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Os02g0105400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to L-lactate dehydrogenase A (EC 1.1.1.27) (LDH-A).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.2 (0.0218) R2 : 0.814
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.27 (0.0524) R2dC : 0.77 R2C : 0.765
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.444 (0.0459) R2dN8 : 0.0494 R2N8 : 0.0441
σ : 0.411
deviance : 77.3
__
_____
C
peak time of C : 1.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
67.95 0.387 11.3 -0.121 2.27 3.74 -1.09 -9.83 0.478 1.33 0.2398 285 -- --
71.72 0.394 11.2 0.0201 2.27 1.02 -0.995 -- 0.449 1.34 0.7749 51 -- --
72.69 0.397 11.3 -0.0755 2.28 3.66 -- -10 0.484 1.3 0.5 285 -- --
74.81 0.403 11.2 0.0445 2.27 0.972 -- -- 0.454 1.33 1 271 -- --
381.47 0.91 11.3 -0.167 -- 3.86 -- -9.84 0.518 -- 1.5 679 -- --
73.14 0.401 11.2 0.0466 2.27 -- -0.988 -- 0.447 1.33 -- -- -- --
77.12 0.411 11.2 0.0808 2.27 -- -- -- 0.453 1.3 -- -- -- --
381.48 0.91 11.2 0.0154 -- 1.22 -- -- 0.531 -- 1.094 791 -- --
74.85 0.403 11.2 -- 2.27 0.979 -- -- 0.455 1.34 0.9976 271 -- --
395.87 0.93 11.2 0.17 -- -- -- -- 0.5 -- -- -- -- --
77.3 0.411 11.2 -- 2.27 -- -- -- 0.444 1.3 -- -- -- --
381.49 0.91 11.2 -- -- 1.22 -- -- 0.53 -- 1.065 789 -- --
396.63 0.93 11.2 -- -- -- -- -- 0.481 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 59.35 radiation 1.0 270 > th dose independent rect. 6 9
2 59.53 radiation 1.0 270 > th dose independent sin 2 NA
3 59.54 wind 1.0 270 > th dose independent rect. 4 1
4 59.83 wind 1.0 10 > th dose independent rect. 2 7
5 60.01 radiation 1.0 270 < th dose independent rect. 3 16
6 60.05 wind 1.0 90 > th dose independent rect. 3 5
8 60.06 wind 1.0 270 > th dose independent rect. 3 17
12 60.21 radiation 1.0 270 < th dose dependent rect. 3 16
16 60.50 radiation 1.0 270 < th dose independent sin 2 NA
19 60.57 precipitation 0.1 270 < th dose independent rect. 6 9
20 60.57 precipitation 0.1 270 < th dose dependent rect. 6 9
21 60.60 temperature 15.0 270 > th dose independent rect. 6 9
22 60.62 radiation 40.0 270 < th dose independent rect. 15 15
27 60.78 humidity 50.0 1440 > th dose independent rect. 4 6
29 60.78 atmosphere 1015.0 270 < th dose independent rect. 6 9
30 60.78 temperature 10.0 270 > th dose independent rect. 15 15
33 60.83 atmosphere 995.0 270 > th dose independent rect. 6 9
34 60.83 wind 9.0 270 < th dose independent rect. 15 15
35 60.87 wind 9.0 270 < th dose independent rect. 6 9
41 61.06 wind 7.0 270 < th dose independent rect. 20 6
42 61.08 temperature 15.0 270 > th dose independent rect. 20 6
63 61.17 temperature 10.0 1440 > th dose independent rect. 4 6
66 61.17 atmosphere 995.0 1440 > th dose independent rect. 4 6
67 61.17 atmosphere 1015.0 1440 < th dose independent rect. 4 6
68 61.17 temperature 10.0 1440 > th dose independent rect. 10 18
73 61.18 temperature 30.0 270 < th dose independent rect. 20 6
74 61.18 humidity 50.0 270 > th dose independent rect. 20 6
77 61.18 atmosphere 995.0 270 > th dose independent rect. 20 6
