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Os05g0574400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Malate dehydrogenase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14.4 (0.03) R2 : 0.833
β1 : -2.35 (0.11) R2dD : 0.175 R2D : 0.149
β2 : 2.96 (0.0711) R2dC : 0.638 R2C : 0.638
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.662 (0.064) R2dN8 : 0.0525 R2N8 : 0.00949
σ : 0.563
deviance : 144.78
__
_____
C
peak time of C : 11.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
110.43 0.494 14.4 -2.41 1.85 -0.985 1.18 -0.745 -0.713 11.4 8.64 10 -- --
110.99 0.491 14.4 -2.43 1.82 -1.01 1.99 -- -0.724 11.4 8.727 11 -- --
111.99 0.497 14.4 -2.4 1.95 -0.91 -- -1.69 -0.683 11.4 10.64 11 -- --
128.02 0.527 14.4 -2.36 1.83 -1.02 -- -- -0.698 11.3 11.37 9 -- --
155.96 0.585 14.5 -2.39 -- -2.34 -- -1.57 -0.703 -- 10.64 11 -- --
127.41 0.529 14.4 -2.44 2.97 -- 2 -- -0.67 11.5 -- -- -- --
144.78 0.563 14.4 -2.35 2.96 -- -- -- -0.662 11.5 -- -- -- --
162.83 0.594 14.5 -2.34 -- -2.34 -- -- -0.76 -- 9.032 9 -- --
272.52 0.769 14.4 -- 1.89 -1.01 -- -- -0.457 11.4 9.968 12 -- --
695.84 1.23 14.5 -2.44 -- -- -- -- -0.694 -- -- -- -- --
290.87 0.798 14.3 -- 2.99 -- -- -- -0.399 11.6 -- -- -- --
304.92 0.813 14.4 -- -- -2.39 -- -- -0.498 -- 10 11 -- --
852.28 1.36 14.4 -- -- -- -- -- -0.424 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 106.94 temperature 15.0 270 > th dose independent rect. 15 13
2 107.73 precipitation 0.1 720 < th dose independent rect. 21 10
3 107.73 precipitation 0.1 720 < th dose dependent rect. 21 10
4 107.81 temperature 30.0 90 < th dose dependent rect. 1 12
6 108.24 wind 1.0 30 > th dose independent rect. 2 4
7 108.32 temperature 30.0 10 < th dose dependent rect. 1 11
11 108.58 atmosphere 1000.0 270 > th dose independent rect. 15 13
22 109.21 precipitation 0.1 720 < th dose independent rect. 19 14
23 109.21 precipitation 0.1 720 < th dose dependent rect. 19 14
24 109.21 radiation 10.0 30 < th dose dependent rect. 1 20
26 109.28 atmosphere 1000.0 30 > th dose independent rect. 16 14
27 109.30 precipitation 0.1 270 < th dose independent rect. 4 11
28 109.30 precipitation 0.1 270 < th dose dependent rect. 4 11
30 109.48 temperature 15.0 10 > th dose dependent rect. 5 11
36 109.74 radiation 10.0 10 < th dose dependent rect. 10 21
44 109.86 atmosphere 1000.0 30 > th dose independent rect. 18 12
48 109.89 radiation 1.0 90 < th dose independent rect. 1 18
51 109.99 wind 9.0 270 < th dose independent rect. 15 13
58 110.04 radiation 40.0 270 < th dose independent rect. 15 13
62 110.08 atmosphere 1000.0 10 > th dose independent rect. 1 20
74 110.23 temperature 10.0 270 > th dose independent rect. 4 11
75 110.23 atmosphere 1015.0 270 < th dose independent rect. 4 11
82 110.31 atmosphere 1000.0 720 > th dose independent rect. 18 1
91 110.43 radiation 10.0 10 < th dose dependent rect. 8 23
94 110.46 wind 9.0 270 < th dose independent rect. 4 11
99 110.51 radiation 10.0 10 < th dose dependent rect. 16 22
105 110.55 atmosphere 1000.0 270 > th dose independent rect. 23 20
109 110.61 radiation 20.0 10 < th dose dependent rect. 16 14
