BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0574400 Os05g0574400|AK073698
(340 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0574400 Similar to Malate dehydrogenase 575 e-164
Os01g0649100 Malate dehydrogenase 540 e-154
Os12g0632700 Similar to Malate dehydrogenase, glyoxysomal p... 400 e-112
AK109028 395 e-110
Os03g0773800 Similar to Malate dehydrogenase, glyoxysomal p... 385 e-107
Os08g0434300 Similar to Malate dehydrogenase precursor (EC ... 367 e-102
Os01g0829800 Similar to Malate dehydrogenase precursor (EC ... 362 e-100
Os07g0630800 Similar to Nodule-enhanced malate dehydrogenase 345 4e-95
>Os05g0574400 Similar to Malate dehydrogenase
Length = 340
Score = 575 bits (1481), Expect = e-164, Method: Compositional matrix adjust.
Identities = 294/340 (86%), Positives = 294/340 (86%)
Query: 1 MRPSXXXXXXXXXXXXDYXXXXXXXERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDI 60
MRPS DY ERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDI
Sbjct: 1 MRPSLLRYAAQALRRRDYSSAAAAAERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDI 60
Query: 61 AGTPGVAADVSHINSPALVKGFVGEEQLGEALEGSDVVIIPAGVPRKPGMTRDDLFNINA 120
AGTPGVAADVSHINSPALVKGFVGEEQLGEALEGSDVVIIPAGVPRKPGMTRDDLFNINA
Sbjct: 61 AGTPGVAADVSHINSPALVKGFVGEEQLGEALEGSDVVIIPAGVPRKPGMTRDDLFNINA 120
Query: 121 GIVKGLCTAISKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAK 180
GIVKGLCTAISKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAK
Sbjct: 121 GIVKGLCTAISKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAK 180
Query: 181 TFYAGKAXXXXXXXXXXXXGGHAGITILPLFSQATPASNALSHEDIKALTKRTQDGGTEV 240
TFYAGKA GGHAGITILPLFSQATPASNALSHEDIKALTKRTQDGGTEV
Sbjct: 181 TFYAGKANVPVTEVNVPVVGGHAGITILPLFSQATPASNALSHEDIKALTKRTQDGGTEV 240
Query: 241 VEAKAGKGSATLSMAYAGAVFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKN 300
VEAKAGKGSATLSMAYAGAVFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKN
Sbjct: 241 VEAKAGKGSATLSMAYAGAVFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKN 300
Query: 301 GVEEVLGLGQLSXXXXXXXXXXXXXXXSSIEKGIKFAHAN 340
GVEEVLGLGQLS SSIEKGIKFAHAN
Sbjct: 301 GVEEVLGLGQLSEFEKEGLENLKGELKSSIEKGIKFAHAN 340
>Os01g0649100 Malate dehydrogenase
Length = 340
Score = 540 bits (1390), Expect = e-154, Method: Compositional matrix adjust.
Identities = 277/340 (81%), Positives = 289/340 (85%), Gaps = 1/340 (0%)
Query: 1 MRPSXXXXXXXXXXXXD-YXXXXXXXERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYD 59
MRPS Y ERKVAILGAAGGIGQPL+LLMKLNPLVSSLSLYD
Sbjct: 1 MRPSLMRSASQVLRRRRGYSSASGQPERKVAILGAAGGIGQPLSLLMKLNPLVSSLSLYD 60
Query: 60 IAGTPGVAADVSHINSPALVKGFVGEEQLGEALEGSDVVIIPAGVPRKPGMTRDDLFNIN 119
IAGTPGVAADVSHIN+PA VKGF+G++QLGEALEGSD+VIIPAGVPRKPGMTRDDLFNIN
Sbjct: 61 IAGTPGVAADVSHINAPAQVKGFMGDDQLGEALEGSDIVIIPAGVPRKPGMTRDDLFNIN 120
Query: 120 AGIVKGLCTAISKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRA 179
AGIVK LCTAI+KYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRA
Sbjct: 121 AGIVKNLCTAIAKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRA 180
Query: 180 KTFYAGKAXXXXXXXXXXXXGGHAGITILPLFSQATPASNALSHEDIKALTKRTQDGGTE 239
KTFYAGKA GGHAGITILPLFSQATPA+NALS EDIKALTKRTQDGGTE
Sbjct: 181 KTFYAGKANVPVTDVNVPVVGGHAGITILPLFSQATPATNALSDEDIKALTKRTQDGGTE 240
Query: 240 VVEAKAGKGSATLSMAYAGAVFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGK 299
VVEAKAGKGSATLSMAYAGAVFA+ACLKGLNGVPDVVECSFVQSTVTELPFFASKV+LGK
Sbjct: 241 VVEAKAGKGSATLSMAYAGAVFANACLKGLNGVPDVVECSFVQSTVTELPFFASKVKLGK 300
Query: 300 NGVEEVLGLGQLSXXXXXXXXXXXXXXXSSIEKGIKFAHA 339
NGVEEVLGLGQLS +SIEKGIKFA+A
Sbjct: 301 NGVEEVLGLGQLSDFEKEGLENLKGELKASIEKGIKFANA 340
>Os12g0632700 Similar to Malate dehydrogenase, glyoxysomal precursor (EC
1.1.1.37)
Length = 356
Score = 400 bits (1027), Expect = e-112, Method: Compositional matrix adjust.
