BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0632700 Os12g0632700|AK065955
(356 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0632700 Similar to Malate dehydrogenase, glyoxysomal p... 704 0.0
Os03g0773800 Similar to Malate dehydrogenase, glyoxysomal p... 590 e-169
Os01g0649100 Malate dehydrogenase 439 e-123
Os05g0574400 Similar to Malate dehydrogenase 437 e-123
Os08g0434300 Similar to Malate dehydrogenase precursor (EC ... 412 e-115
Os01g0829800 Similar to Malate dehydrogenase precursor (EC ... 409 e-114
Os07g0630800 Similar to Nodule-enhanced malate dehydrogenase 409 e-114
AK109028 377 e-105
Os02g0105400 Similar to L-lactate dehydrogenase A (EC 1.1.1... 79 8e-15
>Os12g0632700 Similar to Malate dehydrogenase, glyoxysomal precursor (EC
1.1.1.37)
Length = 356
Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/356 (98%), Positives = 349/356 (98%)
Query: 1 MEDXXXXXXXMERLASHLRPPASQMEESPLLRGSNCRAKGAAPGFKVAILGASGGIGQPL 60
MED MERLASHLRPPASQMEESPLLRGSNCRAKGAAPGFKVAILGASGGIGQPL
Sbjct: 1 MEDAAAAARRMERLASHLRPPASQMEESPLLRGSNCRAKGAAPGFKVAILGASGGIGQPL 60
Query: 61 ALLMKMNPLVSVLHLYDVVNTPGVTADISHMNTGAVVRGFLGKPQLENALTGMDLVIIPA 120
ALLMKMNPLVSVLHLYDVVNTPGVTADISHMNTGAVVRGFLGKPQLENALTGMDLVIIPA
Sbjct: 61 ALLMKMNPLVSVLHLYDVVNTPGVTADISHMNTGAVVRGFLGKPQLENALTGMDLVIIPA 120
Query: 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNVISNPVNSTVPIAAEVFKKAGT 180
GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNVISNPVNSTVPIAAEVFKKAGT
Sbjct: 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNVISNPVNSTVPIAAEVFKKAGT 180
Query: 181 YDPKRLLGVTTLDVVRANTFVAEVLGLDPRDVNVPVIGGHAGVTILPLLSQVNPPCSFTS 240
YDPKRLLGVTTLDVVRANTFVAEVLGLDPRDVNVPVIGGHAGVTILPLLSQVNPPCSFTS
Sbjct: 181 YDPKRLLGVTTLDVVRANTFVAEVLGLDPRDVNVPVIGGHAGVTILPLLSQVNPPCSFTS 240
Query: 241 EEISYLTTRIQNGGTEVVEAKAGAGSATLSMAYAASKFADACLRGLRGDAGIVECSFVAS 300
EEISYLTTRIQNGGTEVVEAKAGAGSATLSMAYAASKFADACLRGLRGDAGIVECSFVAS
Sbjct: 241 EEISYLTTRIQNGGTEVVEAKAGAGSATLSMAYAASKFADACLRGLRGDAGIVECSFVAS 300
Query: 301 QVTELPFFASKVRLGRCGIEEILSLGPLNEFERAGLEKAKKELAESIQKGVAFINK 356
QVTELPFFASKVRLGRCGIEEILSLGPLNEFERAGLEKAKKELAESIQKGVAFINK
Sbjct: 301 QVTELPFFASKVRLGRCGIEEILSLGPLNEFERAGLEKAKKELAESIQKGVAFINK 356
>Os03g0773800 Similar to Malate dehydrogenase, glyoxysomal precursor (EC
1.1.1.37) (mbNAD-MDH)
Length = 354
Score = 590 bits (1521), Expect = e-169, Method: Compositional matrix adjust.
