FiT-DB / Search/ Help/ Sample detail

Os07g0630800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Nodule-enhanced malate dehydrogenase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.2 (0.0348) R2 : 0.918
β1 : -1.94 (0.127) R2dD : 0.0435 R2D : 0.0225
β2 : 6.67 (0.0973) R2dC : 0.997 R2C : 0.659
β3 : 2.73 (0.0931) R2dE : 0.182 R2E : -0.14
β4 : 4.51 (0.406) R2dD*C : 0.0231 R2D*C : 0.0211
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.749 (0.0741) R2dN8 : 0.0249 R2N8 : 0.0021
σ : 0.649
deviance : 194.19
__
_____
C
peak time of C : 6.89
E
wheather : radiation
threshold : 0.7029
memory length : 284
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 8.92
open length of G : 7.08

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
192.63 0.652 12.2 -1.95 6.68 2.76 4.85 0.87 -0.742 6.85 0.7198 273 8.98 7.07
194.19 0.649 12.2 -1.94 6.67 2.73 4.51 -- -0.749 6.89 0.7029 284 8.92 7.08
247.57 0.733 12.2 -1.88 6.56 2.65 -- 0.317 -0.77 6.88 2.04 276 8.97 6.95
245.18 0.729 12.2 -1.82 6.55 2.77 -- -- -0.784 6.89 2.206 294 8.83 6.87
1777.28 1.97 12.4 -1.66 -- 2.19 -- 1.05 -0.698 -- 2.04 276 8.97 6.95
277.5 0.781 12.2 -1.86 5.91 -- 3.98 -- -0.776 8.29 -- -- -- --
326.66 0.846 12.2 -1.74 5.9 -- -- -- -0.777 8.3 -- -- -- --
585.32 1.13 12.3 -0.286 -- 5.89 -- -- -0.347 -- -72.73 389 0.0166 11
328.66 0.844 12.2 -- 6.7 2.97 -- -- -0.534 6.76 -7.893 309 8.62 7.02
2257.36 2.22 12.4 -1.7 -- -- -- -- -0.713 -- -- -- -- --
406.54 0.943 12.2 -- 5.89 -- -- -- -0.583 8.33 -- -- -- --
493.25 1.03 12.3 -- -- 4.52 -- -- -0.386 -- -99.46 312 0.0167 11.8
2333.84 2.25 12.3 -- -- -- -- -- -0.524 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 193.51 radiation 1.0 270 > th dose independent rect. 9 7
2 195.77 wind 9.0 270 < th dose independent rect. 5 15
3 195.78 wind 9.0 270 < th dose independent rect. 16 17
4 196.52 atmosphere 995.0 270 > th dose independent rect. 16 17
5 196.82 precipitation 0.1 270 < th dose independent rect. 9 7
6 196.82 precipitation 0.1 270 < th dose dependent rect. 9 7
7 197.02 temperature 15.0 270 > th dose independent rect. 9 7
9 197.44 atmosphere 1015.0 270 < th dose independent rect. 9 7
10 197.44 temperature 10.0 270 > th dose independent rect. 16 17
11 198.21 radiation 1.0 270 > th dose independent rect. 10 5
12 198.22 wind 9.0 270 < th dose independent rect. 20 9
14 198.34 radiation 1.0 270 < th dose independent rect. 20 9
16 198.34 radiation 10.0 270 < th dose dependent rect. 20 9
20 198.38 temperature 10.0 270 > th dose independent rect. 20 9
21 198.38 temperature 30.0 270 < th dose independent rect. 20 9
22 198.38 humidity 50.0 270 > th dose independent rect. 20 9
25 198.38 atmosphere 995.0 270 > th dose independent rect. 20 9
29 198.38 temperature 10.0 270 > th dose independent rect. 5 15
30 198.38 atmosphere 1015.0 270 < th dose independent rect. 5 15
33 199.08 radiation 40.0 270 < th dose independent rect. 16 17
34 199.25 wind 9.0 270 < th dose independent rect. 9 7
35 199.37 humidity 90.0 270 < th dose independent rect. 10 5
36 199.83 wind 9.0 270 < th dose independent rect. 15 19
37 200.63 temperature 20.0 270 > th dose independent rect. 15 7
40 201.24 temperature 15.0 270 > th dose independent rect. 10 5
41 201.34 precipitation 0.1 270 < th dose independent rect. 10 5
42 201.34 precipitation 0.1 270 < th dose dependent rect. 10 5