Identities = 204/309 (66%), Positives = 234/309 (75%), Gaps = 1/309 (0%)
Query: 28 KVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIAGTPGVAADVSHINSPALVKGFVGEEQ 87
KVAILGA+GGIGQPLALLMK+NPLVS L LYD+ TPGV AD+SH+N+ A+V+GF+G+ Q
Sbjct: 46 KVAILGASGGIGQPLALLMKMNPLVSVLHLYDVVNTPGVTADISHMNTGAVVRGFLGKPQ 105
Query: 88 LGEALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKGLCTAISKYCPNALVNMISNPVN 147
L AL G D+VIIPAGVPRKPGMTRDDLFNINAGIV+ LC I+K CPNA+VN+ISNPVN
Sbjct: 106 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNVISNPVN 165
Query: 148 STVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKAXXXXXXXXXXXXGGHAGITI 207
STVPIAAEVFKKAGTYD K+L GVTTLDVVRA TF A GGHAG+TI
Sbjct: 166 STVPIAAEVFKKAGTYDPKRLLGVTTLDVVRANTFVAEVLGLDPRDVNVPVIGGHAGVTI 225
Query: 208 LPLFSQATPASNALSHEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLK 267
LPL SQ P + + E+I LT R Q+GGTEVVEAKAG GSATLSMAYA + FADACL+
Sbjct: 226 LPLLSQVNPPC-SFTSEEISYLTTRIQNGGTEVVEAKAGAGSATLSMAYAASKFADACLR 284
Query: 268 GLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGQLSXXXXXXXXXXXXXXX 327
GL G +VECSFV S VTELPFFASKVRLG+ G+EE+L LG L+
Sbjct: 285 GLRGDAGIVECSFVASQVTELPFFASKVRLGRCGIEEILSLGPLNEFERAGLEKAKKELA 344
Query: 328 SSIEKGIKF 336
SI+KG+ F
Sbjct: 345 ESIQKGVAF 353
>AK109028
Length = 345
Score = 395 bits (1014), Expect = e-110, Method: Compositional matrix adjust.
Identities = 214/315 (67%), Positives = 243/315 (77%), Gaps = 4/315 (1%)
Query: 26 ERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIAGTPGVAADVSHINSPALVKGFVGE 85
ERKVA+LGAAGGIGQPL+LLMK+NP VS LSLYD+AGT GV ADVSHINS A VKG+ G+
Sbjct: 31 ERKVAVLGAAGGIGQPLSLLMKMNPQVSQLSLYDVAGTRGVGADVSHINSRAQVKGYEGD 90
Query: 86 EQLGEALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKGLCTAISKYCPNALVNMISNP 145
QL EAL+G D+VIIPAGVPRKPGMTRDDLF INAGIVKGL A K+CP A++N+ISNP
Sbjct: 91 AQLAEALKGCDLVIIPAGVPRKPGMTRDDLFKINAGIVKGLVEACGKHCPGAILNIISNP 150
Query: 146 VNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKAXXXXXXXXXXXXGGHAGI 205
VNSTVPIAAE KK G YD++K+ GVTTLDVVRAKTFYA K GGHAGI
Sbjct: 151 VNSTVPIAAEALKKMGVYDKRKVMGVTTLDVVRAKTFYAEKLGLDVGQVDVPVVGGHAGI 210
Query: 206 TILPLFSQATPA--SNALSHEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFAD 263
TILPLFSQATP SN S E I+ALTKRTQDGGTEVVEAKAGKGSATLSMAYA A+FAD
Sbjct: 211 TILPLFSQATPTMPSNT-SAEVIEALTKRTQDGGTEVVEAKAGKGSATLSMAYAAALFAD 269
Query: 264 ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGQLSXXXXXXXXXXX 323
ACL+G+NG EC+FV+S VT+LP+FA+KV+LG GVE + +G +S
Sbjct: 270 ACLRGMNGA-TATECTFVESDVTDLPYFATKVKLGTEGVETIQPVGSMSAYEQEAYNALT 328
Query: 324 XXXXSSIEKGIKFAH 338
+SIEKGIKF
Sbjct: 329 PELQASIEKGIKFVR 343
>Os03g0773800 Similar to Malate dehydrogenase, glyoxysomal precursor (EC
1.1.1.37) (mbNAD-MDH)
Length = 354
Score = 385 bits (989), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/309 (64%), Positives = 229/309 (74%), Gaps = 1/309 (0%)
Query: 28 KVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIAGTPGVAADVSHINSPALVKGFVGEEQ 87