Identities = 289/347 (83%), Positives = 319/347 (91%), Gaps = 3/347 (0%)
Query: 11 MERLASHLRP-PASQMEESPLLRGSNCRAKGAAPGFKVAILGASGGIGQPLALLMKMNPL 69
+ R+A+HL P P QMEE +R + CRAKG APGFKVA+LGA+GGIGQPL+LLMK+NPL
Sbjct: 10 IARVAAHLSPSPRPQMEEG--VRPAPCRAKGGAPGFKVAVLGAAGGIGQPLSLLMKLNPL 67
Query: 70 VSVLHLYDVVNTPGVTADISHMNTGAVVRGFLGKPQLENALTGMDLVIIPAGVPRKPGMT 129
VSVLHLYDVVNTPGVTAD+SHM+T AVVRGFLG QLE ALTGMDLVIIPAG+PRKPGMT
Sbjct: 68 VSVLHLYDVVNTPGVTADVSHMDTTAVVRGFLGPNQLEAALTGMDLVIIPAGLPRKPGMT 127
Query: 130 RDDLFNINAGIVRTLCEGIAKCCPNAIVNVISNPVNSTVPIAAEVFKKAGTYDPKRLLGV 189
RDDLFN NAGIVR+LCEG+AKCCPNAIVN+ISNPVNSTVPIAAEVFKKAGTYDPKRLLGV
Sbjct: 128 RDDLFNKNAGIVRSLCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGV 187
Query: 190 TTLDVVRANTFVAEVLGLDPRDVNVPVIGGHAGVTILPLLSQVNPPCSFTSEEISYLTTR 249
TTLDV RANTFVAEVLG+DP+DVNVPV+GGHAGVTILPLLSQV+PPCSFT +EISYLT R
Sbjct: 188 TTLDVARANTFVAEVLGIDPKDVNVPVVGGHAGVTILPLLSQVHPPCSFTPDEISYLTKR 247
Query: 250 IQNGGTEVVEAKAGAGSATLSMAYAASKFADACLRGLRGDAGIVECSFVASQVTELPFFA 309
IQNGGTEVVEAKAGAGSATLSMA+AA+KF DACLR +RGDAG+VECS+VAS VTELPFFA
Sbjct: 248 IQNGGTEVVEAKAGAGSATLSMAFAAAKFGDACLRAMRGDAGVVECSYVASAVTELPFFA 307
Query: 310 SKVRLGRCGIEEILSLGPLNEFERAGLEKAKKELAESIQKGVAFINK 356
+KVRLGR G EE+L LGPLN+FERAGLE AKKEL ESIQKG+ F+NK
Sbjct: 308 TKVRLGRAGAEEVLPLGPLNDFERAGLEMAKKELMESIQKGIDFMNK 354
>Os01g0649100 Malate dehydrogenase
Length = 340
Score = 439 bits (1129), Expect = e-123, Method: Compositional matrix adjust.
Identities = 222/339 (65%), Positives = 258/339 (76%), Gaps = 1/339 (0%)
Query: 18 LRPPASQMEESPLLRGSNCRAKGAAPGFKVAILGASGGIGQPLALLMKMNPLVSVLHLYD 77
+RP + L R + P KVAILGA+GGIGQPL+LLMK+NPLVS L LYD
Sbjct: 1 MRPSLMRSASQVLRRRRGYSSASGQPERKVAILGAAGGIGQPLSLLMKLNPLVSSLSLYD 60
Query: 78 VVNTPGVTADISHMNTGAVVRGFLGKPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNIN 137
+ TPGV AD+SH+N A V+GF+G QL AL G D+VIIPAGVPRKPGMTRDDLFNIN
Sbjct: 61 IAGTPGVAADVSHINAPAQVKGFMGDDQLGEALEGSDIVIIPAGVPRKPGMTRDDLFNIN 120
Query: 138 AGIVRTLCEGIAKCCPNAIVNVISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTTLDVVRA 197
AGIV+ LC IAK CPNA+VN+ISNPVNSTVPIAAEVFKKAGTYD K+L GVTTLDVVRA
Sbjct: 121 AGIVKNLCTAIAKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRA 180
