BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0105400 Os02g0105400|AK103257
(392 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0105400 Similar to L-lactate dehydrogenase A (EC 1.1.1... 731 0.0
Os06g0104900 Similar to L-lactate dehydrogenase B (EC 1.1.1... 514 e-146
Os03g0773800 Similar to Malate dehydrogenase, glyoxysomal p... 77 2e-14
Os08g0434300 Similar to Malate dehydrogenase precursor (EC ... 77 2e-14
Os01g0829800 Similar to Malate dehydrogenase precursor (EC ... 76 5e-14
Os12g0632700 Similar to Malate dehydrogenase, glyoxysomal p... 73 4e-13
Os07g0630800 Similar to Nodule-enhanced malate dehydrogenase 73 4e-13
AK109028 72 9e-13
Os01g0649100 Malate dehydrogenase 70 2e-12
Os05g0574400 Similar to Malate dehydrogenase 65 8e-11
>Os02g0105400 Similar to L-lactate dehydrogenase A (EC 1.1.1.27) (LDH-A)
Length = 392
Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/392 (93%), Positives = 366/392 (93%)
Query: 1 MSHKTTIDHFHFHFQERSTSPLAFHPVXXXXXXXXXXXDMKKASSLSELGFDAEGASSGF 60
MSHKTTIDHFHFHFQERSTSPLAFHPV DMKKASSLSELGFDAEGASSGF
Sbjct: 1 MSHKTTIDHFHFHFQERSTSPLAFHPVSEGGRSRSRSRDMKKASSLSELGFDAEGASSGF 60
Query: 61 FRPVADGGSTPTSHRRRLTKISVIGAGNVGMAIAQTILTRDMADEIALVDAVPDKLRGEM 120
FRPVADGGSTPTSHRRRLTKISVIGAGNVGMAIAQTILTRDMADEIALVDAVPDKLRGEM
Sbjct: 61 FRPVADGGSTPTSHRRRLTKISVIGAGNVGMAIAQTILTRDMADEIALVDAVPDKLRGEM 120
Query: 121 LDLQHAAAFLPRVRLVSDTDLAVTRGSDLAIVTAGARQIPGESRLNLLQRNVALFRKIVP 180
LDLQHAAAFLPRVRLVSDTDLAVTRGSDLAIVTAGARQIPGESRLNLLQRNVALFRKIVP
Sbjct: 121 LDLQHAAAFLPRVRLVSDTDLAVTRGSDLAIVTAGARQIPGESRLNLLQRNVALFRKIVP 180
Query: 181 ALAEHSPEALLLIVSNPVDVLTYVAWKLSGFPASRVIGSGTNLDSSRFRFLLAEHLQVNA 240
ALAEHSPEALLLIVSNPVDVLTYVAWKLSGFPASRVIGSGTNLDSSRFRFLLAEHLQVNA
Sbjct: 181 ALAEHSPEALLLIVSNPVDVLTYVAWKLSGFPASRVIGSGTNLDSSRFRFLLAEHLQVNA 240
Query: 241 QDVQAYMVGEHGDSSVAIWSSMSVAGMPVLKSLRESHQSFDEEALEGIRRAVVDSAYEVI 300
QDVQAYMVGEHGDSSVAIWSSMSVAGMPVLKSLRESHQSFDEEALEGIRRAVVDSAYEVI
Sbjct: 241 QDVQAYMVGEHGDSSVAIWSSMSVAGMPVLKSLRESHQSFDEEALEGIRRAVVDSAYEVI 300
Query: 301 SLKGYTSWAIGYSVASLAASLLRDQHRIHPVSVLASGFHGIPQDHEVFLSLPARLGRAGV 360
SLKGYTSWAIGYSVASLAASLLRDQHRIHPVSVLASGFHGIPQDHEVFLSLPARLGRAGV
Sbjct: 301 SLKGYTSWAIGYSVASLAASLLRDQHRIHPVSVLASGFHGIPQDHEVFLSLPARLGRAGV 360
Query: 361 LGVXXXXXXXXXXXXXXXSAKTLWENCQLLDL 392
LGV SAKTLWENCQLLDL
Sbjct: 361 LGVAEMELTEEEARRLRRSAKTLWENCQLLDL 392
>Os06g0104900 Similar to L-lactate dehydrogenase B (EC 1.1.1.27) (LDH-B)
(Fragment)
Length = 360
Score = 514 bits (1323), Expect = e-146, Method: Compositional matrix adjust.
