Os01g0649100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Malate dehydrogenase.
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Os01g0649100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Malate dehydrogenase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.96 | 0.286 | 12.5 | -0.583 | 0.301 | -0.595 | 0.65 | -0.253 | -0.336 | 21.4 | 66.76 | 16427 | -- | -- |
| 37.01 | 0.283 | 12.5 | -0.639 | 0.329 | -0.612 | 0.668 | -- | -0.35 | 21.3 | 67.64 | 16114 | -- | -- |
| 38.41 | 0.289 | 12.5 | -0.591 | 0.299 | -0.593 | -- | -0.339 | -0.336 | 21 | 67.17 | 16529 | -- | -- |
| 38.5 | 0.289 | 12.5 | -0.667 | 0.339 | -0.618 | -- | -- | -0.34 | 21.1 | 70.47 | 16015 | -- | -- |
| 43.3 | 0.306 | 12.5 | -0.596 | -- | -0.64 | -- | -0.379 | -0.352 | -- | 67.74 | 16606 | -- | -- |
| 45.47 | 0.316 | 12.5 | -0.667 | 0.342 | -- | 0.677 | -- | -0.165 | 21.4 | -- | -- | -- | -- |
| 47.1 | 0.321 | 12.5 | -0.691 | 0.342 | -- | -- | -- | -0.165 | 21.1 | -- | -- | -- | -- |
| 43.48 | 0.307 | 12.5 | -0.678 | -- | -0.662 | -- | -- | -0.379 | -- | 68.8 | 16584 | -- | -- |
| 50.13 | 0.33 | 12.5 | -- | 0.317 | -0.53 | -- | -- | -0.236 | 21 | 65.59 | 16141 | -- | -- |
| 53.86 | 0.343 | 12.4 | -0.69 | -- | -- | -- | -- | -0.167 | -- | -- | -- | -- | -- |
| 59.68 | 0.361 | 12.4 | -- | 0.343 | -- | -- | -- | -0.0881 | 21 | -- | -- | -- | -- |
| 54.1 | 0.343 | 12.5 | -- | -- | -0.721 | -- | -- | -0.32 | -- | 59.76 | 16545 | -- | -- |
| 66.42 | 0.38 | 12.4 | -- | -- | -- | -- | -- | -0.0904 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.57 | wind | 9 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 4 | 36.74 | wind | 1 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 5 | 37.06 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 3 |
| 7 | 37.12 | humidity | 80 | 14400 | > th | dose independent | rect. | 13 | 11 |
| 17 | 37.23 | humidity | 80 | 14400 | > th | dose independent | sin | 17 | NA |
| 19 | 37.24 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 16 |
| 21 | 37.25 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 14 |
| 29 | 37.28 | humidity | 80 | 14400 | < th | dose independent | rect. | 13 | 11 |
| 63 | 37.36 | wind | 3 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 75 | 37.38 | humidity | 80 | 14400 | < th | dose independent | rect. | 10 | 16 |
| 80 | 37.40 | humidity | 80 | 14400 | < th | dose independent | sin | 17 | NA |
| 129 | 37.51 | wind | 3 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 137 | 37.52 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 146 | 37.53 | radiation | 30 | 4320 | < th | dose independent | rect. | 14 | 18 |
| 147 | 37.53 | radiation | 30 | 4320 | > th | dose dependent | rect. | 14 | 18 |
| 148 | 37.54 | humidity | 80 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 154 | 37.54 | humidity | 70 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 159 | 37.55 | humidity | 80 | 14400 | > th | dose independent | rect. | 5 | 19 |
| 176 | 37.57 | humidity | 50 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 179 | 37.58 | wind | 3 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 215 | 37.61 | humidity | 80 | 14400 | > th | dose independent | rect. | 21 | 23 |
| 221 | 37.62 | humidity | 80 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 233 | 37.63 | humidity | 80 | 14400 | > th | dose independent | rect. | 13 | 23 |
| 263 | 37.67 | humidity | 80 | 14400 | > th | dose independent | no | NA | NA |
| 264 | 37.67 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 265 | 37.67 | humidity | 70 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 281 | 37.67 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 305 | 37.69 | temperature | 30 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 314 | 37.69 | humidity | 80 | 14400 | > th | dose dependent | rect. | 18 | 7 |
| 318 | 37.70 | humidity | 80 | 14400 | > th | dose independent | rect. | 16 | 23 |
| 322 | 37.71 | temperature | 30 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 323 | 37.71 | temperature | 30 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 334 | 37.71 | humidity | 80 | 14400 | > th | dose dependent | rect. | 17 | 18 |
| 371 | 37.73 | humidity | 70 | 14400 | > th | dose dependent | rect. | 14 | 12 |
| 398 | 37.74 | humidity | 70 | 14400 | > th | dose dependent | rect. | 13 | 20 |
| 427 | 37.76 | humidity | 70 | 14400 | > th | dose dependent | sin | 15 | NA |
| 450 | 37.78 | humidity | 80 | 14400 | < th | dose independent | rect. | 21 | 23 |
| 515 | 37.82 | humidity | 80 | 14400 | < th | dose independent | rect. | 13 | 23 |
| 518 | 37.82 | radiation | 30 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 520 | 37.82 | radiation | 30 | 4320 | > th | dose dependent | rect. | 14 | 3 |
| 543 | 37.82 | humidity | 70 | 14400 | > th | dose dependent | rect. | 17 | 22 |
| 565 | 37.83 | humidity | 70 | 14400 | > th | dose dependent | rect. | 20 | 23 |
| 586 | 37.84 | humidity | 70 | 14400 | > th | dose dependent | rect. | 4 | 22 |
| 592 | 37.85 | humidity | 80 | 14400 | < th | dose independent | no | NA | NA |
| 600 | 37.85 | humidity | 70 | 14400 | > th | dose dependent | no | NA | NA |
| 612 | 37.85 | humidity | 70 | 14400 | > th | dose dependent | rect. | 8 | 23 |
| 665 | 37.87 | humidity | 70 | 14400 | > th | dose dependent | rect. | 1 | 23 |
| 674 | 37.88 | humidity | 80 | 14400 | < th | dose independent | rect. | 16 | 23 |
| 760 | 37.91 | humidity | 90 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 768 | 37.91 | humidity | 70 | 14400 | > th | dose dependent | rect. | 20 | 19 |
| 775 | 37.92 | wind | 3 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 814 | 37.94 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 975 | 38.01 | radiation | 40 | 4320 | < th | dose independent | rect. | 14 | 6 |