BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0624900 Os12g0624900|AK101421
(309 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0624900 Similar to GATA transcription factor 2 (AtGATA-2) 578 e-165
Os10g0557600 Zinc finger, GATA-type domain containing protein 125 3e-29
Os05g0520300 Similar to GATA transcription factor 3 (AtGATA-3) 117 1e-26
Os01g0745700 Similar to GATA transcription factor 3 (AtGATA-3) 116 2e-26
Os02g0645600 Similar to AG-motif binding protein-3 114 1e-25
Os04g0539500 Zinc finger, GATA-type domain containing protein 113 1e-25
Os03g0145200 Zinc finger, GATA-type domain containing protein 111 6e-25
Os11g0187200 100 2e-21
Os03g0130600 97 1e-20
Os12g0168800 Similar to AG-motif binding protein-2 96 3e-20
Os10g0458800 93 2e-19
>Os12g0624900 Similar to GATA transcription factor 2 (AtGATA-2)
Length = 309
Score = 578 bits (1491), Expect = e-165, Method: Compositional matrix adjust.
Identities = 283/309 (91%), Positives = 283/309 (91%)
Query: 1 MDVHPPNAAASSLEELFPHQPATESDRSGIEWLSVYVEDCLSTSASCTNPVSAELPPITM 60
MDVHPPNAAASSLEELFPHQPATESDRSGIEWLSVYVEDCLSTSASCTNPVSAELPPITM
Sbjct: 1 MDVHPPNAAASSLEELFPHQPATESDRSGIEWLSVYVEDCLSTSASCTNPVSAELPPITM 60
Query: 61 ASQGAAKPKLPPRSSTNARKKKRSLASVISDTDDQHCITLFVEPPLLLLDHKDWLAESEL 120
ASQGAAKPKLPPRSSTNARKKKRSLASVISDTDDQHCITLFVEPPLLLLDHKDWLAESEL
Sbjct: 61 ASQGAAKPKLPPRSSTNARKKKRSLASVISDTDDQHCITLFVEPPLLLLDHKDWLAESEL 120
Query: 121 ILPKKDKDXXXXXXXXXXXXXNYKMSAGMQFQQEQLVITCSYCLSSQSPQWWDGPSGPTC 180
ILPKKDKD NYKMSAGMQFQQEQLVITCSYCLSSQSPQWWDGPSGPTC
Sbjct: 121 ILPKKDKDEELVQEQEQEEEENYKMSAGMQFQQEQLVITCSYCLSSQSPQWWDGPSGPTC 180
Query: 181 DACRLRIEARNGHTTSSKKRYGQEIDKEQXXXXXXXXXXXXXAVYVNDELLSEEPMKRCT 240
DACRLRIEARNGHTTSSKKRYGQEIDKEQ AVYVNDELLSEEPMKRCT
Sbjct: 181 DACRLRIEARNGHTTSSKKRYGQEIDKEQDIGKRRDKKKIKKAVYVNDELLSEEPMKRCT 240
Query: 241 HCLSYKTPQWRTGPLGPKTLCNACGVRFKSGRLLPEYRPANSPTFVSDIHSNSHKKVMQL 300
HCLSYKTPQWRTGPLGPKTLCNACGVRFKSGRLLPEYRPANSPTFVSDIHSNSHKKVMQL
Sbjct: 241 HCLSYKTPQWRTGPLGPKTLCNACGVRFKSGRLLPEYRPANSPTFVSDIHSNSHKKVMQL 300
Query: 301 RNSVPHPRK 309
RNSVPHPRK
Sbjct: 301 RNSVPHPRK 309
>Os10g0557600 Zinc finger, GATA-type domain containing protein
Length = 260
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 63/73 (86%)
Query: 229 ELLSEEPMKRCTHCLSYKTPQWRTGPLGPKTLCNACGVRFKSGRLLPEYRPANSPTFVSD 288
E+ E ++RCTHC S KTPQWRTGPLGPKTLCNACGVRFKSGRL+PEYRPA SPTFV
Sbjct: 141 EVGMEAGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLMPEYRPAASPTFVLT 200
Query: 289 IHSNSHKKVMQLR 301
HSNSH+KVM+LR
Sbjct: 201 QHSNSHRKVMELR 213
>Os05g0520300 Similar to GATA transcription factor 3 (AtGATA-3)
Length = 386
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 50/65 (76%), Positives = 58/65 (89%)
Query: 237 KRCTHCLSYKTPQWRTGPLGPKTLCNACGVRFKSGRLLPEYRPANSPTFVSDIHSNSHKK 296
+RC HC + KTPQWRTGP+GPKTLCNACGVR+KSGRL+PEYRPA SPTFV HSNSH+K
Sbjct: 253 RRCLHCETDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVVSKHSNSHRK 312
Query: 297 VMQLR 301
V++LR
Sbjct: 313 VVELR 317
>Os01g0745700 Similar to GATA transcription factor 3 (AtGATA-3)
Length = 387
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 49/65 (75%), Positives = 58/65 (89%)
Query: 237 KRCTHCLSYKTPQWRTGPLGPKTLCNACGVRFKSGRLLPEYRPANSPTFVSDIHSNSHKK 296
+RC HC + KTPQWRTGP+GPKTLCNACGVR+KSGRL+PEYRPA SPTF+ HSNSH+K
Sbjct: 262 RRCLHCETDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFMVSKHSNSHRK 321
Query: 297 VMQLR 301
V++LR
Sbjct: 322 VLELR 326
>Os02g0645600 Similar to AG-motif binding protein-3
Length = 387