Identities = 272/365 (74%), Positives = 301/365 (82%), Gaps = 17/365 (4%)
Query: 40 MKKASSLSELGFDAEGASSGFFRPV----ADGGSTPTSHRRRLTKISVIGAGNVGMAIAQ 95
MKKASSLSELGFDA+G S FFR + D G+ P RRRL KISVIGAGNVGMAIAQ
Sbjct: 1 MKKASSLSELGFDADGPS--FFRHLTLTDGDDGTLP---RRRLIKISVIGAGNVGMAIAQ 55
Query: 96 TILTRDMADEIALVDAVPDKLRGEMLDLQHAAAFLPRVRLVSDTDLAVTRGSDLAIVTAG 155
TILT+D+ADEI L+DAV DK+RGEMLDLQHAAAFLPRV +VS T++++TR SDL IVTAG
Sbjct: 56 TILTQDLADEIVLIDAVADKVRGEMLDLQHAAAFLPRVNIVSGTEVSLTRSSDLVIVTAG 115
Query: 156 ARQIPGESRLNLLQRNVALFRKIVPALAEHSPEALLLIVSNPVDVLTYVAWKLSGFPASR 215
ARQIPGE+RLNLLQRNV+LFRKIVPA AE SPE++L+IVSNPVDVLTYVAWKLSGFPASR
Sbjct: 116 ARQIPGETRLNLLQRNVSLFRKIVPAAAEASPESVLVIVSNPVDVLTYVAWKLSGFPASR 175
Query: 216 VIGSGTNLDSSRFRFLLAEHLQVNAQDVQAYMVGEHGDSSVAIWSSMSVAGMPVLKSLRE 275
VIGSGTNLDSSRFRFLLAEHL+V+AQDVQAYMVGEHGDSSVA+WSS+SV GMPVL L++
Sbjct: 176 VIGSGTNLDSSRFRFLLAEHLEVSAQDVQAYMVGEHGDSSVALWSSISVGGMPVLAHLQK 235
Query: 276 SHQS------FDEEALEGIRRAVVDSAYEVISLKGYTSWAIGYSVASLAASLLRDQHRIH 329
+H+S FDE ALEGIRRAVV SAYEVI LKGYTSWAIGYSVAS+A SLLRDQ RIH
Sbjct: 236 NHRSAATAKKFDEAALEGIRRAVVGSAYEVIKLKGYTSWAIGYSVASIAWSLLRDQRRIH 295
Query: 330 PVSVLASGF-HGIPQDHEVFLSLPARLGRAGVLGVXXXXXXX-XXXXXXXXSAKTLWENC 387
PVSVLA G G+P D E+FLSLPARLGRAGVLGV SA+TLW C
Sbjct: 296 PVSVLAKGLVRGVPADRELFLSLPARLGRAGVLGVAAELVLTDEEERRLRISAETLWGYC 355
Query: 388 QLLDL 392
L L
Sbjct: 356 HALGL 360
>Os03g0773800 Similar to Malate dehydrogenase, glyoxysomal precursor (EC
1.1.1.37) (mbNAD-MDH)
Length = 354
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 141/316 (44%), Gaps = 39/316 (12%)
Query: 62 RPVADGGSTPTSHRRRLT----KISVIGA-GNVGMAIAQTILTRDMADEIALVDAVPDKL 116
RP + G P R + K++V+GA G +G ++ + + + L D V
Sbjct: 22 RPQMEEGVRPAPCRAKGGAPGFKVAVLGAAGGIGQPLSLLMKLNPLVSVLHLYDVV--NT 79
Query: 117 RGEMLDLQHA-AAFLPRVRLVSDTDLAVTRGSDLAIVTAGARQIPGESRLNLLQRNVALF 175
G D+ H + R L + A G DL I+ AG + PG +R +L +N +
Sbjct: 80 PGVTADVSHMDTTAVVRGFLGPNQLEAALTGMDLVIIPAGLPRKPGMTRDDLFNKNAGIV 139
Query: 176 RKIVPALAEHSPEALLLIVSNPVDVLTYVA---WKLSG-FPASRVIGSGTNLDSSRFRFL 231
R + +A+ P A++ ++SNPV+ +A +K +G + R++G T LD +R
Sbjct: 140 RSLCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGV-TTLDVARANTF 198