118 110.67 humidity 60.0 720 > th dose independent rect. 19 14
119 110.67 atmosphere 995.0 720 > th dose independent rect. 16 20
126 110.73 wind 9.0 720 < th dose independent rect. 21 10
132 110.75 radiation 10.0 10 < th dose dependent no NA NA
134 110.75 radiation 10.0 10 < th dose dependent rect. 13 23
135 110.77 temperature 15.0 720 > th dose independent rect. 9 10
137 110.81 humidity 70.0 720 > th dose independent rect. 21 10
139 110.83 wind 9.0 720 < th dose independent rect. 19 14
141 110.83 temperature 10.0 270 > th dose dependent rect. 4 11
148 110.89 radiation 20.0 720 < th dose independent rect. 21 10
157 110.92 temperature 10.0 720 > th dose independent rect. 21 10
158 110.92 temperature 30.0 720 < th dose independent rect. 21 10
159 110.92 humidity 50.0 720 > th dose independent rect. 21 10
161 110.92 atmosphere 995.0 720 > th dose independent rect. 21 10
163 110.92 temperature 10.0 720 > th dose independent rect. 7 14
185 111.06 atmosphere 1015.0 720 < th dose independent rect. 9 10
186 111.06 temperature 10.0 720 > th dose independent rect. 19 14
188 111.06 atmosphere 995.0 720 > th dose independent rect. 19 14
201 111.15 radiation 1.0 90 > th dose independent rect. 5 12
232 111.31 temperature 15.0 30 > th dose independent rect. 18 12
233 111.32 temperature 15.0 720 > th dose independent rect. 15 6
239 111.34 temperature 10.0 90 > th dose dependent rect. 21 12
243 111.36 temperature 20.0 10 > th dose dependent sin 5 NA
256 111.49 humidity 90.0 30 < th dose independent rect. 6 12
263 111.52 radiation 1.0 90 < th dose independent sin 2 NA
266 111.53 atmosphere 995.0 270 > th dose independent rect. 4 11
280 111.60 radiation 1.0 90 > th dose independent sin 2 NA
285 111.65 temperature 15.0 720 > th dose independent rect. 18 1
286 111.65 atmosphere 995.0 720 > th dose independent rect. 16 5
288 111.67 radiation 10.0 10 < th dose dependent rect. 16 20
292 111.72 temperature 10.0 10 > th dose dependent rect. 21 14
303 111.74 temperature 15.0 30 > th dose independent rect. 16 14
318 111.82 precipitation 0.1 720 < th dose independent rect. 21 18
321 111.82 precipitation 0.1 720 < th dose dependent rect. 21 18
322 111.83 radiation 1.0 90 < th dose dependent sin 2 NA
327 111.85 radiation 10.0 10 < th dose dependent rect. 23 23
338 111.93 temperature 25.0 90 > th dose dependent rect. 21 12
353 112.02 radiation 30.0 270 < th dose independent rect. 19 13
362 112.07 wind 9.0 270 < th dose independent rect. 8 11
390 112.20 temperature 30.0 270 < th dose independent rect. 19 13
407 112.27 atmosphere 995.0 270 > th dose independent rect. 8 11
410 112.28 radiation 10.0 43200 < th dose dependent rect. 22 5
423 112.31 temperature 20.0 10 > th dose dependent rect. 21 19
428 112.33 atmosphere 1000.0 30 > th dose independent rect. 11 19
429 112.33 temperature 30.0 90 < th dose dependent rect. 1 18
439 112.37 atmosphere 1000.0 30 > th dose independent rect. 1 5
442 112.37 temperature 30.0 90 < th dose dependent rect. 1 5
447 112.39 temperature 30.0 10 < th dose dependent sin 4 NA
466 112.48 radiation 10.0 10 < th dose dependent rect. 1 23