Query: 198 NTFVAEVLGLDPRDVNVPVIGGHAGVTILPLLSQVNPPC-SFTSEEISYLTTRIQNGGTE 256
TF A + DVNVPV+GGHAG+TILPL SQ P + + E+I LT R Q+GGTE
Sbjct: 181 KTFYAGKANVPVTDVNVPVVGGHAGITILPLFSQATPATNALSDEDIKALTKRTQDGGTE 240
Query: 257 VVEAKAGAGSATLSMAYAASKFADACLRGLRGDAGIVECSFVASQVTELPFFASKVRLGR 316
VVEAKAG GSATLSMAYA + FA+ACL+GL G +VECSFV S VTELPFFASKV+LG+
Sbjct: 241 VVEAKAGKGSATLSMAYAGAVFANACLKGLNGVPDVVECSFVQSTVTELPFFASKVKLGK 300
Query: 317 CGIEEILSLGPLNEFERAGLEKAKKELAESIQKGVAFIN 355
G+EE+L LG L++FE+ GLE K EL SI+KG+ F N
Sbjct: 301 NGVEEVLGLGQLSDFEKEGLENLKGELKASIEKGIKFAN 339
>Os05g0574400 Similar to Malate dehydrogenase
Length = 340
Score = 437 bits (1125), Expect = e-123, Method: Compositional matrix adjust.
Identities = 218/309 (70%), Positives = 252/309 (81%), Gaps = 1/309 (0%)
Query: 46 KVAILGASGGIGQPLALLMKMNPLVSVLHLYDVVNTPGVTADISHMNTGAVVRGFLGKPQ 105
KVAILGA+GGIGQPLALLMK+NPLVS L LYD+ TPGV AD+SH+N+ A+V+GF+G+ Q
Sbjct: 28 KVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIAGTPGVAADVSHINSPALVKGFVGEEQ 87
Query: 106 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNVISNPVN 165
L AL G D+VIIPAGVPRKPGMTRDDLFNINAGIV+ LC I+K CPNA+VN+ISNPVN
Sbjct: 88 LGEALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKGLCTAISKYCPNALVNMISNPVN 147
Query: 166 STVPIAAEVFKKAGTYDPKRLLGVTTLDVVRANTFVAEVLGLDPRDVNVPVIGGHAGVTI 225
STVPIAAEVFKKAGTYD K+L GVTTLDVVRA TF A + +VNVPV+GGHAG+TI
Sbjct: 148 STVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVTEVNVPVVGGHAGITI 207
Query: 226 LPLLSQVNPPC-SFTSEEISYLTTRIQNGGTEVVEAKAGAGSATLSMAYAASKFADACLR 284
LPL SQ P + + E+I LT R Q+GGTEVVEAKAG GSATLSMAYA + FADACL+
Sbjct: 208 LPLFSQATPASNALSHEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLK 267
Query: 285 GLRGDAGIVECSFVASQVTELPFFASKVRLGRCGIEEILSLGPLNEFERAGLEKAKKELA 344
GL G +VECSFV S VTELPFFASKVRLG+ G+EE+L LG L+EFE+ GLE K EL
Sbjct: 268 GLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGQLSEFEKEGLENLKGELK 327
Query: 345 ESIQKGVAF 353
SI+KG+ F
Sbjct: 328 SSIEKGIKF 336
>Os08g0434300 Similar to Malate dehydrogenase precursor (EC 1.1.1.37)
Length = 356
Score = 412 bits (1059), Expect = e-115, Method: Compositional matrix adjust.