45 201.89 atmosphere 1015.0 270 < th dose independent rect. 10 5
46 201.89 temperature 10.0 270 > th dose independent rect. 15 19
49 202.10 atmosphere 995.0 270 > th dose independent rect. 15 19
51 202.28 precipitation 0.1 270 < th dose independent rect. 10 17
52 202.28 precipitation 0.1 270 < th dose dependent rect. 10 17
53 202.43 precipitation 0.1 270 < th dose independent rect. 20 9
54 202.43 precipitation 0.1 270 < th dose dependent rect. 20 9
56 202.60 atmosphere 995.0 270 > th dose independent rect. 9 7
57 202.74 wind 9.0 270 < th dose independent rect. 10 5
60 202.95 wind 1.0 270 > th dose independent rect. 9 7
61 203.35 atmosphere 995.0 270 > th dose independent rect. 10 5
81 203.57 humidity 50.0 270 > th dose independent rect. 16 17
89 204.31 atmosphere 995.0 270 > th dose independent rect. 5 15
121 205.18 wind 1.0 270 > th dose independent rect. 15 7
124 205.36 temperature 10.0 270 > th dose independent rect. 3 7
125 205.36 atmosphere 995.0 270 > th dose independent rect. 3 7
126 205.36 atmosphere 1015.0 270 < th dose independent rect. 3 7
127 205.36 temperature 10.0 270 > th dose independent rect. 10 17
129 205.40 wind 9.0 270 < th dose independent rect. 3 7
131 205.43 temperature 10.0 270 > th dose dependent rect. 15 8
136 205.57 wind 9.0 270 < th dose independent rect. 15 7
137 205.61 humidity 50.0 270 > th dose independent rect. 3 7
149 206.07 wind 1.0 270 > th dose independent rect. 10 5
150 206.07 precipitation 0.1 270 < th dose independent rect. 22 17
151 206.07 precipitation 0.1 270 < th dose dependent rect. 22 17
154 206.34 radiation 40.0 270 < th dose independent rect. 15 19
161 206.63 atmosphere 1015.0 270 < th dose independent rect. 16 17
186 207.10 radiation 40.0 270 < th dose independent rect. 15 7
189 207.24 humidity 50.0 270 > th dose independent rect. 10 5
194 207.66 precipitation 0.1 270 < th dose independent rect. 16 17
195 207.66 precipitation 0.1 270 < th dose dependent rect. 16 17
196 207.69 temperature 10.0 270 > th dose independent rect. 15 7
197 207.69 temperature 10.0 270 > th dose independent rect. 22 17
207 208.06 atmosphere 995.0 270 > th dose independent rect. 4 17
210 208.35 atmosphere 1015.0 270 < th dose independent rect. 15 7
211 208.38 wind 9.0 270 < th dose independent rect. 10 17
218 208.51 precipitation 0.1 270 < th dose independent rect. 3 7
220 208.51 precipitation 0.1 270 < th dose dependent rect. 3 7
223 208.66 atmosphere 1015.0 270 < th dose independent rect. 15 19
224 208.82 wind 9.0 270 < th dose independent rect. 22 17
229 209.00 atmosphere 995.0 270 > th dose independent rect. 15 7
230 209.10 atmosphere 995.0 270 > th dose independent rect. 22 17
255 209.96 temperature 10.0 270 > th dose dependent rect. 10 5
283 210.93 radiation 40.0 270 < th dose dependent rect. 16 17
286 211.06 humidity 50.0 270 > th dose independent rect. 9 7
297 211.43 precipitation 0.1 270 < th dose independent rect. 15 19
299 211.43 precipitation 0.1 270 < th dose dependent rect. 15 19
307 211.85 temperature 30.0 270 < th dose independent rect. 3 7
321 212.27 radiation 40.0 270 < th dose independent rect. 3 7
370 213.37 precipitation 0.1 270 < th dose independent rect. 5 15
371 213.37 precipitation 0.1 270 < th dose dependent rect. 5 15
441 214.71 humidity 50.0 270 > th dose independent rect. 22 17