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 49/66 (74%), Positives = 57/66 (86%)
Query: 237 KRCTHCLSYKTPQWRTGPLGPKTLCNACGVRFKSGRLLPEYRPANSPTFVSDIHSNSHKK 296
+RC+HC KTPQWR GP G KTLCNACGVR+KSGRLLPEYRPA SPTFVS +HSNSH+K
Sbjct: 304 RRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSSLHSNSHRK 363
Query: 297 VMQLRN 302
V+++R
Sbjct: 364 VLEMRR 369
>Os04g0539500 Zinc finger, GATA-type domain containing protein
Length = 198
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 50/66 (75%), Positives = 57/66 (86%)
Query: 237 KRCTHCLSYKTPQWRTGPLGPKTLCNACGVRFKSGRLLPEYRPANSPTFVSDIHSNSHKK 296
+RC+HC KTPQWR GP G KTLCNACGVR+KSGRLLPEYRPA SPTFVS IHSNSH+K
Sbjct: 111 RRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSAIHSNSHRK 170
Query: 297 VMQLRN 302
V+++R
Sbjct: 171 VLEMRR 176
>Os03g0145200 Zinc finger, GATA-type domain containing protein
Length = 219
Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 47/63 (74%), Positives = 54/63 (85%)
Query: 239 CTHCLSYKTPQWRTGPLGPKTLCNACGVRFKSGRLLPEYRPANSPTFVSDIHSNSHKKVM 298
CTHC +TPQWR GP GP+TLCNACGVRFKSGRL PEYRPANSPTF +HSNSH++VM
Sbjct: 124 CTHCAVDETPQWRLGPDGPRTLCNACGVRFKSGRLFPEYRPANSPTFSPLLHSNSHRRVM 183
Query: 299 QLR 301
++R
Sbjct: 184 EMR 186
>Os11g0187200
Length = 431
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 52/65 (80%)
Query: 237 KRCTHCLSYKTPQWRTGPLGPKTLCNACGVRFKSGRLLPEYRPANSPTFVSDIHSNSHKK 296
+RC+HC + +TPQWR GP GP TLCNACG+R K RLLPEYRP+ SP+F D HSN H+K
Sbjct: 361 RRCSHCGTSETPQWRMGPDGPGTLCNACGIRSKMDRLLPEYRPSTSPSFNGDEHSNRHRK 420
Query: 297 VMQLR 301
V++LR
Sbjct: 421 VLKLR 425
>Os03g0130600
Length = 271
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 51/65 (78%)
Query: 237 KRCTHCLSYKTPQWRTGPLGPKTLCNACGVRFKSGRLLPEYRPANSPTFVSDIHSNSHKK 296
KRC HC + +TPQWR GP GP TLCNACG+R++ LLPEYRP+ SP F SD +SN H+K
Sbjct: 186 KRCGHCQTTETPQWRVGPDGPSTLCNACGIRYRIDHLLPEYRPSTSPGFGSDGYSNRHRK 245
Query: 297 VMQLR 301
V++LR
Sbjct: 246 VVKLR 250
>Os12g0168800 Similar to AG-motif binding protein-2
Length = 414
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 49/64 (76%)
Query: 239 CTHCLSYKTPQWRTGPLGPKTLCNACGVRFKSGRLLPEYRPANSPTFVSDIHSNSHKKVM 298
C HC S +TPQWR GP G TLCNACGVR++ GRLLPEYRP SPTF +H+ +H++V+
Sbjct: 279 CVHCGSTETPQWREGPTGRGTLCNACGVRYRQGRLLPEYRPKGSPTFSPSVHAANHRQVL 338
Query: 299 QLRN 302
+LR
Sbjct: 339 ELRR 342
>Os10g0458800
Length = 528
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 50/63 (79%)
Query: 239 CTHCLSYKTPQWRTGPLGPKTLCNACGVRFKSGRLLPEYRPANSPTFVSDIHSNSHKKVM 298
C HC + +TPQWR GP G +TLCNAC +R++SG+L+PEYRP SPTF ++HSN H +V+
Sbjct: 65 CRHCGTTETPQWRHGPEGHRTLCNACSMRYRSGKLVPEYRPLRSPTFSPELHSNRHHRVL 124
Query: 299 QLR 301
QLR
Sbjct: 125 QLR 127
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 43/58 (74%)
Query: 237 KRCTHCLSYKTPQWRTGPLGPKTLCNACGVRFKSGRLLPEYRPANSPTFVSDIHSNSH 294
+RCTHC + KTP W +GP LCNACG +++ GRL+PEYRP N PTF ++HSN+H
Sbjct: 453 RRCTHCGTTKTPAWLSGPDSRGKLCNACGKQYRKGRLVPEYRPLNCPTFSPELHSNAH 510
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.129 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,087,259
Number of extensions: 423344
Number of successful extensions: 1545
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 1543
Number of HSP's successfully gapped: 12
Length of query: 309
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 208
Effective length of database: 11,762,187
Effective search space: 2446534896
Effective search space used: 2446534896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)