Identities = 200/314 (63%), Positives = 246/314 (78%), Gaps = 2/314 (0%)
Query: 45 FKVAILGASGGIGQPLALLMKMNPLVSVLHLYDVVNTPGVTADISHMNTGAVVRGFLGKP 104
+KVA+LGA+GGIGQPL LL+KM+PLVS LHLYD+ N GV AD+SH NT + V F G
Sbjct: 35 YKVAVLGAAGGIGQPLGLLIKMSPLVSELHLYDIANVKGVAADLSHCNTPSQVLDFTGPS 94
Query: 105 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNVISNPV 164
+L N L G+D+V+IPAGVPRKPGMTRDDLFNINA IV++L E +A CP A +++ISNPV
Sbjct: 95 ELANCLKGVDVVVIPAGVPRKPGMTRDDLFNINASIVKSLVEAVADNCPEAFIHIISNPV 154
Query: 165 NSTVPIAAEVFKKAGTYDPKRLLGVTTLDVVRANTFVAEVLGLDPRDVNVPVIGGHAGVT 224
NSTVPIAAEV K+ G Y+PK+L GVTTLDVVRANTFVA+ L DV+VPV+GGHAG+T
Sbjct: 155 NSTVPIAAEVLKQKGVYNPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGIT 214
Query: 225 ILPLLSQVNPPCSFTSEEISYLTTRIQNGGTEVVEAKAGAGSATLSMAYAASKFADACLR 284
ILPLLS+ P +FT EE LT RIQN GTEVVEAKAGAGSATLSMAYAA++F ++ LR
Sbjct: 215 ILPLLSKTMPSVTFTDEETEQLTKRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLR 274
Query: 285 GLRGDAGIVECSFVASQVTELPFFASKVRLGRCGIEEILS--LGPLNEFERAGLEKAKKE 342
L GD + EC+FV S++TELPFFAS+V+LG+ G+E I+S L + E+E LE K E
Sbjct: 275 ALAGDPDVYECTFVQSELTELPFFASRVKLGKNGVESIISADLEGVTEYEAKALEALKSE 334
Query: 343 LAESIQKGVAFINK 356
L SI+KG+ F++K
Sbjct: 335 LKASIEKGIEFVHK 348
>Os01g0829800 Similar to Malate dehydrogenase precursor (EC 1.1.1.37)
Length = 396
Score = 409 bits (1052), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/314 (63%), Positives = 246/314 (78%), Gaps = 2/314 (0%)
Query: 45 FKVAILGASGGIGQPLALLMKMNPLVSVLHLYDVVNTPGVTADISHMNTGAVVRGFLGKP 104
+KVA+LGA+GGIGQPL LL+KM+PLVS LHLYD+ N GV AD+SH NT + V F G
Sbjct: 76 YKVAVLGAAGGIGQPLGLLIKMSPLVSALHLYDIANVKGVAADLSHCNTPSQVLDFTGPS 135
Query: 105 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNVISNPV 164
+L N L G+D+V+IPAGVPRKPGMTRDDLFNINA IV+TL E +A CP A +++ISNPV
Sbjct: 136 ELANCLKGVDVVVIPAGVPRKPGMTRDDLFNINASIVKTLVEAVADNCPEAFIHIISNPV 195
Query: 165 NSTVPIAAEVFKKAGTYDPKRLLGVTTLDVVRANTFVAEVLGLDPRDVNVPVIGGHAGVT 224
NSTVPIAAEV K+ G Y+PK+L GVTTLDVVRANTF+A+ L DV+VPV+GGHAG+T
Sbjct: 196 NSTVPIAAEVLKQKGVYNPKKLFGVTTLDVVRANTFIAQKKNLKLIDVDVPVVGGHAGIT 255
