BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0121200 Os01g0121200|AK108601
(269 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0121200 RINGv domain containing protein 463 e-131
Os05g0552400 RINGv domain containing protein 173 1e-43
Os02g0577100 RINGv domain containing protein 164 7e-41
Os01g0303600 RINGv domain containing protein 144 5e-35
Os11g0600700 Similar to RING domain protein 137 1e-32
Os08g0436200 RINGv domain containing protein 134 9e-32
Os01g0894600 RINGv domain containing protein 114 6e-26
Os05g0355300 Zinc finger, RING-type domain containing protein 102 2e-22
>Os01g0121200 RINGv domain containing protein
Length = 269
Score = 463 bits (1191), Expect = e-131, Method: Compositional matrix adjust.
Identities = 230/269 (85%), Positives = 230/269 (85%)
Query: 1 MGDHLALLVDRLLTESTLDAAIRKQVADLQAETVAIXXXXXXXXXXXSARKMVECRICQE 60
MGDHLALLVDRLLTESTLDAAIRKQVADLQAETVAI SARKMVECRICQE
Sbjct: 1 MGDHLALLVDRLLTESTLDAAIRKQVADLQAETVAIDYCCDGDGDGGSARKMVECRICQE 60
Query: 61 EDWDTSMEAPCACCGSLKYAHRKCIQRWCNEKGDTVCEICLQQFKPGYTAPQQLFHYGSI 120
EDWDTSMEAPCACCGSLKYAHRKCIQRWCNEKGDTVCEICLQQFKPGYTAPQQLFHYGSI
Sbjct: 61 EDWDTSMEAPCACCGSLKYAHRKCIQRWCNEKGDTVCEICLQQFKPGYTAPQQLFHYGSI 120
Query: 121 PMNFRGNWEIARQDLHDSQIITMVPSERDFMDGYEDYLPIRTRSSTLCCRTVAIIFMSLL 180
PMNFRGNWEIARQDLHDSQIITMVPSERDFMDGYEDYLPIRTRSSTLCCRTVAIIFMSLL
Sbjct: 121 PMNFRGNWEIARQDLHDSQIITMVPSERDFMDGYEDYLPIRTRSSTLCCRTVAIIFMSLL 180
Query: 181 VLRHTLPLMIGGDGEYSLALFSLLVLRTAGILFPILVMVRALATFHXXXXXXXXXXXXXX 240
VLRHTLPLMIGGDGEYSLALFSLLVLRTAGILFPILVMVRALATFH
Sbjct: 181 VLRHTLPLMIGGDGEYSLALFSLLVLRTAGILFPILVMVRALATFHRRRRQQERREMYMT 240
Query: 241 XXXXXXXXXXXXXXPAQPIHSQTRLVPIY 269
PAQPIHSQTRLVPIY
Sbjct: 241 SSDSEEEEDYSDTDPAQPIHSQTRLVPIY 269
>Os05g0552400 RINGv domain containing protein
Length = 252
Score = 173 bits (438), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 131/222 (59%), Gaps = 8/222 (3%)
Query: 1 MGDHLALLVDRLLTESTLDAAIRKQVADLQAETVAIXXXXXXXXXXXSARKMVECRICQE 60
M DH A++ RLLTEST+ +AI + A +V + +VECRICQE
Sbjct: 1 MADHFAVMAGRLLTESTVQSAIDEASAAAMPSSVIASEHNDVQDEREKSGVLVECRICQE 60
Query: 61 EDWDTSMEAPCACCGSLKYAHRKCIQRWCNEKGDTVCEICLQQFKPGYTAPQQLFHYGSI 120
ED T ME PC+C GSLKYAHRKCIQRWC+EKGDT+CEICLQQ+ P YTAP +LF +G
Sbjct: 61 EDDQTYMETPCSCRGSLKYAHRKCIQRWCDEKGDTICEICLQQYTPNYTAPAKLFQHGRN 120
Query: 121 PMNFRGNWEIARQDLHDSQIITMVPSERDFMDGYEDYLPIRTRSSTLCCRTVAIIFMSLL 180
+ FR I Q + ++ + Y+ LP + CR VA+ M LL
Sbjct: 121 SIFFRTPGYIQAQVMQNTDRSAAAST------SYDPELP--NPKGVIYCRIVALTLMVLL 172
Query: 181 VLRHTLPLMIGGDGEYSLALFSLLVLRTAGILFPILVMVRAL 222
+L + + +G Y++A+ +LL+LRTAGI+ P+ +++ +L
Sbjct: 173 LLHDAISVFLGDHDAYTVAMITLLMLRTAGIVIPVYIILLSL 214
