ + + N + K+++ S N D+++ L +++ V
Sbjct: 186 IFLKEKFQESMTQNKLMEKRLNQSGQLCNPL-DHNLHLSAVSSTHFVTYLHHTVKSIRGF 244
Query: 188 ----LELFKVASTSVHDFAELIFS--LISSPDHRCPNNADEHSPYKRYSLEAYLSRTMLA 241
+E K+A+ + AELI L DH+C ++LE Y+ + ML
Sbjct: 245 VKLMVEQMKLAAWDIDMAAELIQPDVLYYKQDHKC------------FALEHYVCKIMLE 292
Query: 242 VHXXXXXXXXXXXXXXX----------XIMRCCDPLDALMEHPNSSFARFCRTKYLAAVS 291
+R P + L P S A+FCRTKYL +
Sbjct: 293 AFQLPYFSNESSKKTSREDKAMFFERFTELRSMKPREYLASRPKSRLAKFCRTKYLQLIH 352
Query: 292 SEMEAAMFRNNLDVRAFVSRGGHPRTWFYRAFATMARSAWALRVAVTARRRCCGRGSVRM 351
+ME A F +L R V+ G P T AF MA+ W L + +
Sbjct: 353 PKMEQAFF-GHLHQRNQVTAGEFPETSLCTAFLEMAKRVWLLHCLAFS-----FDPEASI 406
Query: 352 LYARRGSR----YXXXXXXXXXXXXXXXXXXXXXXXXXXFTVTPGMKVGETMVACRVLL 406
RG R Y FTV PG ++G+T + C V L
Sbjct: 407 FQVSRGCRFSEVYMKSVSEEAFFSPEQEESSSETEPGVAFTVVPGFRIGKTTIQCEVYL 465
>AT1G53380.1 | chr1:19913341-19914702 REVERSE LENGTH=454
Length = 453
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 93/395 (23%), Positives = 147/395 (37%), Gaps = 60/395 (15%)
Query: 58 VITRLFEEIGALKSTYIKLQKAHIPYNRPKIAFADEIITYELDSVTALQSLCSWNGSVG- 116
++ +LF + ++K+ Y +LQ + PY+ I AD ++ EL +++ L+ C V
Sbjct: 70 LLAKLFATVSSIKAAYAQLQHSQSPYDSIGIQKADNLVVAELKTLSELKQ-CFMKKQVDP 128
Query: 117 ---------------SLINDRWSLVQELEAETRKKDSDIMLLRRELDGLKSANS----RL 157
SL+ + ++LE++ + KDS+I+ LR +LD N RL
Sbjct: 129 NPERTLVLAEIQELRSLLKTYEIMGKKLESQYKLKDSEIIFLREKLDESMKQNKLTEKRL 188
Query: 158 NKQISSSKPSVNHHKDYSIVLKKLTTPSAVLELFKVASTSVHDFAELIFSLISSPDHRCP 217
N+ P N H L L P+ + S F +L+ +
Sbjct: 189 NQSGQLCNPLDNLH------LSALN-PTHFVTYLHHTVKSTRGFVKLMIEQMKLAGWDIS 241
Query: 218 NNADEHSP----YKR----YSLEAYLSRTML-AVHXXXXXXXXXXXXXXXXI-------- 260
+ A+ P YK+ ++ E ++S M A H
Sbjct: 242 SAANSIHPGVFYYKQDHKCFTFEHFVSNVMFEAFHLPYFSTSSESRSYKKKKQSNADREM 301
Query: 261 -------MRCCDPLDALMEHPNSSFARFCRTKYLAAVSSEMEAAMFRNNLDVRAFVSRGG 313
+R D L P S FARFCR KYL + +ME A F +L +R VS G
Sbjct: 302 FFERFKELRSMKAKDYLTARPKSRFARFCRAKYLQLIHPKMEQAFF-GHLHLRNQVSAGE 360
Query: 314 HPRTWFYRAFATMARSAWALRVAVTARRRCCGRGSVRMLYARRGSRYXXXXXXXXXXXXX 373
P T + F MA+ W L + R + +G R+
Sbjct: 361 FPETSLFSGFLEMAKRIWLLHCLALSFER-----EAEIFRVPKGCRFSEVYMKSVAEEAF 415
Query: 374 XXXXXXXXXXX--XXFTVTPGMKVGETMVACRVLL 406
FTV PG ++G+T + C V L
Sbjct: 416 FPAAESSPESEPRVAFTVVPGFRIGKTSIQCEVYL 450
>AT4G34080.1 | chr4:16326985-16327797 FORWARD LENGTH=271
Length = 270
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 122/268 (45%), Gaps = 41/268 (15%)
Query: 58 VITRLFEEIGALKSTYIKLQKAHIPYNRPKIAFADEIITYELDSVTALQSLCSWNGS--- 114
+I+ LF I +LKS YI+LQ AH PY+ KI AD+++ EL +++ ++ N
Sbjct: 4 LISNLFGNISSLKSAYIELQSAHTPYDPEKIQAADKVVISELKNLSEMKHFYRENNPKPV 63
Query: 115 --------VGSLINDRWSL-------VQELEAETRKKDSDIMLLRRELDGLKSANSRLNK 159
+ + I ++ SL V++ ++E + KDS+I + ++++ +L K
Sbjct: 64 CVSPQDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEITQMLQKIEEANQKRLKLEK 123