461 215.22 precipitation 0.1 270 < th dose independent rect. 15 7
462 215.22 precipitation 0.1 270 < th dose dependent rect. 15 7
480 215.60 precipitation 0.1 270 < th dose independent rect. 4 17
481 215.60 precipitation 0.1 270 < th dose dependent rect. 4 17
483 215.62 radiation 40.0 270 < th dose dependent rect. 15 6
505 215.94 radiation 20.0 10 < th dose dependent rect. 23 8
519 216.22 wind 9.0 270 < th dose dependent rect. 15 6
532 216.46 wind 9.0 270 < th dose dependent rect. 21 7
533 216.47 temperature 10.0 270 > th dose dependent rect. 16 17
551 216.67 atmosphere 1015.0 270 < th dose independent rect. 22 17
630 217.51 radiation 40.0 90 < th dose dependent rect. 15 8
659 218.23 radiation 1.0 270 < th dose dependent sin 11 NA
666 218.37 wind 9.0 270 < th dose dependent rect. 3 7
674 218.57 precipitation 0.1 90 < th dose independent rect. 23 6
675 218.57 precipitation 0.1 90 < th dose dependent rect. 23 6
700 218.98 precipitation 0.1 10 < th dose independent rect. 7 16
701 218.98 precipitation 0.1 10 < th dose dependent rect. 7 16
704 219.00 temperature 20.0 30 > th dose independent rect. 18 16
708 219.06 wind 9.0 270 < th dose dependent rect. 10 5
718 219.19 radiation 10.0 10 < th dose independent rect. 23 8
719 219.20 wind 7.0 90 < th dose independent rect. 23 6
734 219.37 temperature 30.0 270 < th dose independent rect. 16 17
755 219.51 temperature 10.0 90 > th dose independent rect. 23 6
756 219.51 temperature 30.0 90 < th dose independent rect. 23 6
757 219.51 humidity 50.0 90 > th dose independent rect. 23 6
760 219.51 atmosphere 995.0 90 > th dose independent rect. 23 6
761 219.51 radiation 20.0 90 < th dose independent rect. 23 6
765 219.52 radiation 1.0 90 < th dose independent rect. 23 6
768 219.52 radiation 20.0 90 < th dose dependent rect. 23 6
800 219.98 wind 9.0 10 < th dose independent rect. 7 16
802 220.00 humidity 50.0 270 > th dose independent rect. 15 6
823 220.31 wind 1.0 270 > th dose independent rect. 21 7
827 220.38 wind 1.0 270 > th dose independent rect. 23 16
885 220.80 atmosphere 1015.0 270 < th dose independent rect. 21 7
888 220.83 wind 7.0 10 < th dose independent rect. 23 8
907 221.05 atmosphere 995.0 270 > th dose dependent rect. 10 5
916 221.13 temperature 10.0 90 > th dose dependent rect. 18 16
940 221.28 atmosphere 995.0 270 > th dose independent rect. 10 17
942 221.29 temperature 10.0 10 > th dose independent rect. 23 8
943 221.29 temperature 30.0 10 < th dose independent rect. 23 8
944 221.29 humidity 50.0 10 > th dose independent rect. 23 8
947 221.29 atmosphere 995.0 10 > th dose independent rect. 23 8
951 221.29 temperature 10.0 10 > th dose independent rect. 7 16
953 221.29 atmosphere 1015.0 10 < th dose independent rect. 7 16
954 221.34 humidity 50.0 270 > th dose dependent rect. 21 7
956 221.36 wind 1.0 270 > th dose independent rect. 5 16
958 221.37 wind 1.0 90 > th dose independent rect. 5 18
959 221.38 atmosphere 995.0 90 > th dose dependent rect. 16 7
960 221.38 radiation 10.0 270 < th dose dependent rect. 5 15
977 221.51 temperature 10.0 1440 > th dose independent rect. 11 8
981 221.51 temperature 10.0 1440 > th dose independent rect. 19 16
984 221.51 atmosphere 995.0 1440 > th dose independent rect. 19 16
996 221.62 radiation 20.0 10 < th dose dependent sin 16 NA