>Os02g0577100 RINGv domain containing protein
Length = 250
Score = 164 bits (415), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 84/175 (48%), Positives = 117/175 (66%), Gaps = 4/175 (2%)
Query: 52 MVECRICQEEDWDTSMEAPCACCGSLKYAHRKCIQRWCNEKGDTVCEICLQQFKPGYTAP 111
MVECRICQEED ++E+PCAC GSLKYAHR+C+QRWCNEKGD +CEIC +KPGYTAP
Sbjct: 29 MVECRICQEEDLAKNLESPCACSGSLKYAHRECVQRWCNEKGDIICEICHVSYKPGYTAP 88
Query: 112 QQLFHYGSIPMNFRGNWEIA--RQDLHDSQIITMVPSERDFM-DGYEDYLPIRTRSSTLC 168
Q+ H + G+W I+ R DLHD +I+ M ++ + D Y++Y ++
Sbjct: 89 PQVHHDETTIEISSGDWSISGNRLDLHDPRILAMAAAQHRLLEDEYDEYTATNNNAAAF- 147
Query: 169 CRTVAIIFMSLLVLRHTLPLMIGGDGEYSLALFSLLVLRTAGILFPILVMVRALA 223
CR++ +I M+LL+LRHTL + D + + A+FSL +LR AG L P +M A++
Sbjct: 148 CRSIFLILMALLLLRHTLTITSSDDEDDASAIFSLFLLRAAGFLLPCYIMAWAIS 202
>Os01g0303600 RINGv domain containing protein
Length = 220
Score = 144 bits (364), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 112/176 (63%), Gaps = 10/176 (5%)
Query: 52 MVECRICQEEDWD--TSMEAPCACCGSLKYAHRKCIQRWCNEKGDTVCEICLQQFKPGYT 109
M +CRIC EE+ + T+ME+PC C GSLKYAHR C+QRWC+EKG T+CEICLQ F+PGYT
Sbjct: 12 MRQCRICHEEEEEGCTAMESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQNFEPGYT 71
Query: 110 APQQLFHYGSIPMNFRGNWEIARQDLHDSQIITMVPSERDFMDGYEDYLPIRTRSSTLCC 169
AP + + + R + E+ R T + E+D Y + RS+T C
Sbjct: 72 APPKKAQPAHVAVTIRESLEVPRPSYEPED--TPLIGEQD----YAECAGAAGRSATW-C 124
Query: 170 RTVAIIFMSLLVLRHTLPLM-IGGDGEYSLALFSLLVLRTAGILFPILVMVRALAT 224
R+VA+ F ++L+LRH + ++ +G +Y+ +L ++ +LR +GIL P V++R ++T
Sbjct: 125 RSVAVTFTAVLLLRHLVAVVTVGAAHQYAFSLLTIYLLRASGILLPFYVVMRLIST 180
>Os11g0600700 Similar to RING domain protein
Length = 278
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 120/233 (51%), Gaps = 17/233 (7%)
Query: 1 MGDHLALLVDRLLTESTLDAAIRKQVADLQAETVAIXXXXXXXXXXXSAR-------KMV 53
MGDH+ + V+ L + A+ K + + VA +
Sbjct: 1 MGDHVVVNVEGLGNDG---GAVEKPSEAVNSSVVAAASLSTTVDTVEEGGGEEEPLIQAA 57
Query: 54 ECRICQEEDWDTSMEAPCACCGSLKYAHRKCIQRWCNEKGDTVCEICLQQFKPGYTAPQQ 113
ECRICQEED ++E PCAC GSLKYAHR C+QRWCNEKGD CEIC +Q+K GYTAP +
Sbjct: 58 ECRICQEEDSIKNLEKPCACSGSLKYAHRACVQRWCNEKGDITCEICHEQYKHGYTAPPR 117
Query: 114 LFHYGSIPMNFRGNWEIARQDLHDSQIITMVPSERDFMDGYEDYLPIRTRSSTLCCRTVA 173
+ +I ++ G+W D +II + ++R ++ D S CR+ A
Sbjct: 118 VEPDDTI-IDIGGDW------ARDPRIIAVAAAQRRLLETEYDEYAGTDASGAAFCRSAA 170
Query: 174 IIFMSLLVLRHTLPLMIGGDGEYSLALFSLLVLRTAGILFPILVMVRALATFH 226
+I M+LL+LRH L + + + +FSL +LR AG L P +M + H
Sbjct: 171 LILMALLLLRHALSISDNEGDDDASTMFSLFLLRAAGFLLPCYIMAWIFSILH 223
>Os08g0436200 RINGv domain containing protein
Length = 276
Score = 134 bits (336), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 110/175 (62%), Gaps = 8/175 (4%)