KVA+LGAAGGIGQPL+LLMKLNPLVS L LYD+ TPGV ADVSH+++ A+V+GF+G Q
Sbjct: 44 KVAVLGAAGGIGQPLSLLMKLNPLVSVLHLYDVVNTPGVTADVSHMDTTAVVRGFLGPNQ 103
Query: 88 LGEALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKGLCTAISKYCPNALVNMISNPVN 147
L AL G D+VIIPAG+PRKPGMTRDDLFN NAGIV+ LC ++K CPNA+VN+ISNPVN
Sbjct: 104 LEAALTGMDLVIIPAGLPRKPGMTRDDLFNKNAGIVRSLCEGVAKCCPNAIVNLISNPVN 163
Query: 148 STVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKAXXXXXXXXXXXXGGHAGITI 207
STVPIAAEVFKKAGTYD K+L GVTTLDV RA TF A GGHAG+TI
Sbjct: 164 STVPIAAEVFKKAGTYDPKRLLGVTTLDVARANTFVAEVLGIDPKDVNVPVVGGHAGVTI 223
Query: 208 LPLFSQATPASNALSHEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLK 267
LPL SQ P + + ++I LTKR Q+GGTEVVEAKAG GSATLSMA+A A F DACL+
Sbjct: 224 LPLLSQVHPPC-SFTPDEISYLTKRIQNGGTEVVEAKAGAGSATLSMAFAAAKFGDACLR 282
Query: 268 GLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGQLSXXXXXXXXXXXXXXX 327
+ G VVECS+V S VTELPFFA+KVRLG+ G EEVL LG L+
Sbjct: 283 AMRGDAGVVECSYVASAVTELPFFATKVRLGRAGAEEVLPLGPLNDFERAGLEMAKKELM 342
Query: 328 SSIEKGIKF 336
SI+KGI F
Sbjct: 343 ESIQKGIDF 351
>Os08g0434300 Similar to Malate dehydrogenase precursor (EC 1.1.1.37)
Length = 356
Score = 367 bits (942), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/313 (60%), Positives = 224/313 (71%), Gaps = 3/313 (0%)
Query: 28 KVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIAGTPGVAADVSHINSPALVKGFVGEEQ 87
KVA+LGAAGGIGQPL LL+K++PLVS L LYDIA GVAAD+SH N+P+ V F G +
Sbjct: 36 KVAVLGAAGGIGQPLGLLIKMSPLVSELHLYDIANVKGVAADLSHCNTPSQVLDFTGPSE 95
Query: 88 LGEALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKGLCTAISKYCPNALVNMISNPVN 147
L L+G DVV+IPAGVPRKPGMTRDDLFNINA IVK L A++ CP A +++ISNPVN
Sbjct: 96 LANCLKGVDVVVIPAGVPRKPGMTRDDLFNINASIVKSLVEAVADNCPEAFIHIISNPVN 155
Query: 148 STVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKAXXXXXXXXXXXXGGHAGITI 207
STVPIAAEV K+ G Y+ KKLFGVTTLDVVRA TF A K GGHAGITI
Sbjct: 156 STVPIAAEVLKQKGVYNPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITI 215
Query: 208 LPLFSQATPASNALSHEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLK 267
LPL S+ P S + E+ + LTKR Q+ GTEVVEAKAG GSATLSMAYA A F ++ L+
Sbjct: 216 LPLLSKTMP-SVTFTDEETEQLTKRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLR 274
Query: 268 GLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLG--LGQLSXXXXXXXXXXXXX 325
L G PDV EC+FVQS +TELPFFAS+V+LGKNGVE ++ L ++
Sbjct: 275 ALAGDPDVYECTFVQSELTELPFFASRVKLGKNGVESIISADLEGVTEYEAKALEALKSE 334
Query: 326 XXSSIEKGIKFAH 338
+SIEKGI+F H
Sbjct: 335 LKASIEKGIEFVH 347
>Os01g0829800 Similar to Malate dehydrogenase precursor (EC 1.1.1.37)
Length = 396
Score = 362 bits (929), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/313 (59%), Positives = 225/313 (71%), Gaps = 3/313 (0%)
Query: 28 KVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIAGTPGVAADVSHINSPALVKGFVGEEQ 87
KVA+LGAAGGIGQPL LL+K++PLVS+L LYDIA GVAAD+SH N+P+ V F G +