475 112.51 wind 1.0 30 > th dose independent rect. 16 14
483 112.56 temperature 30.0 10 < th dose dependent rect. 1 7
488 112.59 humidity 90.0 30 < th dose independent rect. 6 10
489 112.59 wind 1.0 30 > th dose independent rect. 2 19
494 112.60 radiation 1.0 720 < th dose independent rect. 18 1
495 112.60 precipitation 0.1 720 < th dose independent rect. 19 21
497 112.60 precipitation 0.1 720 < th dose dependent rect. 19 21
513 112.67 atmosphere 995.0 720 > th dose independent rect. 17 10
529 112.74 atmosphere 1015.0 720 < th dose independent rect. 7 14
538 112.79 atmosphere 1000.0 10 > th dose independent rect. 11 10
544 112.83 radiation 1.0 90 < th dose independent rect. 1 11
550 112.85 radiation 10.0 90 < th dose dependent rect. 1 13
559 112.88 humidity 50.0 270 > th dose independent rect. 4 11
561 112.89 radiation 1.0 90 < th dose independent rect. 1 7
564 112.89 wind 1.0 10 > th dose dependent rect. 2 4
567 112.90 atmosphere 995.0 720 > th dose independent rect. 7 21
571 112.92 radiation 40.0 90 < th dose dependent rect. 1 12
577 112.93 temperature 30.0 10 < th dose dependent rect. 1 20
580 112.94 precipitation 0.1 720 < th dose independent rect. 12 19
581 112.94 precipitation 0.1 720 < th dose dependent rect. 12 19
582 112.95 humidity 70.0 720 > th dose independent rect. 18 1
640 113.20 temperature 15.0 1440 > th dose independent rect. 12 10
641 113.20 atmosphere 1000.0 30 > th dose independent rect. 9 23
666 113.28 atmosphere 995.0 30 > th dose dependent rect. 1 5
673 113.29 temperature 10.0 720 > th dose dependent rect. 21 2
674 113.29 atmosphere 995.0 30 > th dose dependent rect. 16 14
696 113.37 temperature 30.0 270 < th dose dependent rect. 1 3
702 113.38 atmosphere 995.0 30 > th dose dependent rect. 1 20
737 113.50 precipitation 0.1 270 < th dose independent rect. 15 13
739 113.50 precipitation 0.1 270 < th dose dependent rect. 15 13
744 113.52 precipitation 0.1 720 < th dose independent rect. 19 5
746 113.52 precipitation 0.1 720 < th dose dependent rect. 19 5
755 113.54 precipitation 0.1 720 < th dose independent rect. 3 6
758 113.54 precipitation 0.1 720 < th dose dependent rect. 3 6
764 113.55 radiation 1.0 720 < th dose dependent rect. 23 7
773 113.58 radiation 40.0 270 < th dose independent rect. 9 10
779 113.59 temperature 10.0 720 > th dose dependent rect. 4 3
789 113.62 atmosphere 995.0 720 > th dose independent rect. 7 14
837 113.72 radiation 1.0 720 > th dose independent rect. 18 13
845 113.73 radiation 20.0 720 < th dose dependent rect. 17 2
856 113.75 atmosphere 1010.0 30 < th dose independent rect. 18 12
864 113.77 wind 7.0 30 < th dose independent rect. 16 14
878 113.79 radiation 1.0 90 < th dose dependent rect. 1 7
931 113.90 wind 9.0 720 < th dose independent rect. 7 14
952 113.96 precipitation 0.1 270 < th dose independent rect. 8 11
954 113.96 precipitation 0.1 720 < th dose independent rect. 4 20
957 113.96 precipitation 0.1 270 < th dose dependent rect. 8 11
958 113.96 precipitation 0.1 720 < th dose dependent rect. 4 20
979 114.02 atmosphere 1010.0 720 < th dose independent rect. 18 1
984 114.02 radiation 40.0 270 < th dose dependent rect. 23 13