Query: 232 LAEHLQVNAQDVQAYMVGEHGDSSVAIWSSMSVAGMPVLKSLRESHQ--SFDEEALEGIR 289
+AE L ++ +DV +VG H AG+ +L L + H SF + + +
Sbjct: 199 VAEVLGIDPKDVNVPVVGGH-------------AGVTILPLLSQVHPPCSFTPDEISYLT 245
Query: 290 RAVVDSAYEVISLK---GYTSWAIGYSVASLAASLLRDQH---RIHPVSVLASGFHGIPQ 343
+ + + EV+ K G + ++ ++ A + LR + S +AS +P
Sbjct: 246 KRIQNGGTEVVEAKAGAGSATLSMAFAAAKFGDACLRAMRGDAGVVECSYVASAVTELP- 304
Query: 344 DHEVFLSLPARLGRAG 359
F + RLGRAG
Sbjct: 305 ----FFATKVRLGRAG 316
>Os08g0434300 Similar to Malate dehydrogenase precursor (EC 1.1.1.37)
Length = 356
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 132/294 (44%), Gaps = 33/294 (11%)
Query: 80 KISVIGA-GNVGMAIAQTILTRDMADEIALVDAVPDKLRGEMLDLQHAAAFLPRVRLVSD 138
K++V+GA G +G + I + E+ L D ++G DL H +
Sbjct: 36 KVAVLGAAGGIGQPLGLLIKMSPLVSELHLYDIA--NVKGVAADLSHCNTPSQVLDFTGP 93
Query: 139 TDLA-VTRGSDLAIVTAGARQIPGESRLNLLQRNVALFRKIVPALAEHSPEALLLIVSNP 197
++LA +G D+ ++ AG + PG +R +L N ++ + +V A+A++ PEA + I+SNP
Sbjct: 94 SELANCLKGVDVVVIPAGVPRKPGMTRDDLFNINASIVKSLVEAVADNCPEAFIHIISNP 153
Query: 198 VDVLTYVA---WKLSGFPASRVIGSGTNLDSSRFRFLLAEHLQVNAQDVQAYMVGEHGDS 254
V+ +A K G + + T LD R +A+ + DV +VG H
Sbjct: 154 VNSTVPIAAEVLKQKGVYNPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGH--- 210
Query: 255 SVAIWSSMSVAGMPVLKSLRESHQS--FDEEALEGIRRAVVDSAYEVISLK---GYTSWA 309
AG+ +L L ++ S F +E E + + + ++ EV+ K G + +
Sbjct: 211 ----------AGITILPLLSKTMPSVTFTDEETEQLTKRIQNAGTEVVEAKAGAGSATLS 260
Query: 310 IGYSVASLAASLLR---DQHRIHPVSVLASGFHGIPQDHEVFLSLPARLGRAGV 360
+ Y+ A S LR ++ + + S +P F + +LG+ GV
Sbjct: 261 MAYAAARFVESSLRALAGDPDVYECTFVQSELTELP-----FFASRVKLGKNGV 309
>Os01g0829800 Similar to Malate dehydrogenase precursor (EC 1.1.1.37)
Length = 396
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 115/252 (45%), Gaps = 21/252 (8%)
Query: 80 KISVIGA-GNVGMAIAQTILTRDMADEIALVDAVPDKLRGEMLDLQHAAAFLPRVRLVSD 138
K++V+GA G +G + I + + L D ++G DL H +
Sbjct: 77 KVAVLGAAGGIGQPLGLLIKMSPLVSALHLYDIA--NVKGVAADLSHCNTPSQVLDFTGP 134
Query: 139 TDLA-VTRGSDLAIVTAGARQIPGESRLNLLQRNVALFRKIVPALAEHSPEALLLIVSNP 197
++LA +G D+ ++ AG + PG +R +L N ++ + +V A+A++ PEA + I+SNP
Sbjct: 135 SELANCLKGVDVVVIPAGVPRKPGMTRDDLFNINASIVKTLVEAVADNCPEAFIHIISNP 194
