Os02g0645600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to AG-motif binding protein-3.
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Os02g0645600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to AG-motif binding protein-3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.28 | 0.287 | 10.6 | 0.681 | 1.03 | -0.386 | -0.0126 | 5.07 | 0.00604 | 4.42 | 27.5 | 811 | -- | -- |
| 38.42 | 0.289 | 10.7 | -0.0593 | 1.04 | 0.26 | -0.174 | -- | -0.101 | 4.49 | 27.86 | 4475 | -- | -- |
| 37.27 | 0.284 | 10.6 | 0.677 | 1.03 | -0.385 | -- | 5.1 | 0.00567 | 4.42 | 27.5 | 804 | -- | -- |
| 38.51 | 0.289 | 10.7 | -0.0664 | 1.04 | 0.265 | -- | -- | -0.0899 | 4.48 | 27.78 | 4475 | -- | -- |
| 78.83 | 0.414 | 10.7 | 0.642 | -- | -1.06 | -- | 3.33 | 0.11 | -- | 24.4 | 327 | -- | -- |
| 40.85 | 0.3 | 10.7 | 0.00347 | 1.05 | -- | -0.173 | -- | -0.11 | 4.45 | -- | -- | -- | -- |
| 40.93 | 0.3 | 10.7 | 0.00476 | 1.05 | -- | -- | -- | -0.109 | 4.44 | -- | -- | -- | -- |
| 81.71 | 0.421 | 10.7 | 0.191 | -- | -0.831 | -- | -- | 0.000274 | -- | 24.2 | 216 | -- | -- |
| 38.63 | 0.289 | 10.7 | -- | 1.04 | 0.25 | -- | -- | -0.0833 | 4.49 | 27.94 | 4454 | -- | -- |
| 100.06 | 0.467 | 10.7 | 0.0459 | -- | -- | -- | -- | -0.0812 | -- | -- | -- | -- | -- |
| 40.93 | 0.299 | 10.7 | -- | 1.05 | -- | -- | -- | -0.11 | 4.44 | -- | -- | -- | -- |
| 82.5 | 0.423 | 10.7 | -- | -- | -0.787 | -- | -- | -0.0234 | -- | 24.22 | 220 | -- | -- |
| 100.12 | 0.467 | 10.7 | -- | -- | -- | -- | -- | -0.0863 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.30 | temperature | 25 | 90 | > th | dose independent | rect. | 16 | 11 |
| 2 | 36.41 | temperature | 30 | 720 | > th | dose independent | rect. | 13 | 1 |
| 4 | 36.50 | temperature | 25 | 10 | > th | dose independent | rect. | 16 | 12 |
| 5 | 36.52 | temperature | 25 | 10 | > th | dose independent | rect. | 16 | 10 |
| 10 | 36.60 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 1 |
| 14 | 36.66 | temperature | 25 | 90 | > th | dose dependent | rect. | 16 | 15 |
| 16 | 36.74 | temperature | 20 | 30 | > th | dose dependent | rect. | 16 | 11 |
| 24 | 36.97 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 6 |
| 46 | 37.17 | temperature | 25 | 270 | > th | dose dependent | sin | 12 | NA |
| 49 | 37.18 | temperature | 25 | 90 | > th | dose independent | rect. | 16 | 15 |
| 65 | 37.29 | temperature | 25 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 67 | 37.30 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 88 | 37.33 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 3 |
| 93 | 37.35 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 99 | 37.37 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 100 | 37.38 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 13 |
| 103 | 37.39 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 130 | 37.44 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 15 |
| 152 | 37.49 | temperature | 30 | 4320 | > th | dose dependent | rect. | 8 | 4 |
| 168 | 37.50 | temperature | 30 | 4320 | < th | dose independent | rect. | 5 | 7 |
| 175 | 37.51 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 176 | 37.51 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 4 |
| 195 | 37.51 | temperature | 30 | 4320 | < th | dose independent | rect. | 20 | 16 |
| 201 | 37.52 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 7 |
| 208 | 37.53 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 228 | 37.54 | temperature | 25 | 720 | > th | dose dependent | rect. | 14 | 7 |
| 233 | 37.55 | temperature | 25 | 720 | > th | dose dependent | rect. | 14 | 5 |
| 246 | 37.58 | temperature | 30 | 720 | > th | dose independent | sin | 5 | NA |
| 251 | 37.59 | temperature | 25 | 720 | > th | dose dependent | sin | 16 | NA |
| 257 | 37.60 | temperature | 30 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 258 | 37.60 | temperature | 30 | 720 | < th | dose independent | rect. | 6 | 9 |
| 272 | 37.62 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 275 | 37.62 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 277 | 37.62 | temperature | 30 | 14400 | < th | dose independent | rect. | 23 | 10 |
| 284 | 37.63 | temperature | 30 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 303 | 37.64 | temperature | 30 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 332 | 37.65 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 10 |
| 360 | 37.68 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 7 |
| 373 | 37.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 4 |
| 377 | 37.69 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 17 |
| 381 | 37.70 | temperature | 30 | 4320 | > th | dose independent | sin | 8 | NA |
| 471 | 37.73 | temperature | 30 | 4320 | < th | dose independent | sin | 8 | NA |
| 474 | 37.73 | temperature | 30 | 4320 | > th | dose dependent | sin | 8 | NA |
| 642 | 37.86 | temperature | 25 | 90 | > th | dose independent | sin | 13 | NA |
| 697 | 37.88 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 707 | 37.88 | temperature | 25 | 720 | > th | dose dependent | rect. | 5 | 23 |
| 708 | 37.88 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 737 | 37.89 | temperature | 25 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 739 | 37.90 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 753 | 37.90 | temperature | 25 | 720 | > th | dose dependent | rect. | 2 | 23 |
| 773 | 37.92 | radiation | 10 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 800 | 37.92 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 881 | 37.97 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 915 | 37.98 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 947 | 37.99 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 22 | 22 |