78 61.18 radiation 1.0 270 < th dose independent rect. 20 6
83 61.18 wind 9.0 270 < th dose independent rect. 2 18
84 61.18 temperature 10.0 270 > th dose independent rect. 2 18
85 61.18 atmosphere 1015.0 270 < th dose independent rect. 2 18
86 61.18 radiation 1.0 270 < th dose dependent rect. 20 6
97 61.25 precipitation 0.1 270 < th dose independent rect. 6 20
98 61.25 precipitation 0.1 270 < th dose dependent rect. 6 20
100 61.26 radiation 1.0 270 < th dose dependent sin 2 NA
103 61.28 precipitation 0.1 270 < th dose independent rect. 21 14
104 61.28 precipitation 0.1 270 < th dose dependent rect. 21 14
105 61.31 precipitation 0.1 270 < th dose independent rect. 20 6
107 61.31 precipitation 0.1 270 < th dose dependent rect. 20 6
109 61.32 precipitation 0.1 270 < th dose independent rect. 7 18
110 61.32 precipitation 0.1 270 < th dose dependent rect. 7 18
112 61.34 wind 1.0 270 > th dose independent rect. 11 9
115 61.39 temperature 10.0 270 > th dose dependent rect. 20 5
118 61.42 radiation 10.0 270 < th dose independent rect. 1 6
130 61.53 temperature 15.0 270 > th dose independent rect. 20 15
136 61.55 wind 9.0 270 < th dose dependent rect. 7 8
142 61.61 humidity 50.0 270 > th dose independent rect. 2 18
143 61.61 wind 9.0 270 < th dose dependent rect. 20 6
149 61.66 radiation 10.0 270 < th dose dependent rect. 2 5
154 61.69 wind 9.0 270 < th dose independent rect. 20 15
158 61.71 temperature 30.0 270 < th dose independent rect. 6 9
162 61.74 precipitation 0.1 30 < th dose independent rect. 9 18
163 61.74 precipitation 0.1 30 < th dose dependent rect. 9 18
167 61.76 wind 9.0 270 < th dose independent rect. 11 9
171 61.77 atmosphere 1015.0 270 < th dose independent rect. 11 10
214 61.81 temperature 10.0 270 > th dose independent rect. 11 9
217 61.81 atmosphere 995.0 270 > th dose independent rect. 20 15
226 61.81 radiation 1.0 270 < th dose dependent rect. 3 12
229 61.83 atmosphere 1010.0 270 < th dose independent rect. 1 6
230 61.83 temperature 30.0 270 < th dose independent rect. 20 18
232 61.84 temperature 15.0 270 > th dose independent rect. 7 18
236 61.86 humidity 70.0 270 > th dose independent rect. 1 7
257 61.92 temperature 30.0 270 < th dose independent rect. 20 15
273 61.95 atmosphere 1010.0 270 < th dose independent rect. 2 4
281 61.97 radiation 40.0 10 < th dose independent rect. 3 6
290 62.00 wind 9.0 270 < th dose independent rect. 1 6
291 62.00 temperature 10.0 270 > th dose independent rect. 1 6
293 62.00 temperature 30.0 270 < th dose independent rect. 1 6
294 62.00 humidity 50.0 270 > th dose independent rect. 1 6
296 62.00 atmosphere 995.0 270 > th dose independent rect. 1 6
300 62.01 wind 9.0 270 < th dose independent rect. 2 4
301 62.01 temperature 10.0 270 > th dose independent rect. 2 4
303 62.01 temperature 30.0 270 < th dose independent rect. 2 4
304 62.01 humidity 50.0 270 > th dose independent rect. 2 4
307 62.01 atmosphere 995.0 270 > th dose independent rect. 2 4
313 62.01 humidity 90.0 270 < th dose independent rect. 7 8
314 62.01 temperature 10.0 270 > th dose independent rect. 6 20