Query: 51 KMVECRICQEEDWDTSMEAPCACCGSLKYAHRKCIQRWCNEKGDTVCEICLQQFKPGYTA 110
+ VECRICQEED +++E+PCAC GSLKYAHR C+QRWC+EKGD CEIC + +K GYTA
Sbjct: 57 QTVECRICQEEDNISNLESPCACTGSLKYAHRACVQRWCDEKGDLTCEICHEPYKHGYTA 116
Query: 111 PQQLFHYGSIPMNFRGNWEIARQ--DLHDSQIITMVPSERDFMDG-YEDYLPIRTRSSTL 167
+ H ++ G W I DLHD +II M ++ M+ Y+DY + SS
Sbjct: 117 LPRA-HPDETTIDISGGWTITGTAFDLHDPRIIAM--AQNHIMEADYDDY-SVTNASSAA 172
Query: 168 CCRTVAIIFMSLLVLRHTLPLMIGGDGEYSLALFSLLVLRTAGILFPILVMVRAL 222
CR+ A+I M+LLVLRH L ++ D + + ++F L +LR G L P +M A+
Sbjct: 173 FCRSAALILMALLVLRHVL-VLTDEDEDDASSMFLLFLLRVTGFLLPFYIMAWAI 226
>Os01g0894600 RINGv domain containing protein
Length = 219
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 96/178 (53%), Gaps = 1/178 (0%)
Query: 49 ARKMVECRICQEEDWDTSMEAPCACCGSLKYAHRKCIQRWCNEKGDTVCEICLQQFKPGY 108
+ M+ECRICQEE + +M++PCAC G+LK+AHRKCIQRWC++KG+ CEIC Q + P Y
Sbjct: 36 GKGMIECRICQEEGDEGAMDSPCACTGTLKFAHRKCIQRWCDKKGNITCEICNQVYSPNY 95
Query: 109 TAPQQLFHYGSIPMNFRGNWEIARQDLHDSQIITMVPSERDFMDGYEDYLPIRTRSSTLC 168
P + M+ R +W + R D HDS + + +E+ + D S C
Sbjct: 96 VLPPTKCCSAEMDMDLRQSW-VGRIDPHDSHFLAIAIAEQQLLQAEFDDCVSSNSSGATC 154
Query: 169 CRTVAIIFMSLLVLRHTLPLMIGGDGEYSLALFSLLVLRTAGILFPILVMVRALATFH 226
CRTV +I M LL++RH + + + L+ AG P V+ R+ F
Sbjct: 155 CRTVVLILMLLLLVRHVVVFVRDVSMLQDATVLFSATLQFAGFFLPCYVIARSCYAFQ 212
>Os05g0355300 Zinc finger, RING-type domain containing protein
Length = 213
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 9/167 (5%)
Query: 57 ICQEED--WDTSMEAPCACCGSLKYAHRKCIQRWCNEKGDTVCEICLQQFKPGYTAPQQL 114
IC EE+ W ++E+PC C GSLKYAHR C+QRWC+EKG T+CEICLQ F+ YT P +
Sbjct: 8 ICHEEEDEWCAAIESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQNFESDYTIPPKK 67
Query: 115 FHYGSIPMNFRGNWEIARQDLHDSQIITMVPSERDFMDGYEDYLPIRTRSSTLCCRTVAI 174
+ R + D +++ S+ D + CR++ I
Sbjct: 68 VQVVETAVTVRAFF------CRDEEMLPEELSQEDQEQYAGSEAQTGNGDCSSWCRSLTI 121
Query: 175 IFMSLLVLRHTLPLM-IGGDGEYSLALFSLLVLRTAGILFPILVMVR 220
F +L++ H + ++ I + +L ++ +LR AGIL P ++R
Sbjct: 122 TFTIMLLVWHLIAVVTIEAADHCAFSLVTIFLLRAAGILLPFYAIMR 168
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.139 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,617,781
Number of extensions: 282680
Number of successful extensions: 868
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 859
Number of HSP's successfully gapped: 8
Length of query: 269
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 170
Effective length of database: 11,866,615
Effective search space: 2017324550
Effective search space used: 2017324550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 155 (64.3 bits)