Os08g0434300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Malate dehydrogenase precursor (EC 1.1.1.37).
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Os08g0434300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Malate dehydrogenase precursor (EC 1.1.1.37).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 167.6 | 0.608 | 12.8 | -0.556 | 1.42 | -1.89 | -0.0643 | -0.165 | -0.537 | 15.9 | 7.887 | 128 | -- | -- |
| 167.13 | 0.602 | 12.8 | -0.574 | 1.37 | -1.89 | 0.00124 | -- | -0.537 | 15.7 | 7.166 | 140 | -- | -- |
| 166.75 | 0.601 | 12.8 | -0.605 | 1.25 | -1.99 | -- | -0.107 | -0.564 | 15.9 | 6.911 | 147 | -- | -- |
| 166.78 | 0.601 | 12.8 | -0.571 | 1.26 | -2 | -- | -- | -0.539 | 15.9 | 6.905 | 147 | -- | -- |
| 178.44 | 0.622 | 12.8 | -0.648 | -- | -2.77 | -- | -0.181 | -0.516 | -- | 4.499 | 244 | -- | -- |
| 211.08 | 0.681 | 12.8 | -0.539 | 3.32 | -- | 0.385 | -- | -0.459 | 14.1 | -- | -- | -- | -- |
| 211.64 | 0.681 | 12.8 | -0.528 | 3.32 | -- | -- | -- | -0.456 | 14.1 | -- | -- | -- | -- |
| 177.84 | 0.621 | 12.8 | -0.689 | -- | -2.82 | -- | -- | -0.572 | -- | 4.421 | 249 | -- | -- |
| 175.46 | 0.617 | 12.8 | -- | 1.3 | -1.96 | -- | -- | -0.472 | 15.8 | 7.811 | 147 | -- | -- |
| 872.72 | 1.38 | 12.8 | -0.667 | -- | -- | -- | -- | -0.535 | -- | -- | -- | -- | -- |
| 218.99 | 0.692 | 12.8 | -- | 3.33 | -- | -- | -- | -0.397 | 14.1 | -- | -- | -- | -- |
| 189.99 | 0.642 | 12.8 | -- | -- | -2.83 | -- | -- | -0.491 | -- | 5.32 | 248 | -- | -- |
| 884.44 | 1.39 | 12.8 | -- | -- | -- | -- | -- | -0.461 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 164.27 | radiation | 1 | 90 | > th | dose independent | rect. | 7 | 22 |
| 2 | 164.36 | radiation | 1 | 90 | > th | dose independent | rect. | 7 | 12 |
| 24 | 167.29 | radiation | 1 | 270 | < th | dose independent | rect. | 7 | 12 |
| 25 | 167.33 | radiation | 1 | 270 | < th | dose dependent | rect. | 7 | 12 |
| 26 | 167.73 | radiation | 1 | 270 | < th | dose dependent | rect. | 9 | 10 |
| 27 | 167.90 | radiation | 1 | 270 | < th | dose independent | rect. | 9 | 10 |
| 38 | 169.69 | radiation | 1 | 90 | > th | dose independent | sin | 23 | NA |
| 41 | 169.89 | radiation | 1 | 90 | < th | dose independent | sin | 23 | NA |
| 56 | 171.45 | radiation | 10 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 66 | 172.24 | radiation | 1 | 720 | < th | dose independent | rect. | 23 | 21 |
| 80 | 172.58 | radiation | 1 | 90 | < th | dose dependent | sin | 23 | NA |
| 84 | 172.72 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 21 |
| 91 | 173.24 | radiation | 10 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 93 | 173.49 | radiation | 10 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 97 | 173.64 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 22 |
| 107 | 174.04 | radiation | 10 | 90 | < th | dose dependent | no | NA | NA |
| 109 | 174.09 | radiation | 10 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 111 | 174.22 | radiation | 10 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 113 | 174.31 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 19 |
| 125 | 174.53 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 20 |
| 145 | 175.20 | radiation | 1 | 270 | > th | dose independent | rect. | 17 | 23 |
| 151 | 175.33 | radiation | 1 | 720 | < th | dose dependent | rect. | 23 | 21 |
| 177 | 176.05 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 22 |
| 184 | 176.30 | radiation | 1 | 720 | > th | dose independent | rect. | 12 | 6 |
| 188 | 176.41 | radiation | 1 | 720 | < th | dose independent | rect. | 21 | 23 |
| 199 | 176.53 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 20 |
| 213 | 176.79 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 7 |
| 218 | 176.95 | radiation | 10 | 90 | < th | dose dependent | rect. | 17 | 16 |
| 225 | 177.05 | radiation | 10 | 720 | < th | dose dependent | rect. | 15 | 15 |
| 227 | 177.07 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 23 |
| 241 | 177.28 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 19 |
| 246 | 177.39 | radiation | 1 | 270 | > th | dose independent | rect. | 4 | 13 |
| 274 | 177.58 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 16 |
| 278 | 177.60 | radiation | 10 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 289 | 177.77 | radiation | 10 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 293 | 177.80 | humidity | 70 | 90 | > th | dose dependent | rect. | 11 | 10 |
| 345 | 178.44 | radiation | 40 | 720 | < th | dose dependent | rect. | 15 | 15 |
| 397 | 178.86 | radiation | 10 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 433 | 179.26 | humidity | 70 | 10 | > th | dose dependent | rect. | 11 | 9 |
| 452 | 179.33 | radiation | 10 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 467 | 179.42 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 489 | 179.57 | humidity | 80 | 720 | > th | dose independent | rect. | 9 | 10 |
| 510 | 179.75 | humidity | 60 | 10 | > th | dose dependent | rect. | 10 | 12 |
| 515 | 179.78 | radiation | 10 | 720 | < th | dose dependent | sin | 14 | NA |
| 539 | 179.92 | radiation | 10 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 555 | 180.05 | humidity | 80 | 720 | < th | dose independent | rect. | 6 | 12 |
| 556 | 180.06 | radiation | 1 | 720 | < th | dose independent | sin | 14 | NA |
| 575 | 180.15 | humidity | 60 | 270 | > th | dose dependent | rect. | 15 | 5 |
| 584 | 180.20 | humidity | 50 | 90 | > th | dose dependent | rect. | 17 | 14 |
| 643 | 180.53 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 690 | 180.53 | humidity | 80 | 10 | > th | dose dependent | rect. | 6 | 15 |
| 692 | 180.55 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 711 | 180.69 | radiation | 10 | 90 | < th | dose independent | rect. | 18 | 15 |
| 720 | 180.76 | humidity | 70 | 90 | > th | dose dependent | rect. | 17 | 3 |
| 727 | 180.80 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 3 |
| 774 | 181.09 | humidity | 90 | 30 | < th | dose independent | rect. | 7 | 11 |
| 791 | 181.17 | radiation | 1 | 720 | > th | dose independent | sin | 14 | NA |
| 825 | 181.43 | humidity | 70 | 720 | > th | dose dependent | rect. | 8 | 12 |
| 853 | 181.57 | humidity | 50 | 270 | > th | dose dependent | rect. | 1 | 19 |
| 854 | 181.58 | humidity | 80 | 720 | > th | dose independent | rect. | 1 | 18 |
| 873 | 181.64 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 907 | 181.85 | temperature | 30 | 90 | < th | dose independent | rect. | 17 | 14 |
| 917 | 181.90 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 942 | 181.95 | humidity | 70 | 10 | > th | dose dependent | rect. | 18 | 2 |
| 963 | 182.00 | humidity | 70 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 985 | 182.04 | humidity | 50 | 270 | > th | dose dependent | rect. | 23 | 22 |