Query: 198 VDVLTYVA---WKLSGFPASRVIGSGTNLDSSRFRFLLAEHLQVNAQDVQAYMVGEHGDS 254
V+ +A K G + + T LD R +A+ + DV +VG H
Sbjct: 195 VNSTVPIAAEVLKQKGVYNPKKLFGVTTLDVVRANTFIAQKKNLKLIDVDVPVVGGHAGI 254
Query: 255 SVAIWSSMSVAGMPVLKSLRESHQSFDEEALEGIRRAVVDSAYEVISLK---GYTSWAIG 311
++ +P+L R S +F E E + R + ++ EV+ K G + ++
Sbjct: 255 TI----------LPLLSKTRPS-VTFTNEETEELTRRIQNAGTEVVEAKAGAGSATLSMA 303
Query: 312 YSVASLAASLLR 323
Y+ A S LR
Sbjct: 304 YAAARFVESSLR 315
>Os12g0632700 Similar to Malate dehydrogenase, glyoxysomal precursor (EC
1.1.1.37)
Length = 356
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 134/298 (44%), Gaps = 41/298 (13%)
Query: 80 KISVIGA-GNVGMAIAQTILTRDMADEIALVDAVPDKLRGEMLDLQH------AAAFLPR 132
K++++GA G +G +A + + + L D V G D+ H FL +
Sbjct: 46 KVAILGASGGIGQPLALLMKMNPLVSVLHLYDVV--NTPGVTADISHMNTGAVVRGFLGK 103
Query: 133 VRLVSDTDLAVTRGSDLAIVTAGARQIPGESRLNLLQRNVALFRKIVPALAEHSPEALLL 192
+L + A+T G DL I+ AG + PG +R +L N + R + +A+ P A++
Sbjct: 104 PQL----ENALT-GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVN 158
Query: 193 IVSNPVDVLTYVA---WKLSG-FPASRVIGSGTNLDSSRFRFLLAEHLQVNAQDVQAYMV 248
++SNPV+ +A +K +G + R++G T LD R +AE L ++ +DV ++
Sbjct: 159 VISNPVNSTVPIAAEVFKKAGTYDPKRLLGV-TTLDVVRANTFVAEVLGLDPRDVNVPVI 217
Query: 249 GEHGDSSVAIWSSMSVAGMPVLKSLRESHQSFDEEALEGIRRAVVDSAYEVISLK---GY 305
G H + V I +S P SF E + + + + EV+ K G
Sbjct: 218 GGH--AGVTILPLLSQVNPPC---------SFTSEEISYLTTRIQNGGTEVVEAKAGAGS 266
Query: 306 TSWAIGYSVASLAASL---LRDQHRIHPVSVLASGFHGIPQDHEVFLSLPARLGRAGV 360
+ ++ Y+ + A + LR I S +AS +P F + RLGR G+
Sbjct: 267 ATLSMAYAASKFADACLRGLRGDAGIVECSFVASQVTELP-----FFASKVRLGRCGI 319
>Os07g0630800 Similar to Nodule-enhanced malate dehydrogenase
Length = 404
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 132/294 (44%), Gaps = 30/294 (10%)
Query: 80 KISVIGA-GNVGMAIAQTILTRDMADEIALVDAVPDKLRGEMLDLQHAAAFLPRVRLVSD 138
K++++GA G +G ++ + + + L D + G DL H
Sbjct: 79 KVAILGAAGGIGQPLSLLVKMSPLVSALHLYDIA--NVDGVTADLGHCNTPAKVAGFTGK 136
Query: 139 TDLA-VTRGSDLAIVTAGARQIPGESRLNLLQRNVALFRKIVPALAEHSPEALLLIVSNP 197
+LA G D+ ++ AG + PG +R +L N + R++V A+A+H+P AL+ ++SNP
Sbjct: 137 EELAGCLAGVDVVVIPAGVPRKPGMTRDDLFGINAGIVRELVEAVADHAPAALVHVISNP 196