Query: 225 ILPLLSQVNPPCSFTSEEISYLTTRIQNGGTEVVEAKAGAGSATLSMAYAASKFADACLR 284
ILPLLS+ P +FT+EE LT RIQN GTEVVEAKAGAGSATLSMAYAA++F ++ LR
Sbjct: 256 ILPLLSKTRPSVTFTNEETEELTRRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLR 315
Query: 285 GLRGDAGIVECSFVASQVTELPFFASKVRLGRCGIEEILS--LGPLNEFERAGLEKAKKE 342
L GD + EC+FV S++TEL FFAS+V+LG+ G+E I+S L + E+E LE K E
Sbjct: 316 ALAGDPDVYECTFVQSELTELLFFASRVKLGKNGVESIISSDLEGVTEYEAKALESLKPE 375
Query: 343 LAESIQKGVAFINK 356
L SI+KG+ F++K
Sbjct: 376 LKASIEKGIEFVHK 389
>Os07g0630800 Similar to Nodule-enhanced malate dehydrogenase
Length = 404
Score = 409 bits (1051), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/327 (64%), Positives = 248/327 (75%), Gaps = 7/327 (2%)
Query: 37 RAKGAAPGFKVAILGASGGIGQPLALLMKMNPLVSVLHLYDVVNTPGVTADISHMNTGAV 96
R A G+KVAILGA+GGIGQPL+LL+KM+PLVS LHLYD+ N GVTAD+ H NT A
Sbjct: 70 RVVAQAGGYKVAILGAAGGIGQPLSLLVKMSPLVSALHLYDIANVDGVTADLGHCNTPAK 129
Query: 97 VRGFLGKPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAI 156
V GF GK +L L G+D+V+IPAGVPRKPGMTRDDLF INAGIVR L E +A P A+
Sbjct: 130 VAGFTGKEELAGCLAGVDVVVIPAGVPRKPGMTRDDLFGINAGIVRELVEAVADHAPAAL 189
Query: 157 VNVISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTTLDVVRANTFVAEVLGLDPRDVNVPV 216
V+VISNPVNSTVPIAAEV K+ G YDP++L GVTTLDVVRANTFVAE+ GL DV+VPV
Sbjct: 190 VHVISNPVNSTVPIAAEVLKRKGVYDPRKLFGVTTLDVVRANTFVAEMKGLPLADVDVPV 249
Query: 217 IGGHAGVTILPLLSQVNPPCSFTSEEISYLTTRIQNGGTEVVE--AKAGAGSATLSMAYA 274
+GGHA TILPLLS+ P +FT EE+ LT RIQN GTEVVE AKAG GSATLSMAYA
Sbjct: 250 VGGHAAATILPLLSKARPKTAFTDEEVEALTRRIQNAGTEVVEAKAKAGGGSATLSMAYA 309
Query: 275 ASKFADACLRGLRGDAGIVECSFVASQ-VTELPFFASKVRLGRCGIEEILSLGP----LN 329
A++F +A LRGL GDA + ECS+V Q V ELPFFA +V+LGR G+EE+ + G L
Sbjct: 310 AARFLEASLRGLDGDADVYECSYVQCQAVPELPFFACRVKLGRDGVEEVAAAGAELRGLT 369
Query: 330 EFERAGLEKAKKELAESIQKGVAFINK 356
EFE LE K +L +SI KGVA+ +
Sbjct: 370 EFEARALEALKPQLKKSIDKGVAYAQQ 396
>AK109028
Length = 345
Score = 377 bits (968), Expect = e-105, Method: Compositional matrix adjust.