Sbjct: 77 KVAVLGAAGGIGQPLGLLIKMSPLVSALHLYDIANVKGVAADLSHCNTPSQVLDFTGPSE 136
Query: 88 LGEALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKGLCTAISKYCPNALVNMISNPVN 147
L L+G DVV+IPAGVPRKPGMTRDDLFNINA IVK L A++ CP A +++ISNPVN
Sbjct: 137 LANCLKGVDVVVIPAGVPRKPGMTRDDLFNINASIVKTLVEAVADNCPEAFIHIISNPVN 196
Query: 148 STVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKAXXXXXXXXXXXXGGHAGITI 207
STVPIAAEV K+ G Y+ KKLFGVTTLDVVRA TF A K GGHAGITI
Sbjct: 197 STVPIAAEVLKQKGVYNPKKLFGVTTLDVVRANTFIAQKKNLKLIDVDVPVVGGHAGITI 256
Query: 208 LPLFSQATPASNALSHEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLK 267
LPL S+ P S ++E+ + LT+R Q+ GTEVVEAKAG GSATLSMAYA A F ++ L+
Sbjct: 257 LPLLSKTRP-SVTFTNEETEELTRRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLR 315
Query: 268 GLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLG--LGQLSXXXXXXXXXXXXX 325
L G PDV EC+FVQS +TEL FFAS+V+LGKNGVE ++ L ++
Sbjct: 316 ALAGDPDVYECTFVQSELTELLFFASRVKLGKNGVESIISSDLEGVTEYEAKALESLKPE 375
Query: 326 XXSSIEKGIKFAH 338
+SIEKGI+F H
Sbjct: 376 LKASIEKGIEFVH 388
>Os07g0630800 Similar to Nodule-enhanced malate dehydrogenase
Length = 404
Score = 345 bits (884), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 186/318 (58%), Positives = 223/318 (70%), Gaps = 8/318 (2%)
Query: 28 KVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIAGTPGVAADVSHINSPALVKGFVGEEQ 87
KVAILGAAGGIGQPL+LL+K++PLVS+L LYDIA GV AD+ H N+PA V GF G+E+
Sbjct: 79 KVAILGAAGGIGQPLSLLVKMSPLVSALHLYDIANVDGVTADLGHCNTPAKVAGFTGKEE 138
Query: 88 LGEALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKGLCTAISKYCPNALVNMISNPVN 147
L L G DVV+IPAGVPRKPGMTRDDLF INAGIV+ L A++ + P ALV++ISNPVN
Sbjct: 139 LAGCLAGVDVVVIPAGVPRKPGMTRDDLFGINAGIVRELVEAVADHAPAALVHVISNPVN 198
Query: 148 STVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKAXXXXXXXXXXXXGGHAGITI 207
STVPIAAEV K+ G YD +KLFGVTTLDVVRA TF A GGHA TI
Sbjct: 199 STVPIAAEVLKRKGVYDPRKLFGVTTLDVVRANTFVAEMKGLPLADVDVPVVGGHAAATI 258
Query: 208 LPLFSQATPASNALSHEDIKALTKRTQDGGTEVVE--AKAGKGSATLSMAYAGAVFADAC 265
LPL S+A P A + E+++ALT+R Q+ GTEVVE AKAG GSATLSMAYA A F +A
Sbjct: 259 LPLLSKARP-KTAFTDEEVEALTRRIQNAGTEVVEAKAKAGGGSATLSMAYAAARFLEAS 317
Query: 266 LKGLNGVPDVVECSFVQ-STVTELPFFASKVRLGKNGVEEVLGLGQ----LSXXXXXXXX 320
L+GL+G DV ECS+VQ V ELPFFA +V+LG++GVEEV G L+
Sbjct: 318 LRGLDGDADVYECSYVQCQAVPELPFFACRVKLGRDGVEEVAAAGAELRGLTEFEARALE 377
Query: 321 XXXXXXXSSIEKGIKFAH 338
SI+KG+ +A
Sbjct: 378 ALKPQLKKSIDKGVAYAQ 395
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.134 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,275,640
Number of extensions: 361313
Number of successful extensions: 877
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 865
Number of HSP's successfully gapped: 8
Length of query: 340
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 238
Effective length of database: 11,709,973
Effective search space: 2786973574
Effective search space used: 2786973574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)