Query: 198 VDVLTYVA---WKLSGFPASRVIGSGTNLDSSRFRFLLAEHLQVNAQDVQAYMVGEHGDS 254
V+ +A K G R + T LD R +AE + DV +VG H +
Sbjct: 197 VNSTVPIAAEVLKRKGVYDPRKLFGVTTLDVVRANTFVAEMKGLPLADVDVPVVGGHAAA 256
Query: 255 SVAIWSSMSVAGMPVLKSLRESHQSFDEEALEGIRRAVVDSAYEVISLK-----GYTSWA 309
++ +P+L R +F +E +E + R + ++ EV+ K G + +
Sbjct: 257 TI----------LPLLSKAR-PKTAFTDEEVEALTRRIQNAGTEVVEAKAKAGGGSATLS 305
Query: 310 IGYSVAS-LAASL--LRDQHRIHPVSVLASGFHGIPQDHEVFLSLPARLGRAGV 360
+ Y+ A L ASL L ++ S + +P+ F + +LGR GV
Sbjct: 306 MAYAAARFLEASLRGLDGDADVYECSYVQC--QAVPELP--FFACRVKLGRDGV 355
>AK109028
Length = 345
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 103/230 (44%), Gaps = 18/230 (7%)
Query: 80 KISVIGA-GNVGMAIAQTILTRDMADEIALVDAVPDKLRGEMLDLQHAAAFLPRVRLVSD 138
K++V+GA G +G ++ + +++L D RG D+ H + D
Sbjct: 33 KVAVLGAAGGIGQPLSLLMKMNPQVSQLSLYDVA--GTRGVGADVSHINSRAQVKGYEGD 90
Query: 139 TDLA-VTRGSDLAIVTAGARQIPGESRLNLLQRNVALFRKIVPALAEHSPEALLLIVSNP 197
LA +G DL I+ AG + PG +R +L + N + + +V A +H P A+L I+SNP
Sbjct: 91 AQLAEALKGCDLVIIPAGVPRKPGMTRDDLFKINAGIVKGLVEACGKHCPGAILNIISNP 150
Query: 198 VDVLTYVA----WKLSGFPASRVIGSGTNLDSSRFRFLLAEHLQVNAQDVQAYMVGEHGD 253
V+ +A K+ + +V+G T LD R + AE L ++ V +VG H
Sbjct: 151 VNSTVPIAAEALKKMGVYDKRKVMGV-TTLDVVRAKTFYAEKLGLDVGQVDVPVVGGHAG 209
Query: 254 SSVAIWSSMSVAGMPVLKSLRESHQSFDEEALEGIRRAVVDSAYEVISLK 303
++ S + MP + E +E + + D EV+ K
Sbjct: 210 ITILPLFSQATPTMP---------SNTSAEVIEALTKRTQDGGTEVVEAK 250
>Os01g0649100 Malate dehydrogenase
Length = 340
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 125/300 (41%), Gaps = 44/300 (14%)
Query: 80 KISVIGA-GNVGMAIAQTILTRDMADEIALVDAVPDKLRGEMLDLQHAAAFLPRVRLVSD 138
K++++GA G +G ++ + + ++L D G D+ H A + D
Sbjct: 29 KVAILGAAGGIGQPLSLLMKLNPLVSSLSLYDIA--GTPGVAADVSHINAPAQVKGFMGD 86
Query: 139 TDLA-VTRGSDLAIVTAGARQIPGESRLNLLQRNVALFRKIVPALAEHSPEALLLIVSNP 197
L GSD+ I+ AG + PG +R +L N + + + A+A++ P AL+ ++SNP
Sbjct: 87 DQLGEALEGSDIVIIPAGVPRKPGMTRDDLFNINAGIVKNLCTAIAKYCPNALVNMISNP 146
Query: 198 VDVLTYVA---WKLSGFPASRVIGSGTNLDSSRFRFLLAEHLQVNAQDVQAYMVGEHGDS 254
V+ +A +K +G + + T LD R + A V DV +VG H
Sbjct: 147 VNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVTDVNVPVVGGHAGI 206
Query: 255 SVAIWSSMSVAGMPVLKSLRESHQSFDEEALEGIRRAVVDSAYEVISL---KGYTSWAIG 311
++ +P+ + + +E ++ + + D EV+ KG + ++
Sbjct: 207 TI----------LPLFSQATPATNALSDEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
Query: 312 YSVASLAASLLRDQHRIHPVSVLASGFHGIPQDHEV-----------FLSLPARLGRAGV 360
Y+ A A + L+ G +G+P E F + +LG+ GV
Sbjct: 257 YAGAVFANACLK-------------GLNGVPDVVECSFVQSTVTELPFFASKVKLGKNGV 303
>Os05g0574400 Similar to Malate dehydrogenase
Length = 340
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 124/300 (41%), Gaps = 44/300 (14%)
Query: 80 KISVIGA-GNVGMAIAQTILTRDMADEIALVDAVPDKLRGEMLDLQHAAAFLPRVRLVSD 138
K++++GA G +G +A + + ++L D G D+ H + V +
Sbjct: 28 KVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIA--GTPGVAADVSHINSPALVKGFVGE 85
Query: 139 TDLA-VTRGSDLAIVTAGARQIPGESRLNLLQRNVALFRKIVPALAEHSPEALLLIVSNP 197
L GSD+ I+ AG + PG +R +L N + + + A++++ P AL+ ++SNP
Sbjct: 86 EQLGEALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKGLCTAISKYCPNALVNMISNP 145
Query: 198 VDVLTYVA---WKLSGFPASRVIGSGTNLDSSRFRFLLAEHLQVNAQDVQAYMVGEHGDS 254
V+ +A +K +G + + T LD R + A V +V +VG H
Sbjct: 146 VNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVTEVNVPVVGGHAGI 205
Query: 255 SVAIWSSMSVAGMPVLKSLRESHQSFDEEALEGIRRAVVDSAYEVISL---KGYTSWAIG 311
++ +P+ + + E ++ + + D EV+ KG + ++
Sbjct: 206 TI----------LPLFSQATPASNALSHEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 255
Query: 312 YSVASLAASLLRDQHRIHPVSVLASGFHGIPQDHEV-----------FLSLPARLGRAGV 360
Y+ A A + L+ G +G+P E F + RLG+ GV
Sbjct: 256 YAGAVFADACLK-------------GLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGV 302
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.133 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,223,198
Number of extensions: 477738
Number of successful extensions: 1418
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 1417
Number of HSP's successfully gapped: 10
Length of query: 392
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 289
Effective length of database: 11,657,759
Effective search space: 3369092351
Effective search space used: 3369092351
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)