Os12g0632700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Malate dehydrogenase, glyoxysomal precursor (EC 1.1.1.37).
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Os12g0632700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Malate dehydrogenase, glyoxysomal precursor (EC 1.1.1.37).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.4 | 0.272 | 9.95 | -0.634 | 0.388 | -0.396 | -0.202 | -1.45 | -0.25 | 4.39 | 20.4 | 1416 | -- | -- |
| 36.68 | 0.282 | 9.91 | -0.39 | 0.384 | -0.2 | -0.233 | -- | -0.178 | 4.06 | 21.7 | 820 | -- | -- |
| 33.51 | 0.27 | 9.95 | -0.639 | 0.386 | -0.394 | -- | -1.47 | -0.251 | 4.31 | 20.42 | 1415 | -- | -- |
| 36.74 | 0.282 | 9.9 | -0.363 | 0.382 | -0.224 | -- | -- | -0.171 | 4.36 | 21.75 | 1724 | -- | -- |
| 41.51 | 0.3 | 9.96 | -0.641 | -- | -0.372 | -- | -1.5 | -0.246 | -- | 20.41 | 1433 | -- | -- |
| 38.15 | 0.29 | 9.92 | -0.463 | 0.386 | -- | -0.265 | -- | -0.241 | 4.48 | -- | -- | -- | -- |
| 38.33 | 0.29 | 9.92 | -0.461 | 0.384 | -- | -- | -- | -0.24 | 4.39 | -- | -- | -- | -- |
| 43.72 | 0.309 | 9.91 | -0.389 | -- | -0.203 | -- | -- | -0.176 | -- | 21.75 | 1724 | -- | -- |
| 39.29 | 0.292 | 9.89 | -- | 0.404 | -0.345 | -- | -- | -0.0818 | 4.38 | 21.5 | 8014 | -- | -- |
| 46.23 | 0.318 | 9.92 | -0.446 | -- | -- | -- | -- | -0.23 | -- | -- | -- | -- | -- |
| 43.93 | 0.31 | 9.91 | -- | 0.375 | -- | -- | -- | -0.188 | 4.42 | -- | -- | -- | -- |
| 46.32 | 0.317 | 9.89 | -- | -- | -0.35 | -- | -- | -0.095 | -- | 19.08 | 46523 | -- | -- |
| 51.47 | 0.335 | 9.91 | -- | -- | -- | -- | -- | -0.18 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.04 | humidity | 70 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 2 | 33.15 | humidity | 70 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 3 | 33.40 | temperature | 20 | 1440 | > th | dose independent | rect. | 10 | 20 |
| 8 | 33.43 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 17 |
| 15 | 33.46 | temperature | 20 | 1440 | < th | dose independent | rect. | 10 | 20 |
| 35 | 33.51 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 22 |
| 44 | 33.52 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 64 | 33.56 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 70 | 33.57 | temperature | 20 | 1440 | > th | dose independent | sin | 15 | NA |
| 77 | 33.57 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 22 |
| 78 | 33.57 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 22 |
| 103 | 33.59 | temperature | 20 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 116 | 33.60 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 23 |
| 117 | 33.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 129 | 33.62 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 11 |
| 143 | 33.63 | temperature | 20 | 1440 | < th | dose independent | sin | 15 | NA |
| 158 | 33.64 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 165 | 33.64 | temperature | 20 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 198 | 33.67 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 213 | 33.67 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 325 | 33.79 | humidity | 60 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 355 | 33.83 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 380 | 33.86 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 405 | 33.89 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 418 | 33.91 | temperature | 20 | 4320 | < th | dose independent | rect. | 15 | 8 |
| 450 | 33.96 | temperature | 20 | 1440 | > th | dose independent | sin | 23 | NA |
| 462 | 33.98 | temperature | 20 | 720 | < th | dose independent | sin | 22 | NA |
| 472 | 33.98 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 473 | 33.99 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 485 | 34.00 | humidity | 70 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 497 | 34.02 | humidity | 60 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 504 | 34.03 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 9 |
| 512 | 34.03 | humidity | 70 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 514 | 34.04 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 515 | 34.04 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 7 |
| 573 | 34.10 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 6 |
| 627 | 34.16 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 665 | 34.18 | humidity | 60 | 43200 | < th | dose dependent | sin | 21 | NA |
| 667 | 34.18 | humidity | 60 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 682 | 34.18 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 815 | 34.22 | humidity | 60 | 43200 | < th | dose dependent | no | NA | NA |
| 816 | 34.22 | wind | 9 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 843 | 34.22 | humidity | 60 | 43200 | < th | dose dependent | rect. | 13 | 23 |
| 860 | 34.24 | humidity | 60 | 43200 | < th | dose dependent | rect. | 15 | 23 |
| 867 | 34.25 | temperature | 15 | 30 | > th | dose independent | rect. | 23 | 23 |
| 868 | 34.25 | temperature | 20 | 720 | < th | dose dependent | rect. | 18 | 5 |
| 889 | 34.27 | temperature | 20 | 720 | < th | dose dependent | rect. | 14 | 9 |
| 901 | 34.29 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 920 | 34.30 | wind | 9 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 941 | 34.32 | wind | 5 | 4320 | > th | dose independent | rect. | 16 | 8 |
| 966 | 34.34 | wind | 5 | 4320 | < th | dose independent | rect. | 16 | 8 |
| 983 | 34.35 | wind | 9 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 999 | 34.36 | temperature | 20 | 720 | < th | dose dependent | rect. | 21 | 2 |