Query: 160 QISSSKPSVNHHK--DYSIVLKKLTTPSAVLELFKVASTSVHDFAELIFSLI-------- 209
+ S N D ++ LTT + ++ A+ VHDF++ + +++
Sbjct: 124 NLKLRGMSTNQGSGGDGNLQFPDLTT-ELFVSTYEAAAKVVHDFSKPLINMMKAAGWDLD 182
Query: 210 SSPDHRCPNNADEHSPYKRYSLEAYLSRTMLAVHXXXXXXXXXXXXXXXX---------- 259
++ + P+ P+K Y+ E+Y+ + M +
Sbjct: 183 TAANSIEPDVVYAKRPHKEYAFESYICQRMFSGFQQKNFSVNSESATVMADDDTDTFFRQ 242
Query: 260 --IMRCCDPLDALMEHPNSSFARFCRTK 285
++ DPLDAL +P+S+F FCR+K
Sbjct: 243 FLALKDMDPLDALGTNPDSNFGIFCRSK 270
>AT4G33320.1 | chr4:16057038-16057916 REVERSE LENGTH=293
Length = 292
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 123/274 (44%), Gaps = 42/274 (15%)
Query: 58 VITRLFEEIGALKSTYIKLQKAHIPYNRPKIAFADEIITYELDSVTALQS---------- 107
+I+ LF I +LKS YI+LQ AH PY+ KI AD+++ EL +++ ++
Sbjct: 15 LISNLFGNISSLKSAYIELQSAHTPYDPEKIQAADKVVNSELKNLSEMKHSYRENNPKPV 74
Query: 108 -LCSWNGSVGSLINDRWSL--------VQELEAETRKKDSDIMLLRRELDGLKSANSRLN 158
+ + + + I ++ SL V++ ++E + KDS+I + ++++ +L
Sbjct: 75 CVSPQDSRLAAEIQEQQSLLKTYYEVMVKKFQSEIQNKDSEITQMLQKIEEANKKRLKLE 134
Query: 159 KQISSSKPSVNHHK--DYSIVLKKLTTPSAVLELFKVASTSVHDFAELIFSLI------- 209
K + S N D ++ LTT + ++VA+ +VHDF++ + +++
Sbjct: 135 KNLKLRGMSTNEGSGGDGNLQFPDLTT-ELFVSTYEVAAKAVHDFSKPLINMMKAAGWDL 193
Query: 210 -SSPDHRCPNNADEHSPYKRYSLEAYLSRTMLAVHXXXXXXXXXXXXXXXX--------- 259
S+ + P+ P+K+Y+ E+Y+ + M +
Sbjct: 194 DSAANSIEPDVVYAKRPHKKYAFESYICQRMFSGFQQKNFSVNSESATVMADDDTDTFFR 253
Query: 260 ---IMRCCDPLDALMEHPNSSFARFCRTKYLAAV 290
++ DPLDAL +P+S+ + K V
Sbjct: 254 QFLALKDMDPLDALGTNPDSNVRLYACQKVFVIV 287
>AT5G58960.1 | chr5:23805799-23808360 FORWARD LENGTH=560
Length = 559
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 261 MRCCDPLDALMEHPNSSFARFCRTKYLAAVSSEMEAAMFRNNLDVRAFVSRGGHPRTWFY 320
M+ DP++ L P F +FC KYL+ + +ME ++F ++ + R V G HPR+ FY
Sbjct: 415 MKAMDPMELLGILPTCHFGKFCSKKYLSIIHQKMEESLFGDS-EQRELVVAGNHPRSQFY 473
Query: 321 RAFATMARSAWALRV 335
F +A++ W L +
Sbjct: 474 GEFLGLAKAVWLLHL 488
>AT4G36100.1 | chr4:17082579-17083343 FORWARD LENGTH=237
Length = 236
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 58 VITRLFEEIGALKSTYIKLQKAHIPYNRPKIAFADEIITYELDSVTALQ 106
+I+ LF I +LKS YI+LQ AH PY+ KI AD+++ EL +++ ++
Sbjct: 15 LISNLFGNISSLKSAYIELQSAHTPYDPEKIQAADKVVISELKNLSEMK 63
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.133 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,923,015
Number of extensions: 282076
Number of successful extensions: 807
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 795
Number of HSP's successfully gapped: 11
Length of query: 423
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 322
Effective length of database: 8,337,553
Effective search space: 2684692066
Effective search space used: 2684692066
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 113 (48.1 bits)