327 62.06 wind 7.0 10 < th dose independent rect. 3 6
329 62.06 temperature 10.0 10 > th dose independent rect. 3 6
331 62.06 temperature 30.0 10 < th dose independent rect. 3 6
332 62.06 humidity 50.0 10 > th dose independent rect. 3 6
334 62.06 atmosphere 995.0 10 > th dose independent rect. 3 6
335 62.06 atmosphere 1015.0 10 < th dose independent rect. 3 6
337 62.06 temperature 10.0 10 > th dose independent rect. 9 18
338 62.06 temperature 30.0 270 < th dose independent rect. 6 20
341 62.07 atmosphere 995.0 270 > th dose independent rect. 15 15
360 62.14 wind 1.0 10 > th dose independent rect. 4 17
415 62.22 wind 9.0 4320 < th dose independent rect. 4 5
420 62.22 wind 9.0 270 < th dose independent rect. 7 18
426 62.23 atmosphere 995.0 270 > th dose independent rect. 2 18
430 62.24 radiation 40.0 270 < th dose dependent rect. 15 15
451 62.27 wind 9.0 270 < th dose independent rect. 6 20
482 62.35 precipitation 0.1 270 < th dose independent rect. 2 4
492 62.35 precipitation 0.1 270 < th dose independent rect. 1 6
496 62.35 precipitation 0.1 270 < th dose dependent rect. 2 4
497 62.35 precipitation 0.1 270 < th dose dependent rect. 1 6
509 62.36 atmosphere 995.0 10 > th dose independent rect. 9 18
518 62.37 wind 9.0 10 < th dose independent rect. 9 18
521 62.38 precipitation 0.1 30 < th dose independent rect. 3 6
522 62.38 precipitation 0.1 30 < th dose dependent rect. 3 6
573 62.42 radiation 20.0 14400 < th dose dependent rect. 21 7
578 62.44 wind 1.0 270 > th dose independent rect. 15 15
583 62.45 humidity 50.0 270 > th dose independent rect. 20 15
604 62.50 wind 1.0 10 > th dose independent rect. 2 19
607 62.51 wind 5.0 90 < th dose independent rect. 8 9
608 62.51 atmosphere 995.0 270 > th dose independent rect. 7 18
616 62.53 atmosphere 995.0 270 > th dose independent rect. 6 20
657 62.62 atmosphere 1015.0 270 < th dose independent rect. 15 15
661 62.64 wind 1.0 270 > th dose independent rect. 20 5
674 62.65 wind 9.0 270 < th dose dependent rect. 20 15
684 62.67 humidity 50.0 270 > th dose independent rect. 11 9
739 62.69 humidity 50.0 270 > th dose dependent rect. 20 6
744 62.71 humidity 90.0 10 < th dose dependent rect. 9 5
766 62.75 temperature 30.0 270 < th dose dependent rect. 3 2
791 62.80 temperature 30.0 270 < th dose dependent rect. 1 5
816 62.85 wind 9.0 270 < th dose dependent rect. 7 19
819 62.86 precipitation 0.1 270 < th dose independent rect. 2 18
821 62.86 precipitation 0.1 270 < th dose dependent rect. 2 18
845 62.90 humidity 90.0 270 < th dose independent rect. 9 1
857 62.93 humidity 90.0 90 < th dose dependent rect. 8 7
860 62.94 radiation 20.0 4320 < th dose independent rect. 22 8
862 62.94 atmosphere 1015.0 270 < th dose dependent rect. 3 2
901 63.00 precipitation 0.1 270 < th dose independent rect. 15 15
903 63.00 precipitation 0.1 270 < th dose dependent rect. 15 15
938 63.06 precipitation 0.1 90 < th dose independent rect. 8 10
940 63.06 precipitation 0.1 90 < th dose dependent rect. 8 10
976 63.13 atmosphere 995.0 270 > th dose independent rect. 11 9
982 63.13 radiation 40.0 90 < th dose dependent rect. 15 17