Identities = 201/318 (63%), Positives = 240/318 (75%), Gaps = 3/318 (0%)
Query: 41 AAPGFKVAILGASGGIGQPLALLMKMNPLVSVLHLYDVVNTPGVTADISHMNTGAVVRGF 100
AA KVA+LGA+GGIGQPL+LLMKMNP VS L LYDV T GV AD+SH+N+ A V+G+
Sbjct: 28 AAKERKVAVLGAAGGIGQPLSLLMKMNPQVSQLSLYDVAGTRGVGADVSHINSRAQVKGY 87
Query: 101 LGKPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNVI 160
G QL AL G DLVIIPAGVPRKPGMTRDDLF INAGIV+ L E K CP AI+N+I
Sbjct: 88 EGDAQLAEALKGCDLVIIPAGVPRKPGMTRDDLFKINAGIVKGLVEACGKHCPGAILNII 147
Query: 161 SNPVNSTVPIAAEVFKKAGTYDPKRLLGVTTLDVVRANTFVAEVLGLDPRDVNVPVIGGH 220
SNPVNSTVPIAAE KK G YD ++++GVTTLDVVRA TF AE LGLD V+VPV+GGH
Sbjct: 148 SNPVNSTVPIAAEALKKMGVYDKRKVMGVTTLDVVRAKTFYAEKLGLDVGQVDVPVVGGH 207
Query: 221 AGVTILPLLSQVNP--PCSFTSEEISYLTTRIQNGGTEVVEAKAGAGSATLSMAYAASKF 278
AG+TILPL SQ P P + ++E I LT R Q+GGTEVVEAKAG GSATLSMAYAA+ F
Sbjct: 208 AGITILPLFSQATPTMPSNTSAEVIEALTKRTQDGGTEVVEAKAGKGSATLSMAYAAALF 267
Query: 279 ADACLRGLRGDAGIVECSFVASQVTELPFFASKVRLGRCGIEEILSLGPLNEFERAGLEK 338
ADACLRG+ G A EC+FV S VT+LP+FA+KV+LG G+E I +G ++ +E+
Sbjct: 268 ADACLRGMNG-ATATECTFVESDVTDLPYFATKVKLGTEGVETIQPVGSMSAYEQEAYNA 326
Query: 339 AKKELAESIQKGVAFINK 356
EL SI+KG+ F+ +
Sbjct: 327 LTPELQASIEKGIKFVRE 344
>Os02g0105400 Similar to L-lactate dehydrogenase A (EC 1.1.1.27) (LDH-A)
Length = 392
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 84/327 (25%), Positives = 148/327 (45%), Gaps = 42/327 (12%)
Query: 46 KVAILGASGGIGQPLALLMKMNPLVSVLHLYDVV--NTPGVTADISHMNTGAVVRGFLGK 103
K++++GA G +G +A + + + L D V G D+ H FL +
Sbjct: 80 KISVIGA-GNVGMAIAQTILTRDMADEIALVDAVPDKLRGEMLDLQH------AAAFLPR 132
Query: 104 PQL----ENALT-GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVN 158
+L + A+T G DL I+ AG + PG +R +L N + R + +A+ P A++
Sbjct: 133 VRLVSDTDLAVTRGSDLAIVTAGARQIPGESRLNLLQRNVALFRKIVPALAEHSPEALLL 192
Query: 159 VISNPVNSTVPIAAEVFKKAGTYDPKRLLGV-TTLDVVRANTFVAEVLGLDPRDVNVPVI 217
++SNPV+ +A +K +G + R++G T LD R +AE L ++ +DV ++
Sbjct: 193 IVSNPVDVLTYVA---WKLSG-FPASRVIGSGTNLDSSRFRFLLAEHLQVNAQDVQAYMV 248
Query: 218 GGHAGVTI----------LPLLSQVNPPC-SFTSEEISYLTTRIQNGGTEVVEAKAGAGS 266
G H ++ +P+L + SF E + + + + EV+ K G
Sbjct: 249 GEHGDSSVAIWSSMSVAGMPVLKSLRESHQSFDEEALEGIRRAVVDSAYEVISLK---GY 305
Query: 267 ATLSMAYAASKFADACLRGLRGDAGIVECSFVASQVTELP-----FFASKVRLGRCGIEE 321
+ ++ Y+ + A + LR I S +AS +P F + RLGR G+
Sbjct: 306 TSWAIGYSVASLAASL---LRDQHRIHPVSVLASGFHGIPQDHEVFLSLPARLGRAGVLG 362
Query: 322 ILSLGPLNEFERAGLEKAKKELAESIQ 348
+ + L E E L ++ K L E+ Q
Sbjct: 363 VAEM-ELTEEEARRLRRSAKTLWENCQ 388
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.136 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,588,129
Number of extensions: 488785
Number of successful extensions: 1216
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 1207
Number of HSP's successfully gapped: 12
Length of query: 356
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 254
Effective length of database: 11,709,973
Effective search space: 2974333142
Effective search space used: 2974333142
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)